Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Forward (+)

455688 .. 458164

Gene Structure 2477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02305.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCTGATAATTGTATCAGACTTCTTCACTCAGCCTCTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGTGCCTATTGTAAGCCATGATATATCTTTGAAGCTTCCAAAAGAATTTGATGCTAGAACCGCTTGGTCACAGTGCACCAGTATTGGAAGGATCTTAGATCAGGGTCACTGTGGTTCTTGCTGGGCCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGAATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGCGGTCAAGGTTGTAATGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGTGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCCGCTTACCCTACACCAAAATGTGCAAGGAAATGTGTTAGCGGAAACCAGCTTTGGCGTGAATCAAAACATTATGGTGTTAGTGCGTACAAGGTCAGATCTCACCCTGATGACATTATGGCAGAAGTTTACAAAAATGGACCTGTTGAGGTTGCCTTCACTGTTTACGAGGACTTTGCGCATTACAAATCTGGAGTGTACAAGCACATAACAGGTACTAACATTGGAGGTCATGCTGTTAAACTTATTGGCTGGGGAACTTCTGATGACGGTGAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGATGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACATGGTGTTGTAGCTGGTTTACCTTCAGACAGGAACGTAGTTAAAGGTATTACTACTTCAGATGATCTTCTTGTTTCCTCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

362

Amino Acids

40.03

Weight (kDa)

6.45

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Propeptide_C1	PF08127	46 - 88	1.9e-12	Peptidase family C1 propeptide
Peptidase_C1	PF00112	106 - 339	5.1e-68	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	813
AccB7I	CCANNNNNTGG	1 cut(s)	179
AciI	CCGC	5 cut(s)	342, 510, 550, 636, 675
AclWI	GGATC	2 cut(s)	380, 584
AcsI	RAATTY	2 cut(s)	272, 326
AcuI	CTGAAG	4 cut(s)	122, 600, 1011, 1044
AfaI	GTAC	5 cut(s)	554, 722, 833, 850, 962
AfiI	CCNNNNNNNGG	2 cut(s)	179, 946
AgsI	TTSAA	6 cut(s)	76, 199, 313, 422, 967, 1001
AjuI	GAANNNNNNNTTGG	2 cut(s)	670, 702
AleI	CACNNNNGTG	1 cut(s)	567
AluBI	AGCT	6 cut(s)	98, 191, 316, 685, 945, 1016
AluI	AGCT	6 cut(s)	98, 191, 316, 685, 945, 1016
Alw21I	GWGCWC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	355
AlwI	GGATC	2 cut(s)	380, 584
AlwNI	CAGNNNCTG	3 cut(s)	38, 121, 441
Ama87I	CYCGRG	1 cut(s)	622
AoxI	GGCC	1 cut(s)	405
ApaLI	GTGCAC	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	95, 542
ApoI	RAATTY	2 cut(s)	272, 326
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AspLEI	GCGC	2 cut(s)	240, 814
AspS9I	GGNCC	2 cut(s)	405, 773
AsuC2I	CCSGG	2 cut(s)	623, 624
AsuHPI	GGTGA	3 cut(s)	728, 917, 962
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	773
BaeGI	GKGCMC	1 cut(s)	359
BarI	GAAGNNNNNNTAC	2 cut(s)	1042, 1074
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	107, 529
BccI	CCATC	2 cut(s)	177, 950
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciVI	GTATCC	1 cut(s)	524
BcnI	CCSGG	2 cut(s)	623, 624
BfaI	CTAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	731
BisI	GCNGC	2 cut(s)	96, 543
BlsI	GCNGC	2 cut(s)	97, 544
Bme1390I	CCNGG	2 cut(s)	623, 624
Bme18I	GGWCC	1 cut(s)	773
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	2 cut(s)	405, 773
BmiI	GGNNCC	1 cut(s)	938
BmrFI	CCNGG	2 cut(s)	623, 624
BmsI	GCATC	2 cut(s)	322, 453
BpmI	CTGGAG	1 cut(s)	846
BpuMI	CCSGG	2 cut(s)	623, 624
BsaJI	CCNNGG	2 cut(s)	565, 622
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 946
Bse1I	ACTGG	2 cut(s)	360, 613
BseDI	CCNNGG	2 cut(s)	565, 622
BseGI	GGATG	3 cut(s)	68, 188, 632
BseLI	CCNNNNNNNGG	2 cut(s)	179, 946
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	360, 613
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	2 cut(s)	107, 529
BseYI	CCCAGC	3 cut(s)	402, 885, 945
BshFI	GGCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	359
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	623
BslI	CCNNNNNNNGG	2 cut(s)	179, 946
BsnI	GGCC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp1407I	TGTACA	1 cut(s)	831
Bsp143I	GATC	8 cut(s)	202, 372, 379, 481, 589, 731, 969, 1066
BspACI	CCGC	5 cut(s)	342, 510, 550, 636, 675
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	938
BspPI	GGATC	2 cut(s)	380, 584
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	2 cut(s)	360, 613
BssECI	CCNNGG	2 cut(s)	565, 622
BssMI	GATC	8 cut(s)	202, 372, 379, 481, 589, 731, 969, 1066
Bst4CI	ACNGT	7 cut(s)	223, 354, 392, 429, 569, 796, 905
Bst6I	CTCTTC	1 cut(s)	576
BstAUI	TGTACA	1 cut(s)	831
BstC8I	GCNNGC	2 cut(s)	617, 924
BstDEI	CTNAG	2 cut(s)	31, 376
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	3 cut(s)	68, 188, 632
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	240, 814
BstKTI	GATC	8 cut(s)	205, 375, 382, 484, 592, 734, 972, 1069
BstMBI	GATC	8 cut(s)	202, 372, 379, 481, 589, 731, 969, 1066
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 341, 413
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	2 cut(s)	621, 622
BstSLI	GKGCMC	1 cut(s)	359
BstV1I	GCAGC	2 cut(s)	107, 529
BstX2I	RGATCY	2 cut(s)	372, 731
BstYI	RGATCY	2 cut(s)	372, 731
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	407
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	68, 188, 632
BtsIMutI	CAGTG	6 cut(s)	219, 359, 388, 425, 576, 792
Cac8I	GCNNGC	2 cut(s)	617, 924
CaiI	CAGNNNCTG	3 cut(s)	38, 121, 441
CfoI	GCGC	2 cut(s)	240, 814
Cfr13I	GGNCC	2 cut(s)	405, 773
Cfr9I	CCCGGG	1 cut(s)	622
Csp6I	GTAC	5 cut(s)	553, 721, 832, 849, 961
CviAII	CATG	6 cut(s)	129, 299, 457, 492, 866, 1004
CviQI	GTAC	5 cut(s)	553, 721, 832, 849, 961
DdeI	CTNAG	2 cut(s)	31, 376
DpnI	GATC	8 cut(s)	204, 374, 381, 483, 591, 733, 971, 1068
DpnII	GATC	8 cut(s)	202, 372, 379, 481, 589, 731, 969, 1066
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	773
Eco57I	CTGAAG	4 cut(s)	122, 600, 1011, 1044
Eco88I	CYCGRG	1 cut(s)	622
FaeI	CATG	6 cut(s)	132, 302, 460, 495, 869, 1007
FatI	CATG	6 cut(s)	128, 298, 456, 491, 865, 1003
FauI	CCCGC	1 cut(s)	643
Fnu4HI	GCNGC	2 cut(s)	96, 543
FokI	GGATG	3 cut(s)	55, 195, 639
Fsp4HI	GCNGC	2 cut(s)	96, 543
FspBI	CTAG	1 cut(s)	336
FspI	TGCGCA	1 cut(s)	813
GlaI	GCGC	2 cut(s)	239, 813
GluI	GCNGC	2 cut(s)	96, 543
GsaI	CCCAGC	3 cut(s)	406, 889, 949
GsuI	CTGGAG	1 cut(s)	846
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	623
HhaI	GCGC	2 cut(s)	240, 814
Hin1II	CATG	6 cut(s)	132, 302, 460, 495, 869, 1007
Hin6I	GCGC	2 cut(s)	238, 812
HinP1I	GCGC	2 cut(s)	238, 812
HindIII	AAGCTT	2 cut(s)	189, 314
HinfI	GANTC	6 cut(s)	133, 169, 422, 438, 501, 695
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	3 cut(s)	728, 917, 962
Hpy166II	GTNNAC	6 cut(s)	357, 632, 763, 799, 832, 1022
Hpy188I	TCNGA	7 cut(s)	20, 141, 433, 731, 898, 1030, 1063
Hpy188III	TCNNGA	3 cut(s)	825, 967, 973
Hpy8I	GTNNAC	6 cut(s)	357, 632, 763, 799, 832, 1022
HpyAV	CCTTC	5 cut(s)	82, 251, 363, 799, 1035
HpyCH4III	ACNGT	7 cut(s)	223, 354, 392, 429, 569, 796, 905
HpyCH4IV	ACGT	1 cut(s)	1038
HpyCH4V	TGCA	8 cut(s)	85, 95, 212, 227, 357, 444, 659, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 341, 413
HpyF3I	CTNAG	2 cut(s)	31, 376
HpySE526I	ACGT	1 cut(s)	1038
Hsp92II	CATG	6 cut(s)	132, 302, 460, 495, 869, 1007
HspAI	GCGC	2 cut(s)	238, 812
Kzo9I	GATC	8 cut(s)	202, 372, 379, 481, 589, 731, 969, 1066
Lsp1109I	GCAGC	2 cut(s)	107, 529
LweI	GCATC	2 cut(s)	322, 453
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	1038
MaeIII	GTNAC	3 cut(s)	348, 386, 574
MalI	GATC	8 cut(s)	204, 374, 381, 483, 591, 733, 971, 1068
MboI	GATC	8 cut(s)	202, 372, 379, 481, 589, 731, 969, 1066
MboII	GAAGA	6 cut(s)	17, 37, 128, 593, 920, 1061
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	2 cut(s)	372, 731
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	5 cut(s)	10, 63, 272, 326, 537
MnlI	CCTC	6 cut(s)	46, 136, 775, 796, 854, 971
MseI	TTAA	6 cut(s)	234, 252, 558, 873, 1044, 1087
MslI	CAYNNNNRTG	4 cut(s)	567, 652, 708, 741
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	2 cut(s)	623, 624
MunI	CAATTG	1 cut(s)	537
MwoI	GCNNNNNNNGC	3 cut(s)	224, 341, 413
NciI	CCSGG	2 cut(s)	623, 624
NdeII	GATC	8 cut(s)	202, 372, 379, 481, 589, 731, 969, 1066
NlaIII	CATG	6 cut(s)	132, 302, 460, 495, 869, 1007
NlaIV	GGNNCC	1 cut(s)	938
NmuCI	GTSAC	3 cut(s)	348, 386, 574
NsbI	TGCGCA	1 cut(s)	813
NspI	RCATGY	1 cut(s)	495
OliI	CACNNNNGTG	1 cut(s)	567
PfeI	GAWTC	6 cut(s)	133, 169, 422, 438, 501, 695
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	97, 544
PspFI	CCCAGC	3 cut(s)	402, 885, 945
PspN4I	GGNNCC	1 cut(s)	938
PspPI	GGNCC	2 cut(s)	405, 773
PstNI	CAGNNNCTG	3 cut(s)	38, 121, 441
PsuI	RGATCY	2 cut(s)	372, 731
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	5 cut(s)	554, 722, 833, 850, 962
RsaNI	GTAC	5 cut(s)	553, 721, 832, 849, 961
RseI	CAYNNNNRTG	4 cut(s)	567, 652, 708, 741
SaqAI	TTAA	6 cut(s)	234, 252, 558, 873, 1044, 1087
SatI	GCNGC	2 cut(s)	96, 543
Sau3AI	GATC	8 cut(s)	202, 372, 379, 481, 589, 731, 969, 1066
Sau96I	GGNCC	2 cut(s)	405, 773
ScrFI	CCNGG	2 cut(s)	623, 624
SduI	GDGCHC	1 cut(s)	359
SfaNI	GCATC	2 cut(s)	322, 453
SinI	GGWCC	1 cut(s)	773
SmaI	CCCGGG	1 cut(s)	624
SmiMI	CAYNNNNRTG	4 cut(s)	567, 652, 708, 741
Sse9I	AATT	5 cut(s)	10, 63, 272, 326, 537
SsiI	CCGC	5 cut(s)	342, 510, 550, 636, 675
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	621, 622
TaaI	ACNGT	7 cut(s)	223, 354, 392, 429, 569, 796, 905
TaiI	ACGT	1 cut(s)	1041
TaqI	TCGA	1 cut(s)	600
TasI	AATT	5 cut(s)	10, 63, 272, 326, 537
TatI	WGTACW	1 cut(s)	831
TfiI	GAWTC	6 cut(s)	133, 169, 422, 438, 501, 695
Tru1I	TTAA	6 cut(s)	234, 252, 558, 873, 1044, 1087
Tru9I	TTAA	6 cut(s)	234, 252, 558, 873, 1044, 1087
TscAI	CASTG	6 cut(s)	226, 359, 395, 432, 583, 799
TseFI	GTSAC	3 cut(s)	348, 386, 574
TseI	GCWGC	2 cut(s)	95, 542
Tsp45I	GTSAC	3 cut(s)	348, 386, 574
TspDTI	ATGAA	2 cut(s)	57, 473
TspGWI	ACGGA	1 cut(s)	284
TspMI	CCCGGG	1 cut(s)	622
TspRI	CASTG	6 cut(s)	226, 359, 395, 432, 583, 799
Van91I	CCANNNNNTGG	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	773
XapI	RAATTY	2 cut(s)	272, 326
XceI	RCATGY	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	2 cut(s)	180, 543
XmaI	CCCGGG	1 cut(s)	622
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.