Rh6AG493900

Neprosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017074
Physical Location & Seq
Reverse (-)
67042276 .. 67043904
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG493900.1

Sequence Viewer

Length: 507 bp
ATGAGTACACTACTGCTCAAATCTGGCTTAAGAATGGACCTGGAAATGCCTTTAAACCCAAAGTTGTATGGTGATTCAGCTGCTCGACTTTTCGTGTATTGGACAGTGGACTCGCACAAATCAACAGGTTGCTTTGATCTAACTTGCTCAGGATTTCTGCAAGCTCATAAAGACATAGCCCTTGGTATGCCCCTAGGACCTGTATCAAGTGGAGGAGGACCCCAATATCAAACCACTTTCAGCATCAACAAGGTTTGGACGCTTTTCTTTGGATATTGGCCACCAACTCTCTTCTCCTATCTGAAACAAGGTCCTGCAACATTGGTTGAAAGGGGTGGGGAGGTGTATAGCTCCAAGGTGAAGGAGACTCGTCCACACACTGGGAATATGAAGTGGGGATTTCGCTTCAGGCAAAGATGGAAGTGCTTGTTACGTGAGACAAGTGAGAATCGTGGATTGTTCACTGCAACTAAAGTACCCAGAATGGGTAGGCACTTTTGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neprosin Neprosin_AP

Protein Analysis

168

Amino Acids

19.11

Weight (kDa)

9.88

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neprosin PF03080 18 - 132 3.4e-32 Neprosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25950 AT5G25960
fragaria_vesca FvH4_2g32291
malus_domestica MD08G1074000.v1.1
prunus_persica Prupe.1G415900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0310401
rosa_laevigata RLG00000010485
rosa_roxburghii Rroxscaffold_7G00158560
rosa_rugosa Rorug06G0379900
rosa_samantha Rh6AG493900 Rh6BG503600 Rh6CG508800 Rh6DG494700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 380
AcoI YGGCCR 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 391
AfaI GTAC 2 cut(s) 7, 477
AfiI CCNNNNNNNGG 2 cut(s) 380, 485
AflII CTTAAG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 329
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 3 cut(s) 80, 164, 351
AluI AGCT 3 cut(s) 80, 164, 351
Alw26I GTCTC 2 cut(s) 359, 431
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 80
AspA2I CCTAGG 1 cut(s) 193
AspS9I GGNCC 4 cut(s) 37, 197, 218, 311
AsuHPI GGTGA 2 cut(s) 83, 370
AvaII GGWCC 4 cut(s) 37, 197, 218, 311
AvrII CCTAGG 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BalI TGGCCA 1 cut(s) 280
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 411
BcgI CGANNNNNNTGC 1 cut(s) 482
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 2 cut(s) 359, 431
BfaI CTAG 1 cut(s) 194
BfrI CTTAAG 1 cut(s) 28
BisI GCNGC 1 cut(s) 81
BlnI CCTAGG 1 cut(s) 193
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 4 cut(s) 37, 197, 218, 311
BmgT120I GGNCC 4 cut(s) 37, 197, 218, 311
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 41
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 252
BmuI ACTGGG 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 181, 193, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 485
Bse1I ACTGG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 3 cut(s) 181, 193, 354
BseLI CCNNNNNNNGG 2 cut(s) 380, 485
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 380, 485
BsmAI GTCTC 2 cut(s) 359, 431
BsnI GGCC 1 cut(s) 280
Bsp143I GATC 1 cut(s) 136
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 220
BspTI CTTAAG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 3 cut(s) 181, 193, 354
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 3 cut(s) 181, 193, 354
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 296
BstAFI CTTAAG 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 148
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 2 cut(s) 359, 431
BstMBI GATC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 3 cut(s) 111, 378, 462
Cac8I GCNNGC 1 cut(s) 162
Cfr13I GGNCC 4 cut(s) 37, 197, 218, 311
CseI GACGC 1 cut(s) 268
Csp6I GTAC 2 cut(s) 6, 476
CviJI RGCY 6 cut(s) 27, 80, 164, 179, 280, 351
CviKI_1 RGCY 6 cut(s) 27, 80, 164, 179, 280, 351
CviQI GTAC 2 cut(s) 6, 476
DdeI CTNAG 1 cut(s) 148
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
DraI TTTAAA 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 3 cut(s) 181, 193, 354
Eco47I GGWCC 4 cut(s) 37, 197, 218, 311
Eco57I CTGAAG 1 cut(s) 391
EcoO109I RGGNCCY 3 cut(s) 197, 218, 311
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 3 cut(s) 181, 193, 354
ErhI CCWWGG 3 cut(s) 181, 193, 354
FaiI YATR 6 cut(s) 69, 168, 176, 188, 348, 389
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 194
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 280
HgaI GACGC 1 cut(s) 268
HinfI GANTC 4 cut(s) 74, 110, 367, 448
HphI GGTGA 2 cut(s) 83, 370
Hpy166II GTNNAC 4 cut(s) 8, 109, 374, 462
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 1 cut(s) 150
Hpy8I GTNNAC 4 cut(s) 8, 109, 374, 462
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 3 cut(s) 160, 317, 467
HpyF3I CTNAG 1 cut(s) 148
HpySE526I ACGT 1 cut(s) 433
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 252
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 1 cut(s) 429
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 280
MluNI TGGCCA 1 cut(s) 280
MlyI GAGTC 2 cut(s) 104, 361
MnlI CCTC 3 cut(s) 206, 209, 334
Mox20I TGGCCA 1 cut(s) 280
MscI TGGCCA 1 cut(s) 280
MseI TTAA 2 cut(s) 29, 53
Msp20I TGGCCA 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 80
MspCI CTTAAG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
NdeII GATC 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 74, 448
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 104, 361
PpsI GAGTC 2 cut(s) 104, 361
Ppu21I YACGTR 1 cut(s) 434
PpuMI RGGWCCY 3 cut(s) 197, 218, 311
Psp5II RGGWCCY 3 cut(s) 197, 218, 311
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 4 cut(s) 37, 197, 218, 311
PspPPI RGGWCCY 3 cut(s) 197, 218, 311
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 2 cut(s) 7, 477
RsaNI GTAC 2 cut(s) 6, 476
SaqAI TTAA 2 cut(s) 29, 53
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 4 cut(s) 37, 197, 218, 311
SchI GAGTC 2 cut(s) 104, 361
ScrFI CCNGG 1 cut(s) 41
SfaNI GCATC 1 cut(s) 252
SinI GGWCC 4 cut(s) 37, 197, 218, 311
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 3 cut(s) 181, 193, 354
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 436
TaqI TCGA 2 cut(s) 85, 502
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 2 cut(s) 74, 448
Tru1I TTAA 2 cut(s) 29, 53
Tru9I TTAA 2 cut(s) 29, 53
TscAI CASTG 3 cut(s) 111, 385, 469
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 404
TspRI CASTG 3 cut(s) 111, 385, 469
Van91I CCANNNNNTGG 1 cut(s) 380
Vha464I CTTAAG 1 cut(s) 28
VpaK11BI GGWCC 4 cut(s) 37, 197, 218, 311
XmaJI CCTAGG 1 cut(s) 193
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.