Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Forward (+)

18887305 .. 18890668

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAAGACGATGATGGCGGCGAAGCTCTCTTTTCTGCCTCTGCTCTTACTTTTTGGGGCCATTTGGCAGTTTGTTGCAGCAAAACCGCTTTCCCAGAGTAAGCTCCAGTCTCCTGTTCTTCAGGAGTCAATCATTAAGGAGATAAATGAAAACCCCGAGGCAGGATGGCAAGCTGCCATGAGTCCTCGCCTCTCCAATTACACTGTTGGTGAGTTTATGCATCTTCTGGGAGTCAAACCAATACCCAAAAAGGAATTGTTGGGTGTACCCATAGTAAGTCATCCGAAATCTTTGAAGTTGCCAAATAGTTTTGATGCAAGGGAGGCTTGGTCTCAGTGCACCACCATTGGACGAATTCTAGATCAGGGTCACTGTGGCTCTTGTTGGGCTTTTGCTGCTGTTGAAGCACTATCAGATCGTTTCTGCATCCAATTTGGCAAGAACACATCTCTGTCTGTTAATGATCTCTTAGCGTGCTGTGGTTTTATGTGTGGAAATGGTTGTGATGGTGGAATTCCAATTTATGCATGGCGTTACTTTGTCCACCACGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATCAAACTGGCTGTTCCCACCCTGGTTGTGAGCCCGCATATCCTACACCAAAGTGCATTAGAAAGTGTGTAGATGGGAACCAGATGTGGAACCAGGCAAAGCGTTACAGTGTCAGCGCATATAGGATCCATTCTGATCCGCACAGTATTATGGCAGAAGTCTATAAGAACGGACCAGTTGAAGTTGCCTTCACCGTTTATGAGGATTTTGCATACTATAAATCTGGAGTTTACAAGCATATTAAAGGTGATGCTCTGGGAGGTCATGCTGTTAAGCTAATTGGGTGGGGCACATCTGACGCTGGAGAGGACTATTGGCTTATGGCAAATCAGTGGAATAGAAGCTGGGGAGATGATGGTTACTTCATGATCAAAAGGGGAACAAACGAGTGTGGAATCGAAGAGGATGTGGTTGCTGGCTTGCCTTCATCGAAAAATTTTATAAGCGAGGTTGCAAGCATGGATGCTTTCGGGGATGTTGCTTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

357

Amino Acids

39.4

Weight (kDa)

5.94

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Propeptide_C1	PF08127	40 - 80	1.3e-08	Peptidase family C1 propeptide
Peptidase_C1	PF00112	100 - 334	9.4e-68	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1025
AciI	CCGC	4 cut(s)	17, 86, 618, 722
AclWI	GGATC	3 cut(s)	703, 713, 716
AcsI	RAATTY	3 cut(s)	354, 513, 1018
AcuI	CTGAAG	3 cut(s)	104, 582, 1050
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	295, 404, 764
AjnI	CCWGG	2 cut(s)	604, 675
AleI	CACNNNNGTG	2 cut(s)	549, 634
AluBI	AGCT	5 cut(s)	25, 103, 173, 859, 927
AluI	AGCT	5 cut(s)	25, 103, 173, 859, 927
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	2 cut(s)	114, 336
Alw44I	GTGCAC	1 cut(s)	337
AlwI	GGATC	3 cut(s)	703, 713, 716
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	57
ApaLI	GTGCAC	1 cut(s)	337
ApeKI	GCWGC	3 cut(s)	77, 173, 395
ApoI	RAATTY	3 cut(s)	354, 513, 1018
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
AspLEI	GCGC	1 cut(s)	701
AspS9I	GGNCC	2 cut(s)	57, 755
AsuHPI	GGTGA	3 cut(s)	221, 766, 842
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	755
BaeGI	GKGCMC	2 cut(s)	341, 875
BamHI	GGATCC	1 cut(s)	708
BanII	GRGCYC	1 cut(s)	618
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	3 cut(s)	89, 160, 382
BccI	CCATC	5 cut(s)	7, 159, 500, 650, 932
BciT130I	CCWGG	2 cut(s)	606, 677
BclI	TGATCA	2 cut(s)	583, 951
BcoDI	GTCTC	2 cut(s)	114, 336
BfaI	CTAG	1 cut(s)	359
BisI	GCNGC	4 cut(s)	18, 78, 174, 396
BlsI	GCNGC	4 cut(s)	19, 79, 175, 397
Bme1390I	CCNGG	2 cut(s)	606, 677
Bme18I	GGWCC	1 cut(s)	755
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	57, 755
BmiI	GGNNCC	4 cut(s)	58, 662, 674, 710
BmrFI	CCNGG	2 cut(s)	606, 677
BmsI	GCATC	5 cut(s)	229, 304, 435, 823, 1036
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	3 cut(s)	89, 828, 906
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	156, 547, 604
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	3 cut(s)	106, 595, 758
BseBI	CCWGG	2 cut(s)	606, 677
BseDI	CCNNGG	3 cut(s)	156, 547, 604
BseGI	GGATG	6 cut(s)	170, 280, 426, 994, 1051, 1063
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	3 cut(s)	106, 595, 758
BseSI	GKGCMC	2 cut(s)	341, 875
BseXI	GCAGC	3 cut(s)	89, 160, 382
BseYI	CCCAGC	1 cut(s)	927
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	114, 336
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	336
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	341, 618, 875
Bsp143I	GATC	7 cut(s)	361, 415, 463, 583, 708, 718, 951
BspACI	CCGC	4 cut(s)	17, 86, 618, 722
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	346
BspHI	TCATGA	1 cut(s)	948
BspLI	GGNNCC	4 cut(s)	58, 662, 674, 710
BspPI	GGATC	3 cut(s)	703, 713, 716
BspTNI	GGTCTC	1 cut(s)	336
BsrI	ACTGG	3 cut(s)	106, 595, 758
BssECI	CCNNGG	3 cut(s)	156, 547, 604
BssMI	GATC	7 cut(s)	361, 415, 463, 583, 708, 718, 951
Bst2UI	CCWGG	2 cut(s)	606, 677
Bst4CI	ACNGT	6 cut(s)	205, 374, 551, 692, 728, 778
Bst6I	CTCTTC	2 cut(s)	558, 978
BstC8I	GCNNGC	6 cut(s)	171, 475, 618, 1000, 1004, 1039
BstDEI	CTNAG	2 cut(s)	333, 469
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	6 cut(s)	170, 280, 426, 994, 1051, 1063
BstHHI	GCGC	1 cut(s)	701
BstKTI	GATC	7 cut(s)	364, 418, 466, 586, 711, 721, 954
BstMAI	GTCTC	2 cut(s)	114, 336
BstMBI	GATC	7 cut(s)	361, 415, 463, 583, 708, 718, 951
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 395, 404
BstNI	CCWGG	2 cut(s)	606, 677
BstSCI	CCNGG	2 cut(s)	604, 675
BstSLI	GKGCMC	2 cut(s)	341, 875
BstV1I	GCAGC	3 cut(s)	89, 160, 382
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	708
BstYI	RGATCY	1 cut(s)	708
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	6 cut(s)	170, 280, 426, 994, 1051, 1063
BtsIMutI	CAGTG	6 cut(s)	201, 341, 370, 558, 697, 920
Cac8I	GCNNGC	6 cut(s)	171, 475, 618, 1000, 1004, 1039
CciI	TCATGA	1 cut(s)	948
CfoI	GCGC	1 cut(s)	701
Cfr13I	GGNCC	2 cut(s)	57, 755
CseI	GACGC	1 cut(s)	890
Csp6I	GTAC	1 cut(s)	266
CspCI	CAANNNNNGTGG	2 cut(s)	590, 625
CviAII	CATG	5 cut(s)	178, 528, 848, 949, 1042
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	2 cut(s)	333, 469
DpnI	GATC	7 cut(s)	363, 417, 465, 585, 710, 720, 953
DpnII	GATC	7 cut(s)	361, 415, 463, 583, 708, 718, 951
Eam1104I	CTCTTC	2 cut(s)	558, 978
EarI	CTCTTC	2 cut(s)	558, 978
Eco24I	GRGCYC	1 cut(s)	618
Eco31I	GGTCTC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	755
Eco57I	CTGAAG	3 cut(s)	104, 582, 1050
Eco88I	CYCGRG	1 cut(s)	155
EcoRI	GAATTC	2 cut(s)	354, 513
EcoRII	CCWGG	2 cut(s)	604, 675
EcoT22I	ATGCAT	2 cut(s)	222, 529
EcoT38I	GRGCYC	1 cut(s)	618
FaeI	CATG	5 cut(s)	181, 531, 851, 952, 1045
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FatI	CATG	5 cut(s)	177, 527, 847, 948, 1041
FauI	CCCGC	1 cut(s)	625
FbaI	TGATCA	2 cut(s)	583, 951
Fnu4HI	GCNGC	4 cut(s)	18, 78, 174, 396
FokI	GGATG	6 cut(s)	177, 267, 413, 1001, 1058, 1070
FriOI	GRGCYC	1 cut(s)	618
Fsp4HI	GCNGC	4 cut(s)	18, 78, 174, 396
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	700
GluI	GCNGC	4 cut(s)	18, 78, 174, 396
GsaI	CCCAGC	1 cut(s)	931
GsuI	CTGGAG	3 cut(s)	89, 828, 906
HaeIII	GGCC	1 cut(s)	59
HgaI	GACGC	1 cut(s)	890
HhaI	GCGC	1 cut(s)	701
Hin1II	CATG	5 cut(s)	181, 531, 851, 952, 1045
Hin6I	GCGC	1 cut(s)	699
HinP1I	GCGC	1 cut(s)	699
HinfI	GANTC	4 cut(s)	125, 181, 231, 978
HphI	GGTGA	3 cut(s)	221, 766, 842
Hpy166II	GTNNAC	4 cut(s)	266, 339, 544, 814
Hpy188I	TCNGA	4 cut(s)	285, 415, 718, 880
Hpy188III	TCNNGA	4 cut(s)	122, 359, 807, 949
Hpy8I	GTNNAC	4 cut(s)	266, 339, 544, 814
HpyAV	CCTTC	2 cut(s)	781, 1017
HpyCH4III	ACNGT	6 cut(s)	205, 374, 551, 692, 728, 778
HpyCH4V	TGCA	9 cut(s)	77, 220, 317, 339, 426, 527, 639, 794, 1037
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 395, 404
HpyF3I	CTNAG	2 cut(s)	333, 469
Hsp92II	CATG	5 cut(s)	181, 531, 851, 952, 1045
HspAI	GCGC	1 cut(s)	699
Ksp22I	TGATCA	2 cut(s)	583, 951
Kzo9I	GATC	7 cut(s)	361, 415, 463, 583, 708, 718, 951
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	3 cut(s)	89, 160, 382
LweI	GCATC	5 cut(s)	229, 304, 435, 823, 1036
MaeI	CTAG	1 cut(s)	359
MaeIII	GTNAC	6 cut(s)	368, 533, 556, 569, 686, 941
MalI	GATC	7 cut(s)	363, 417, 465, 585, 710, 720, 953
MboI	GATC	7 cut(s)	361, 415, 463, 583, 708, 718, 951
MboII	GAAGA	5 cut(s)	16, 110, 215, 575, 995
MflI	RGATCY	1 cut(s)	708
MhlI	GDGCHC	3 cut(s)	341, 618, 875
MluCI	AATT	8 cut(s)	196, 254, 354, 431, 513, 519, 861, 1018
MlyI	GAGTC	3 cut(s)	134, 190, 240
Mph1103I	ATGCAT	2 cut(s)	222, 529
MseI	TTAA	4 cut(s)	135, 459, 825, 855
MslI	CAYNNNNRTG	2 cut(s)	549, 634
MspR9I	CCNGG	2 cut(s)	606, 677
MvaI	CCWGG	2 cut(s)	606, 677
MwoI	GCNNNNNNNGC	3 cut(s)	323, 395, 404
NdeII	GATC	7 cut(s)	361, 415, 463, 583, 708, 718, 951
NlaIII	CATG	5 cut(s)	181, 531, 851, 952, 1045
NlaIV	GGNNCC	4 cut(s)	58, 662, 674, 710
NmuCI	GTSAC	3 cut(s)	368, 556, 569
NsiI	ATGCAT	2 cut(s)	222, 529
OliI	CACNNNNGTG	2 cut(s)	549, 634
PagI	TCATGA	1 cut(s)	948
PfeI	GAWTC	1 cut(s)	978
PkrI	GCNGC	4 cut(s)	19, 79, 175, 397
PleI	GAGTC	3 cut(s)	133, 189, 239
PpsI	GAGTC	3 cut(s)	133, 189, 239
PsiI	TTATAA	1 cut(s)	1025
Psp6I	CCWGG	2 cut(s)	604, 675
PspFI	CCCAGC	1 cut(s)	927
PspGI	CCWGG	2 cut(s)	604, 675
PspN4I	GGNNCC	4 cut(s)	58, 662, 674, 710
PspPI	GGNCC	2 cut(s)	57, 755
PsuI	RGATCY	1 cut(s)	708
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
RseI	CAYNNNNRTG	2 cut(s)	549, 634
SaqAI	TTAA	4 cut(s)	135, 459, 825, 855
SatI	GCNGC	4 cut(s)	18, 78, 174, 396
Sau3AI	GATC	7 cut(s)	361, 415, 463, 583, 708, 718, 951
Sau96I	GGNCC	2 cut(s)	57, 755
SchI	GAGTC	3 cut(s)	134, 190, 240
ScrFI	CCNGG	2 cut(s)	606, 677
SduI	GDGCHC	3 cut(s)	341, 618, 875
SetI	ASST	8 cut(s)	27, 105, 175, 832, 847, 861, 929, 1035
SfaNI	GCATC	5 cut(s)	229, 304, 435, 823, 1036
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	2 cut(s)	549, 634
Sse9I	AATT	8 cut(s)	196, 254, 354, 431, 513, 519, 861, 1018
SsiI	CCGC	4 cut(s)	17, 86, 618, 722
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	604, 675
TaaI	ACNGT	6 cut(s)	205, 374, 551, 692, 728, 778
TaqI	TCGA	2 cut(s)	981, 1013
TasI	AATT	8 cut(s)	196, 254, 354, 431, 513, 519, 861, 1018
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	978
Tru1I	TTAA	4 cut(s)	135, 459, 825, 855
Tru9I	TTAA	4 cut(s)	135, 459, 825, 855
TscAI	CASTG	6 cut(s)	208, 341, 377, 565, 697, 920
TseFI	GTSAC	3 cut(s)	368, 556, 569
TseI	GCWGC	3 cut(s)	77, 173, 395
Tsp45I	GTSAC	3 cut(s)	368, 556, 569
TspDTI	ATGAA	4 cut(s)	17, 162, 937, 999
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	6 cut(s)	208, 341, 377, 565, 697, 920
VneI	GTGCAC	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	3 cut(s)	354, 513, 1018
XbaI	TCTAGA	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XspI	CTAG	1 cut(s)	359
Zsp2I	ATGCAT	2 cut(s)	222, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.