Rh7CG401700

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014749
Physical Location & Seq
Forward (+)
51332102 .. 51335481
3380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG401700.1

Sequence Viewer

Length: 492 bp
ATGATGAACATGAAGAGCAGCACTGCTACTAAGAAGAAGATGACGATGATGCCGAGGGGGTTCATGTGCCACTCTCAGACAGCAACTGCCGTCTGCGTGAGCAGCGCCGATGCAGCTCGGTCCGCGATCGTCCCAGCTGCTAGAAATACGAGAATGATCAACAACTACAATGCCAGGTACTCGAAGATCGTTGAGTCACGTAGGTCTGGCAATTTAGCTGATCATGGAAAGAAACCAGTCTTGTTGTCTTCCCTGATCAAGAGAGAGTCGGCTTTGAACTACCACCACCATCATCACTCGAAGCCAAAGATGTCACTGCAGAAAACAGCGTCAGTTCTACCTATTACAGATAATGTCTTCCAGGTGGTTGTTATGAGGGTTGCTCTTCATTGTCAAGGATGTGCTGGAAAAGTGAAGAAACATCTTTCTAAAATGGAAGGTACGTACGTATTTACTATATATTTAATTGATCTGCTATATATGTATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

163

Amino Acids

18.29

Weight (kDa)

10.13

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014749)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30890
malus_domestica MD08G1221300.v1.1 MD15G1412000.v1.1
prunus_persica Prupe.1G558400_v2.0.a1 Prupe.1G558400_v2.0.a1
pyrus_communis pycom08g19190 pycom15g36680
rosa_chinensis RchiOBHm_Chr7g0226171
rosa_laevigata RLG00000001761
rosa_multiflora Rmu_sc0001350.1_g000012
rosa_roxburghii Rroxscaffold_3G00233160
rosa_rugosa Rorug07G0235200
rosa_samantha Rh7AG382200 Rh7BG369200 Rh7CG401700 Rh7DG380600
rosa_wichuraiana Rw7G032000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 125
AciI CCGC 1 cut(s) 123
AfaI GTAC 3 cut(s) 179, 442, 446
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 2 cut(s) 173, 360
AluBI AGCT 3 cut(s) 116, 137, 218
AluI AGCT 3 cut(s) 116, 137, 218
AlwNI CAGNNNCTG 1 cut(s) 86
ApeKI GCWGC 4 cut(s) 18, 102, 113, 137
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 120
AvaII GGWCC 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 432, 465
BbsI GAAGAC 2 cut(s) 240, 349
BbvI GCAGC 4 cut(s) 30, 114, 124, 125
BccI CCATC 1 cut(s) 297
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 175, 362
BclI TGATCA 3 cut(s) 156, 220, 255
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 317
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 4 cut(s) 19, 103, 114, 138
BlsI GCNGC 4 cut(s) 20, 104, 115, 139
Bme1390I CCNGG 2 cut(s) 175, 362
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 175, 362
BmsI GCATC 2 cut(s) 39, 100
BpiI GAAGAC 2 cut(s) 240, 349
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BsaAI YACGTR 3 cut(s) 200, 444, 448
BsaJI CCNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 2 cut(s) 175, 362
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 404
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 236
BseXI GCAGC 4 cut(s) 30, 114, 124, 125
BseYI CCCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 129
BsiWI CGTACG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 116
Bsp143I GATC 6 cut(s) 126, 156, 186, 220, 255, 469
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 321
BspQI GCTCTTC 2 cut(s) 8, 390
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 6 cut(s) 126, 156, 186, 220, 255, 469
Bst2UI CCWGG 2 cut(s) 175, 362
Bst6I CTCTTC 2 cut(s) 8, 390
BstBAI YACGTR 3 cut(s) 200, 444, 448
BstDEI CTNAG 2 cut(s) 30, 75
BstF5I GGATG 1 cut(s) 404
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 6 cut(s) 129, 159, 189, 223, 258, 472
BstMBI GATC 6 cut(s) 126, 156, 186, 220, 255, 469
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 3 cut(s) 102, 113, 122
BstNI CCWGG 2 cut(s) 175, 362
BstSCI CCNGG 2 cut(s) 173, 360
BstSFI CTRYAG 1 cut(s) 317
BstSNI TACGTA 2 cut(s) 444, 448
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 4 cut(s) 30, 114, 124, 125
BstV2I GAAGAC 2 cut(s) 240, 349
BtsCI GGATG 1 cut(s) 404
BtsI GCAGTG 2 cut(s) 21, 314
BtsIMutI CAGTG 2 cut(s) 21, 314
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 120
CpoI CGGWCCG 1 cut(s) 120
CseI GACGC 1 cut(s) 318
Csp6I GTAC 3 cut(s) 178, 441, 445
CspI CGGWCCG 1 cut(s) 120
CviAII CATG 3 cut(s) 10, 64, 224
CviJI RGCY 5 cut(s) 116, 137, 218, 272, 304
CviKI_1 RGCY 5 cut(s) 116, 137, 218, 272, 304
CviQI GTAC 3 cut(s) 178, 441, 445
DdeI CTNAG 2 cut(s) 30, 75
DpnI GATC 6 cut(s) 128, 158, 188, 222, 257, 471
DpnII GATC 6 cut(s) 126, 156, 186, 220, 255, 469
Eam1104I CTCTTC 2 cut(s) 8, 390
EarI CTCTTC 2 cut(s) 8, 390
Eco105I TACGTA 2 cut(s) 444, 448
Eco47I GGWCC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 173, 360
FaeI CATG 3 cut(s) 13, 67, 227
FaqI GGGAC 1 cut(s) 116
FatI CATG 3 cut(s) 9, 63, 223
FbaI TGATCA 3 cut(s) 156, 220, 255
Fnu4HI GCNGC 4 cut(s) 19, 103, 114, 138
FokI GGATG 1 cut(s) 411
Fsp4HI GCNGC 4 cut(s) 19, 103, 114, 138
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 106
GluI GCNGC 4 cut(s) 19, 103, 114, 138
GsaI CCCAGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 108
HgaI GACGC 1 cut(s) 318
HhaI GCGC 1 cut(s) 107
Hin1II CATG 3 cut(s) 13, 67, 227
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 2 cut(s) 194, 266
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 431
HpyCH4IV ACGT 3 cut(s) 199, 443, 447
HpyCH4V TGCA 2 cut(s) 113, 319
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 113, 122
HpyF3I CTNAG 2 cut(s) 30, 75
HpySE526I ACGT 3 cut(s) 199, 443, 447
Hsp92II CATG 3 cut(s) 13, 67, 227
HspAI GCGC 1 cut(s) 105
Ksp22I TGATCA 3 cut(s) 156, 220, 255
Kzo9I GATC 6 cut(s) 126, 156, 186, 220, 255, 469
LguI GCTCTTC 2 cut(s) 8, 390
LpnPI CCDG 9 cut(s) 147, 160, 187, 192, 249, 266, 347, 374, 390
Lsp1109I GCAGC 4 cut(s) 30, 114, 124, 125
LweI GCATC 2 cut(s) 39, 100
MaeI CTAG 1 cut(s) 141
MaeII ACGT 3 cut(s) 199, 443, 447
MaeIII GTNAC 2 cut(s) 195, 312
MalI GATC 6 cut(s) 128, 158, 188, 222, 257, 471
MboI GATC 6 cut(s) 126, 156, 186, 220, 255, 469
MboII GAAGA 8 cut(s) 25, 46, 49, 196, 240, 349, 377, 427
MluCI AATT 2 cut(s) 211, 465
MlyI GAGTC 2 cut(s) 203, 275
MnlI CCTC 2 cut(s) 48, 369
MseI TTAA 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 137
MspR9I CCNGG 2 cut(s) 175, 362
MvaI CCWGG 2 cut(s) 175, 362
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 102, 113, 122
NdeII GATC 6 cut(s) 126, 156, 186, 220, 255, 469
NlaIII CATG 3 cut(s) 13, 67, 227
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 195, 312
PciSI GCTCTTC 2 cut(s) 8, 390
PcsI WCGNNNNNNNCGW 1 cut(s) 50
Pfl23II CGTACG 1 cut(s) 444
PkrI GCNGC 4 cut(s) 20, 104, 115, 139
Ple19I CGATCG 1 cut(s) 129
PleI GAGTC 2 cut(s) 202, 274
PpsI GAGTC 2 cut(s) 202, 274
Ppu21I YACGTR 3 cut(s) 200, 444, 448
Psp6I CCWGG 2 cut(s) 173, 360
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 2 cut(s) 173, 360
PspLI CGTACG 1 cut(s) 444
PspPI GGNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 321
PstNI CAGNNNCTG 1 cut(s) 86
PvuI CGATCG 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 3 cut(s) 179, 442, 446
RsaNI GTAC 3 cut(s) 178, 441, 445
Rsr2I CGGWCCG 1 cut(s) 120
RsrII CGGWCCG 1 cut(s) 120
SapI GCTCTTC 2 cut(s) 8, 390
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 4 cut(s) 19, 103, 114, 138
Sau3AI GATC 6 cut(s) 126, 156, 186, 220, 255, 469
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 2 cut(s) 203, 275
ScrFI CCNGG 2 cut(s) 175, 362
SfaNI GCATC 2 cut(s) 39, 100
SfcI CTRYAG 1 cut(s) 317
SinI GGWCC 1 cut(s) 120
SnaBI TACGTA 2 cut(s) 444, 448
Sse9I AATT 2 cut(s) 211, 465
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 173, 360
TaiI ACGT 3 cut(s) 202, 446, 450
TaqI TCGA 2 cut(s) 182, 299
TaqII GACCGA 1 cut(s) 108
TasI AATT 2 cut(s) 211, 465
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 2 cut(s) 28, 321
TseFI GTSAC 2 cut(s) 195, 312
TseI GCWGC 4 cut(s) 18, 102, 113, 137
Tsp45I GTSAC 2 cut(s) 195, 312
TspDTI ATGAA 4 cut(s) 20, 26, 52, 377
TspRI CASTG 2 cut(s) 28, 321
VpaK11BI GGWCC 1 cut(s) 120
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.