Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Forward (+)

694582 .. 697206

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCTGTTTACAATACCAAACTCTGTTTGGCCTCTGTTTTCTTGCTCTTAGGGCTTCTCTTGGCTTTTGACTTGAAGGGTATAGAAGCAGAAAGTCTTACCAAACAGAAACTGGACTCGAAGATACTTCAGGATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACTGTTGCAGAGTTTAAGCGTCTTCTCGGTGTTAAACCAACACCAAAGAAGCATTTCTTAGGTGTTCCTATTGTGAGCCATGATCCATCTTTGAAGCTACCTAAAGCTTTTGATGCTAGAACTGCTTGGCCACAGTGCACTAGTATTGGAAACATCTTAGATCAGGGACATTGTGGTTCTTGCTGGGCATTTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATGAACATTTCTTTATCAGTAAATGATCTCCTAGCTTGTTGTGGATTCCGTTGTGGTGATGGTTGTGACGGTGGCTATCCAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGGCATATCCTACACCGAAATGTTCGAGGAAATGCGTTAGCGACAACAAACTATGGAGCGAGTCGAAGCATTACAGTGTTAGTACATACACTGTGAAATCTAATCCACAAGATATCATGGCAGAGGTTTATAAGAATGGACCTGTTGAAGTCTCTTTTACCGTTTATGAGGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACATTGGAGGTCATGCTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGGTTATTTCATGATAAGGAGAGGAACTAATGAATGTGGAATTGAAGATGAACCAGTAGCTGGTTTGCCTTCAAGCAAGAATGTGTTTAGGGTTGATACCGGTTCGAATGATCTTCCGGTTGCATCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

359

Amino Acids

39.42

Weight (kDa)

5.79

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Propeptide_C1	PF08127	43 - 85	8.6e-14	Peptidase family C1 propeptide
Peptidase_C1	PF00112	103 - 337	9.9e-67	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AccB7I	CCANNNNNTGG	2 cut(s)	170, 1007
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	2 cut(s)	287, 575
AcoI	YGGCCR	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	2 cut(s)	170, 1007
AgeI	ACCGGT	1 cut(s)	1046
AgsI	TTSAA	7 cut(s)	76, 204, 304, 413, 773, 992, 1020
AhlI	ACTAGT	1 cut(s)	350
AluBI	AGCT	5 cut(s)	182, 307, 317, 482, 1007
AluI	AGCT	5 cut(s)	182, 307, 317, 482, 1007
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	1 cut(s)	781
Alw44I	GTGCAC	1 cut(s)	346
AlwI	GGATC	2 cut(s)	287, 575
AlwNI	CAGNNNCTG	3 cut(s)	112, 936, 1007
Ama87I	CYCGRG	1 cut(s)	613
AoxI	GGCC	2 cut(s)	30, 338
ApaLI	GTGCAC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	182, 533
ArsI	GACNNNNNNTTYG	2 cut(s)	804, 836
AsiGI	ACCGGT	1 cut(s)	1046
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	764
AsuC2I	CCSGG	2 cut(s)	614, 615
AsuHPI	GGTGA	3 cut(s)	515, 602, 953
AsuII	TTCGAA	1 cut(s)	1052
AvaI	CYCGRG	1 cut(s)	613
AvaII	GGWCC	1 cut(s)	764
BaeGI	GKGCMC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	169, 520
BccI	CCATC	5 cut(s)	168, 304, 500, 907, 941
BciVI	GTATCC	1 cut(s)	446
BcnI	CCSGG	2 cut(s)	614, 615
BcoDI	GTCTC	1 cut(s)	781
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	4 cut(s)	327, 351, 479, 885
BfuI	GTATCC	1 cut(s)	446
BisI	GCNGC	2 cut(s)	183, 534
BlsI	GCNGC	2 cut(s)	184, 535
Bme1390I	CCNGG	2 cut(s)	614, 615
Bme18I	GGWCC	1 cut(s)	764
BmeT110I	CYCGRG	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	764
BmrFI	CCNGG	2 cut(s)	614, 615
BmsI	GCATC	2 cut(s)	313, 593
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	837
Bpu14I	TTCGAA	1 cut(s)	1052
BpuMI	CCSGG	2 cut(s)	614, 615
Bsa29I	ATCGAT	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	613
BsaWI	WCCGGW	3 cut(s)	599, 1046, 1063
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 1007
Bse118I	RCCGGY	2 cut(s)	625, 1046
Bse1I	ACTGG	2 cut(s)	117, 1001
BseCI	ATCGAT	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	613
BseGI	GGATG	3 cut(s)	139, 179, 608
BseLI	CCNNNNNNNGG	2 cut(s)	170, 1007
BseNI	ACTGG	2 cut(s)	117, 1001
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	2 cut(s)	169, 520
BseYI	CCCAGC	2 cut(s)	393, 936
BshFI	GGCC	2 cut(s)	32, 340
BshTI	ACCGGT	1 cut(s)	1046
BshVI	ATCGAT	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	350
BsiHKCI	CYCGRG	1 cut(s)	613
BsiSI	CCGG	5 cut(s)	600, 614, 626, 1047, 1064
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	170, 1007
BsmAI	GTCTC	1 cut(s)	781
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	2 cut(s)	32, 340
BsoBI	CYCGRG	1 cut(s)	613
Bsp119I	TTCGAA	1 cut(s)	1052
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	6 cut(s)	193, 292, 370, 472, 580, 1057
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	2 cut(s)	32, 340
BspDI	ATCGAT	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	957
BspPI	GGATC	2 cut(s)	287, 575
BspT104I	TTCGAA	1 cut(s)	1052
BsrFI	RCCGGY	2 cut(s)	625, 1046
BsrI	ACTGG	2 cut(s)	117, 1001
BssAI	RCCGGY	2 cut(s)	625, 1046
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	6 cut(s)	193, 292, 370, 472, 580, 1057
Bst4CI	ACNGT	6 cut(s)	214, 345, 518, 701, 718, 787
Bst6I	CTCTTC	1 cut(s)	567
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	1052
BstDEI	CTNAG	3 cut(s)	49, 268, 367
BstF5I	GGATG	3 cut(s)	139, 179, 608
BstKTI	GATC	6 cut(s)	196, 295, 373, 475, 583, 1060
BstMAI	GTCTC	1 cut(s)	781
BstMBI	GATC	6 cut(s)	193, 292, 370, 472, 580, 1057
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 215, 323, 332, 404
BstSCI	CCNGG	2 cut(s)	612, 613
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	2 cut(s)	169, 520
BstV2I	GAAGAC	1 cut(s)	224
Bsu15I	ATCGAT	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	32, 340
BsuTUI	ATCGAT	1 cut(s)	196
BtsCI	GGATG	3 cut(s)	139, 179, 608
BtsI	GCAGTG	1 cut(s)	895
BtsIMutI	CAGTG	5 cut(s)	210, 350, 706, 714, 895
CaiI	CAGNNNCTG	3 cut(s)	112, 936, 1007
CciI	TCATGA	1 cut(s)	957
Cfr10I	RCCGGY	2 cut(s)	625, 1046
Cfr13I	GGNCC	1 cut(s)	764
Cfr9I	CCCGGG	1 cut(s)	613
ClaI	ATCGAT	1 cut(s)	196
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	708
CspAI	ACCGGT	1 cut(s)	1046
CviAII	CATG	5 cut(s)	290, 448, 742, 857, 958
CviQI	GTAC	1 cut(s)	708
DdeI	CTNAG	3 cut(s)	49, 268, 367
DpnI	GATC	6 cut(s)	195, 294, 372, 474, 582, 1059
DpnII	GATC	6 cut(s)	193, 292, 370, 472, 580, 1057
EaeI	YGGCCR	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	764
Eco57I	CTGAAG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	613
EcoRV	GATATC	1 cut(s)	739
FaeI	CATG	5 cut(s)	293, 451, 745, 860, 961
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	5 cut(s)	289, 447, 741, 856, 957
Fnu4HI	GCNGC	2 cut(s)	183, 534
FokI	GGATG	3 cut(s)	146, 186, 615
Fsp4HI	GCNGC	2 cut(s)	183, 534
FspBI	CTAG	4 cut(s)	327, 351, 479, 885
GluI	GCNGC	2 cut(s)	183, 534
GsaI	CCCAGC	2 cut(s)	397, 940
GsuI	CTGGAG	1 cut(s)	837
HaeIII	GGCC	2 cut(s)	32, 340
HapII	CCGG	5 cut(s)	600, 614, 626, 1047, 1064
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	5 cut(s)	293, 451, 745, 860, 961
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	6 cut(s)	116, 413, 429, 492, 686, 819
HpaII	CCGG	5 cut(s)	600, 614, 626, 1047, 1064
HphI	GGTGA	3 cut(s)	515, 602, 953
Hpy166II	GTNNAC	3 cut(s)	10, 154, 348
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	3 cut(s)	131, 816, 958
Hpy8I	GTNNAC	3 cut(s)	10, 154, 348
HpyAV	CCTTC	3 cut(s)	70, 887, 1026
HpyCH4III	ACNGT	6 cut(s)	214, 345, 518, 701, 718, 787
HpyCH4V	TGCA	3 cut(s)	218, 348, 1070
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 215, 323, 332, 404
HpyF3I	CTNAG	3 cut(s)	49, 268, 367
Hsp92II	CATG	5 cut(s)	293, 451, 745, 860, 961
Kzo9I	GATC	6 cut(s)	193, 292, 370, 472, 580, 1057
LmnI	GCTCC	1 cut(s)	681
Lsp1109I	GCAGC	2 cut(s)	169, 520
LweI	GCATC	2 cut(s)	313, 593
MaeI	CTAG	4 cut(s)	327, 351, 479, 885
MaeIII	GTNAC	2 cut(s)	512, 565
MalI	GATC	6 cut(s)	195, 294, 372, 474, 582, 1059
MboI	GATC	6 cut(s)	193, 292, 370, 472, 580, 1057
MboII	GAAGA	7 cut(s)	133, 157, 224, 584, 911, 1004, 1052
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	350
MlsI	TGGCCA	1 cut(s)	340
MluCI	AATT	3 cut(s)	440, 528, 987
MluNI	TGGCCA	1 cut(s)	340
MlyI	GAGTC	3 cut(s)	110, 695, 828
MnlI	CCTC	7 cut(s)	43, 645, 742, 787, 845, 926, 962
Mox20I	TGGCCA	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	340
MseI	TTAA	4 cut(s)	225, 243, 864, 1078
MslI	CAYNNNNRTG	2 cut(s)	643, 699
Msp20I	TGGCCA	1 cut(s)	340
MspI	CCGG	5 cut(s)	600, 614, 626, 1047, 1064
MspR9I	CCNGG	2 cut(s)	614, 615
MunI	CAATTG	1 cut(s)	528
MwoI	GCNNNNNNNGC	5 cut(s)	52, 215, 323, 332, 404
NciI	CCSGG	2 cut(s)	614, 615
NdeII	GATC	6 cut(s)	193, 292, 370, 472, 580, 1057
NlaIII	CATG	5 cut(s)	293, 451, 745, 860, 961
NmuCI	GTSAC	2 cut(s)	512, 565
NspV	TTCGAA	1 cut(s)	1052
PagI	TCATGA	1 cut(s)	957
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	413, 429, 492
PflMI	CCANNNNNTGG	2 cut(s)	170, 1007
PinAI	ACCGGT	1 cut(s)	1046
PkrI	GCNGC	2 cut(s)	184, 535
PleI	GAGTC	3 cut(s)	110, 694, 827
PpsI	GAGTC	3 cut(s)	110, 694, 827
PsiI	TTATAA	1 cut(s)	756
PspFI	CCCAGC	2 cut(s)	393, 936
PspPI	GGNCC	1 cut(s)	764
PstNI	CAGNNNCTG	3 cut(s)	112, 936, 1007
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
RseI	CAYNNNNRTG	2 cut(s)	643, 699
SaqAI	TTAA	4 cut(s)	225, 243, 864, 1078
SatI	GCNGC	2 cut(s)	183, 534
Sau3AI	GATC	6 cut(s)	193, 292, 370, 472, 580, 1057
Sau96I	GGNCC	1 cut(s)	764
SchI	GAGTC	3 cut(s)	110, 695, 828
ScrFI	CCNGG	2 cut(s)	614, 615
SduI	GDGCHC	1 cut(s)	350
SfaNI	GCATC	2 cut(s)	313, 593
SfuI	TTCGAA	1 cut(s)	1052
SinI	GGWCC	1 cut(s)	764
SmaI	CCCGGG	1 cut(s)	615
SmiMI	CAYNNNNRTG	2 cut(s)	643, 699
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	3 cut(s)	440, 528, 987
SsiI	CCGC	1 cut(s)	558
SspMI	CTAG	4 cut(s)	327, 351, 479, 885
StyD4I	CCNGG	2 cut(s)	612, 613
TaaI	ACNGT	6 cut(s)	214, 345, 518, 701, 718, 787
TaqI	TCGA	5 cut(s)	119, 196, 650, 689, 1052
TasI	AATT	3 cut(s)	440, 528, 987
TatI	WGTACW	1 cut(s)	707
TfiI	GAWTC	3 cut(s)	413, 429, 492
Tru1I	TTAA	4 cut(s)	225, 243, 864, 1078
Tru9I	TTAA	4 cut(s)	225, 243, 864, 1078
TscAI	CASTG	5 cut(s)	217, 350, 706, 721, 895
TseFI	GTSAC	2 cut(s)	512, 565
TseI	GCWGC	2 cut(s)	182, 533
Tsp45I	GTSAC	2 cut(s)	512, 565
TspDTI	ATGAA	4 cut(s)	464, 946, 993, 1011
TspGWI	ACGGA	1 cut(s)	485
TspMI	CCCGGG	1 cut(s)	613
TspRI	CASTG	5 cut(s)	217, 350, 706, 721, 895
Van91I	CCANNNNNTGG	2 cut(s)	170, 1007
VneI	GTGCAC	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	764
XcmI	CCANNNNNNNNNTGG	4 cut(s)	25, 109, 171, 534
XmaI	CCCGGG	1 cut(s)	613
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	4 cut(s)	327, 351, 479, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.