Rh7DG380600

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014749
Physical Location & Seq
Forward (+)
51755775 .. 51759359
3585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG380600.1

Sequence Viewer

Length: 465 bp
ATGATGAACATGAAGAGCAGCACTGCTACTAAGAAGAAGATGACGATGATGCCGAAGGGGTTCATGTGCCACTCTCAGGCAGCAACTGCCGTCTGCGTGAGCAGCGCCGATGCAGCTCGGTCCGCGATCGTCCCAGCTGCTAGAAATACGAGAATGATCAACAACTACAATGCCAGGTACTCGAAGATCGTTGACTCACGTAGGTCTGGCAATTTAGCTGATCATGGACAAAAACCAGTCTTGTTGTCTTCCATGATCAAGAGAGGGTCGGCTTTGAACTACCACCACCACCATCATCACTCGAAGCCAAAGATGTCACTGCAGAAAACAGCATCAGTTCTACCTTCTACAGATAATGTCTTCCAGGTGGTTGTGATGAGGGTTGCTCTTCATTGTCAAGGATGTGCTGGTAAAGTGAAGAAACATCTTTCTAAAATGGAAGGTACGTACGTATTTACTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

154

Amino Acids

16.96

Weight (kDa)

10.34

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014749)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30890
malus_domestica MD08G1221300.v1.1 MD15G1412000.v1.1
prunus_persica Prupe.1G558400_v2.0.a1 Prupe.1G558400_v2.0.a1
pyrus_communis pycom08g19190 pycom15g36680
rosa_chinensis RchiOBHm_Chr7g0226171
rosa_laevigata RLG00000001761
rosa_multiflora Rmu_sc0001350.1_g000012
rosa_roxburghii Rroxscaffold_3G00233160
rosa_rugosa Rorug07G0235200
rosa_samantha Rh7AG382200 Rh7BG369200 Rh7CG401700 Rh7DG380600
rosa_wichuraiana Rw7G032000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 125
AciI CCGC 1 cut(s) 123
AfaI GTAC 3 cut(s) 179, 445, 449
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 2 cut(s) 173, 363
AluBI AGCT 3 cut(s) 116, 137, 218
AluI AGCT 3 cut(s) 116, 137, 218
AlwNI CAGNNNCTG 1 cut(s) 86
ApeKI GCWGC 5 cut(s) 18, 80, 102, 113, 137
Asp700I GAANNNNTTC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 120
AvaII GGWCC 1 cut(s) 120
BaeI ACNNNNGTAYC 1 cut(s) 435
BbsI GAAGAC 2 cut(s) 240, 352
BbvI GCAGC 5 cut(s) 30, 92, 114, 124, 125
BccI CCATC 1 cut(s) 300
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 175, 365
BclI TGATCA 3 cut(s) 156, 220, 255
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 2 cut(s) 320, 348
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 5 cut(s) 19, 81, 103, 114, 138
BlsI GCNGC 5 cut(s) 20, 82, 104, 115, 139
Bme1390I CCNGG 2 cut(s) 175, 365
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 175, 365
BmsI GCATC 3 cut(s) 39, 100, 341
BpiI GAAGAC 2 cut(s) 240, 352
BplI GAGNNNNNCTC 2 cut(s) 370, 402
BsaAI YACGTR 3 cut(s) 200, 447, 451
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 2 cut(s) 175, 365
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 236
BseXI GCAGC 5 cut(s) 30, 92, 114, 124, 125
BseYI CCCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 129
BsiWI CGTACG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 116
Bsp143I GATC 5 cut(s) 126, 156, 186, 220, 255
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 324
BspQI GCTCTTC 2 cut(s) 8, 393
BsrI ACTGG 1 cut(s) 236
BssMI GATC 5 cut(s) 126, 156, 186, 220, 255
Bst2UI CCWGG 2 cut(s) 175, 365
Bst6I CTCTTC 2 cut(s) 8, 393
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 3 cut(s) 200, 447, 451
BstDEI CTNAG 2 cut(s) 30, 75
BstF5I GGATG 1 cut(s) 407
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 5 cut(s) 129, 159, 189, 223, 258
BstMBI GATC 5 cut(s) 126, 156, 186, 220, 255
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 4 cut(s) 86, 102, 113, 122
BstNI CCWGG 2 cut(s) 175, 365
BstSCI CCNGG 2 cut(s) 173, 363
BstSFI CTRYAG 2 cut(s) 320, 348
BstSNI TACGTA 2 cut(s) 447, 451
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 5 cut(s) 30, 92, 114, 124, 125
BstV2I GAAGAC 2 cut(s) 240, 352
BtsCI GGATG 1 cut(s) 407
BtsI GCAGTG 2 cut(s) 21, 317
BtsIMutI CAGTG 2 cut(s) 21, 317
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 120
CpoI CGGWCCG 1 cut(s) 120
Csp6I GTAC 3 cut(s) 178, 444, 448
CspI CGGWCCG 1 cut(s) 120
CviAII CATG 4 cut(s) 10, 64, 224, 253
CviJI RGCY 5 cut(s) 116, 137, 218, 272, 307
CviKI_1 RGCY 5 cut(s) 116, 137, 218, 272, 307
CviQI GTAC 3 cut(s) 178, 444, 448
DdeI CTNAG 2 cut(s) 30, 75
DpnI GATC 5 cut(s) 128, 158, 188, 222, 257
DpnII GATC 5 cut(s) 126, 156, 186, 220, 255
Eam1104I CTCTTC 2 cut(s) 8, 393
EarI CTCTTC 2 cut(s) 8, 393
Eco105I TACGTA 2 cut(s) 447, 451
Eco47I GGWCC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 173, 363
FaeI CATG 4 cut(s) 13, 67, 227, 256
FaiI YATR 4 cut(s) 11, 65, 225, 254
FaqI GGGAC 1 cut(s) 116
FatI CATG 4 cut(s) 9, 63, 223, 252
FbaI TGATCA 3 cut(s) 156, 220, 255
Fnu4HI GCNGC 5 cut(s) 19, 81, 103, 114, 138
FokI GGATG 1 cut(s) 414
Fsp4HI GCNGC 5 cut(s) 19, 81, 103, 114, 138
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 106
GluI GCNGC 5 cut(s) 19, 81, 103, 114, 138
GsaI CCCAGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 108
HhaI GCGC 1 cut(s) 107
Hin1II CATG 4 cut(s) 13, 67, 227, 256
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 3 cut(s) 49, 354, 434
HpyCH4IV ACGT 3 cut(s) 199, 446, 450
HpyCH4V TGCA 2 cut(s) 113, 322
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 102, 113, 122
HpyF3I CTNAG 2 cut(s) 30, 75
HpySE526I ACGT 3 cut(s) 199, 446, 450
Hsp92II CATG 4 cut(s) 13, 67, 227, 256
HspAI GCGC 1 cut(s) 105
Ksp22I TGATCA 3 cut(s) 156, 220, 255
Kzo9I GATC 5 cut(s) 126, 156, 186, 220, 255
LguI GCTCTTC 2 cut(s) 8, 393
LpnPI CCDG 9 cut(s) 62, 147, 160, 187, 192, 249, 350, 377, 393
Lsp1109I GCAGC 5 cut(s) 30, 92, 114, 124, 125
LweI GCATC 3 cut(s) 39, 100, 341
MaeI CTAG 1 cut(s) 141
MaeII ACGT 3 cut(s) 199, 446, 450
MaeIII GTNAC 1 cut(s) 315
MalI GATC 5 cut(s) 128, 158, 188, 222, 257
MboI GATC 5 cut(s) 126, 156, 186, 220, 255
MboII GAAGA 8 cut(s) 25, 46, 49, 196, 240, 352, 380, 430
MluCI AATT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 2 cut(s) 257, 372
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 1 cut(s) 463
MspA1I CMGCKG 1 cut(s) 137
MspR9I CCNGG 2 cut(s) 175, 365
MvaI CCWGG 2 cut(s) 175, 365
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 4 cut(s) 86, 102, 113, 122
NdeII GATC 5 cut(s) 126, 156, 186, 220, 255
NlaIII CATG 4 cut(s) 13, 67, 227, 256
NmuCI GTSAC 1 cut(s) 315
PciSI GCTCTTC 2 cut(s) 8, 393
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 59
Pfl23II CGTACG 1 cut(s) 447
PkrI GCNGC 5 cut(s) 20, 82, 104, 115, 139
Ple19I CGATCG 1 cut(s) 129
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Ppu21I YACGTR 3 cut(s) 200, 447, 451
Psp6I CCWGG 2 cut(s) 173, 363
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 2 cut(s) 173, 363
PspLI CGTACG 1 cut(s) 447
PspPI GGNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 86
PvuI CGATCG 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 3 cut(s) 179, 445, 449
RsaNI GTAC 3 cut(s) 178, 444, 448
Rsr2I CGGWCCG 1 cut(s) 120
RsrII CGGWCCG 1 cut(s) 120
SapI GCTCTTC 2 cut(s) 8, 393
SaqAI TTAA 1 cut(s) 463
SatI GCNGC 5 cut(s) 19, 81, 103, 114, 138
Sau3AI GATC 5 cut(s) 126, 156, 186, 220, 255
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 2 cut(s) 175, 365
SfaNI GCATC 3 cut(s) 39, 100, 341
SfcI CTRYAG 2 cut(s) 320, 348
SinI GGWCC 1 cut(s) 120
SnaBI TACGTA 2 cut(s) 447, 451
Sse9I AATT 1 cut(s) 211
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 173, 363
TaiI ACGT 3 cut(s) 202, 449, 453
TaqI TCGA 2 cut(s) 182, 302
TaqII GACCGA 1 cut(s) 108
TasI AATT 1 cut(s) 211
Tru1I TTAA 1 cut(s) 463
Tru9I TTAA 1 cut(s) 463
TscAI CASTG 2 cut(s) 28, 324
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 5 cut(s) 18, 80, 102, 113, 137
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 4 cut(s) 20, 26, 52, 380
TspRI CASTG 2 cut(s) 28, 324
VpaK11BI GGWCC 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.