Rh7BG369200

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014749
Physical Location & Seq
Forward (+)
39461414 .. 39464759
3346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG369200.1

Sequence Viewer

Length: 471 bp
ATGATGAACATGAAGAGCAGCACTGCTACTAAGAAGAAGATGACGATGATGCCGAGGGGGTTCATGTGCCACTCTCAGGCAGCAACTGCCGTCTGCGTGAGCAGCGCCGATGCAGCTCGGTCCGCGATCGTCCCAGCTTCTAGAAATACGAGAATGATCAACAACTACAATGCCAGGTACTCGAAGATCGTTGAGTCACGTAGGTCTGGCAATTTAGCTGATCATGGAAAAAAACCAGTCTTGTTGTCTTCCATGATCAAGAGAGAGTCGTCTTTGAACTACCACCACCACCACCACCATCATCACTCGAAGCCAAAGATGTCACTGCAGAAAACAGCGTCAGTTCTACCTTCTACAGATAATGTCTTCCAGGTGGTTGTTATGAGGGTTGCTCTTCATTGTCAAGGATGTGCTGGTAAAGTGAAGAAACATCTTTCTAAAATGGAAGGTACGTACGTATTTACTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

156

Amino Acids

17.38

Weight (kDa)

10.33

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014749)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30890
malus_domestica MD08G1221300.v1.1 MD15G1412000.v1.1
prunus_persica Prupe.1G558400_v2.0.a1 Prupe.1G558400_v2.0.a1
pyrus_communis pycom08g19190 pycom15g36680
rosa_chinensis RchiOBHm_Chr7g0226171
rosa_laevigata RLG00000001761
rosa_multiflora Rmu_sc0001350.1_g000012
rosa_roxburghii Rroxscaffold_3G00233160
rosa_rugosa Rorug07G0235200
rosa_samantha Rh7AG382200 Rh7BG369200 Rh7CG401700 Rh7DG380600
rosa_wichuraiana Rw7G032000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 125
AciI CCGC 1 cut(s) 123
AfaI GTAC 3 cut(s) 179, 451, 455
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 2 cut(s) 173, 369
AluBI AGCT 3 cut(s) 116, 137, 218
AluI AGCT 3 cut(s) 116, 137, 218
AlwNI CAGNNNCTG 1 cut(s) 86
ApeKI GCWGC 4 cut(s) 18, 80, 102, 113
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 120
AvaII GGWCC 1 cut(s) 120
BaeI ACNNNNGTAYC 1 cut(s) 441
BbsI GAAGAC 2 cut(s) 240, 358
BbvI GCAGC 4 cut(s) 30, 92, 114, 125
BccI CCATC 1 cut(s) 306
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 175, 371
BclI TGATCA 3 cut(s) 156, 220, 255
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 2 cut(s) 326, 354
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 4 cut(s) 19, 81, 103, 114
BlsI GCNGC 4 cut(s) 20, 82, 104, 115
Bme1390I CCNGG 2 cut(s) 175, 371
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 175, 371
BmsI GCATC 2 cut(s) 39, 100
BpiI GAAGAC 2 cut(s) 240, 358
BplI GAGNNNNNCTC 2 cut(s) 376, 408
BsaAI YACGTR 3 cut(s) 200, 453, 457
BsaJI CCNNGG 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 2 cut(s) 175, 371
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 413
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 236
BseXI GCAGC 4 cut(s) 30, 92, 114, 125
BseYI CCCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 129
BsiWI CGTACG 1 cut(s) 453
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 116
Bsp143I GATC 5 cut(s) 126, 156, 186, 220, 255
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 330
BspQI GCTCTTC 2 cut(s) 8, 399
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 5 cut(s) 126, 156, 186, 220, 255
Bst2UI CCWGG 2 cut(s) 175, 371
Bst6I CTCTTC 2 cut(s) 8, 399
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 3 cut(s) 200, 453, 457
BstDEI CTNAG 2 cut(s) 30, 75
BstF5I GGATG 1 cut(s) 413
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 5 cut(s) 129, 159, 189, 223, 258
BstMBI GATC 5 cut(s) 126, 156, 186, 220, 255
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 4 cut(s) 86, 102, 113, 122
BstNI CCWGG 2 cut(s) 175, 371
BstSCI CCNGG 2 cut(s) 173, 369
BstSFI CTRYAG 2 cut(s) 326, 354
BstSNI TACGTA 2 cut(s) 453, 457
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 4 cut(s) 30, 92, 114, 125
BstV2I GAAGAC 2 cut(s) 240, 358
BtsCI GGATG 1 cut(s) 413
BtsI GCAGTG 2 cut(s) 21, 323
BtsIMutI CAGTG 2 cut(s) 21, 323
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 120
CpoI CGGWCCG 1 cut(s) 120
CseI GACGC 1 cut(s) 327
Csp6I GTAC 3 cut(s) 178, 450, 454
CspI CGGWCCG 1 cut(s) 120
CviAII CATG 4 cut(s) 10, 64, 224, 253
CviJI RGCY 4 cut(s) 116, 137, 218, 313
CviKI_1 RGCY 4 cut(s) 116, 137, 218, 313
CviQI GTAC 3 cut(s) 178, 450, 454
DdeI CTNAG 2 cut(s) 30, 75
DpnI GATC 5 cut(s) 128, 158, 188, 222, 257
DpnII GATC 5 cut(s) 126, 156, 186, 220, 255
Eam1104I CTCTTC 2 cut(s) 8, 399
EarI CTCTTC 2 cut(s) 8, 399
Eco105I TACGTA 2 cut(s) 453, 457
Eco47I GGWCC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 173, 369
FaeI CATG 4 cut(s) 13, 67, 227, 256
FaiI YATR 5 cut(s) 11, 65, 225, 254, 383
FaqI GGGAC 1 cut(s) 116
FatI CATG 4 cut(s) 9, 63, 223, 252
FbaI TGATCA 3 cut(s) 156, 220, 255
Fnu4HI GCNGC 4 cut(s) 19, 81, 103, 114
FokI GGATG 1 cut(s) 420
Fsp4HI GCNGC 4 cut(s) 19, 81, 103, 114
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 106
GluI GCNGC 4 cut(s) 19, 81, 103, 114
GsaI CCCAGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 108
HgaI GACGC 1 cut(s) 327
HhaI GCGC 1 cut(s) 107
Hin1II CATG 4 cut(s) 13, 67, 227, 256
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 2 cut(s) 194, 266
Hpy188III TCNNGA 2 cut(s) 141, 259
HpyAV CCTTC 2 cut(s) 360, 440
HpyCH4IV ACGT 3 cut(s) 199, 452, 456
HpyCH4V TGCA 2 cut(s) 113, 328
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 102, 113, 122
HpyF3I CTNAG 2 cut(s) 30, 75
HpySE526I ACGT 3 cut(s) 199, 452, 456
Hsp92II CATG 4 cut(s) 13, 67, 227, 256
HspAI GCGC 1 cut(s) 105
Ksp22I TGATCA 3 cut(s) 156, 220, 255
Kzo9I GATC 5 cut(s) 126, 156, 186, 220, 255
LguI GCTCTTC 2 cut(s) 8, 399
LpnPI CCDG 9 cut(s) 62, 147, 160, 187, 192, 249, 356, 383, 399
Lsp1109I GCAGC 4 cut(s) 30, 92, 114, 125
LweI GCATC 2 cut(s) 39, 100
MaeI CTAG 1 cut(s) 141
MaeII ACGT 3 cut(s) 199, 452, 456
MaeIII GTNAC 2 cut(s) 195, 321
MalI GATC 5 cut(s) 128, 158, 188, 222, 257
MboI GATC 5 cut(s) 126, 156, 186, 220, 255
MboII GAAGA 8 cut(s) 25, 46, 49, 196, 240, 358, 386, 436
MluCI AATT 1 cut(s) 211
MlyI GAGTC 2 cut(s) 203, 275
MnlI CCTC 2 cut(s) 48, 378
MseI TTAA 1 cut(s) 469
MspR9I CCNGG 2 cut(s) 175, 371
MvaI CCWGG 2 cut(s) 175, 371
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 4 cut(s) 86, 102, 113, 122
NdeII GATC 5 cut(s) 126, 156, 186, 220, 255
NlaIII CATG 4 cut(s) 13, 67, 227, 256
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 195, 321
PciSI GCTCTTC 2 cut(s) 8, 399
PcsI WCGNNNNNNNCGW 1 cut(s) 50
Pfl23II CGTACG 1 cut(s) 453
PkrI GCNGC 4 cut(s) 20, 82, 104, 115
Ple19I CGATCG 1 cut(s) 129
PleI GAGTC 2 cut(s) 202, 274
PpsI GAGTC 2 cut(s) 202, 274
Ppu21I YACGTR 3 cut(s) 200, 453, 457
Psp6I CCWGG 2 cut(s) 173, 369
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 2 cut(s) 173, 369
PspLI CGTACG 1 cut(s) 453
PspPI GGNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 330
PstNI CAGNNNCTG 1 cut(s) 86
PvuI CGATCG 1 cut(s) 129
RsaI GTAC 3 cut(s) 179, 451, 455
RsaNI GTAC 3 cut(s) 178, 450, 454
Rsr2I CGGWCCG 1 cut(s) 120
RsrII CGGWCCG 1 cut(s) 120
SapI GCTCTTC 2 cut(s) 8, 399
SaqAI TTAA 1 cut(s) 469
SatI GCNGC 4 cut(s) 19, 81, 103, 114
Sau3AI GATC 5 cut(s) 126, 156, 186, 220, 255
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 2 cut(s) 203, 275
ScrFI CCNGG 2 cut(s) 175, 371
SfaNI GCATC 2 cut(s) 39, 100
SfcI CTRYAG 2 cut(s) 326, 354
SinI GGWCC 1 cut(s) 120
SnaBI TACGTA 2 cut(s) 453, 457
Sse9I AATT 1 cut(s) 211
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 173, 369
TaiI ACGT 3 cut(s) 202, 455, 459
TaqI TCGA 2 cut(s) 182, 308
TaqII GACCGA 1 cut(s) 108
TasI AATT 1 cut(s) 211
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TscAI CASTG 2 cut(s) 28, 330
TseFI GTSAC 2 cut(s) 195, 321
TseI GCWGC 4 cut(s) 18, 80, 102, 113
Tsp45I GTSAC 2 cut(s) 195, 321
TspDTI ATGAA 4 cut(s) 20, 26, 52, 386
TspRI CASTG 2 cut(s) 28, 330
VpaK11BI GGWCC 1 cut(s) 120
XbaI TCTAGA 1 cut(s) 140
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.