Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Reverse (-)

30292834 .. 30296021

Gene Structure 3188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG301500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGACGACGACGGCGAAGCTCTCTTTTGTGGCTCTGCTCCTACTTTTAGGGGCCGTTTCGCAGTTTGTTGCAGCAAAACCGCTTTCCCAGAGTAAGCTCCAGTCTCCTGTTCTTCAGGAGTCAATCATTAAGGAGATAAATGAAAACCCCAACGCAGGATGGCAAGCTGCCATGAGTCCTCGCCTCTCCAATTACACTGTTGGTGAGTTTATGCATCTTCTGGGAGTCAAACCAATACCCAAAAAGGAATTGTTGGGTGTACCCATAGTAAGTCATCCGAAATCTTTGAAGTTGCCAAATAGTTTTGATGCAAGGGAGGCTTGGTCTCAGTGCACCACCATTGGACGAATTCTAGATCAGGGTCACTGTGGCTCTTGTTGGGCTTTTGCTGCTGTTGAAGCACTATCAGATCGTTTCTGCATCCAATTTGGCAAGAACACATCTCTGTCTGTTAATGATCTCTTAGCGTGCTGTGGTTTTATGTGTGGAAATGGTTGTGATGGTGGAATTCCAATTTATGCATGGCGTTACTTTGTCCACCACGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATCAAACTGGCTGTTCCCACCCTGGTTGTGAGCCCGCATATCCTACACCAAAGTGCATTAGAAAGTGTGTAGATGGGAACCAGATGTGGAAACAGGCAAAGCGTTACAGTGTCAGCGCATATAGGATCCACTCTGATCCACACAGTATTATGGCGGAAGTCTATAAGAACGGACCAGTTGAAGTTGCCTTCACCGTTTATGAGGATTTTGCATACTATAAATCTGGAGTTTACAAGCATATTAAAGGTGATGCTCTGGGAGGTCATGCTGTTAAGCTAATTGGGTGGGGCACATCTGACGCTGGAGAGGACTATTGGCTTATCGCAAATCAGTGGAATAGAAGCTGGGGAGATGATGGTTACTTCATGATCAAAAGAGGAACAAATGAGTGTGGAATCGAAGAGGATGTGGTTGCTGGCTTGCCTTCATCGAAAAATTTTATAAGCGAGGTTGCAAGCATGGATGCTTTTGGGGATGTTGCTTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

355

Amino Acids

38.94

Weight (kDa)

6.06

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Propeptide_C1	PF08127	38 - 78	1.1e-09	Peptidase family C1 propeptide
Peptidase_C1	PF00112	98 - 332	3.1e-68	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1019
AciI	CCGC	3 cut(s)	80, 612, 731
AclWI	GGATC	3 cut(s)	697, 707, 710
AcsI	RAATTY	3 cut(s)	348, 507, 1012
AcuI	CTGAAG	3 cut(s)	98, 576, 1044
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	289, 398, 758
AjnI	CCWGG	1 cut(s)	598
AleI	CACNNNNGTG	2 cut(s)	543, 628
AluBI	AGCT	5 cut(s)	19, 97, 167, 853, 921
AluI	AGCT	5 cut(s)	19, 97, 167, 853, 921
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	2 cut(s)	108, 330
Alw44I	GTGCAC	1 cut(s)	331
AlwI	GGATC	3 cut(s)	697, 707, 710
AoxI	GGCC	1 cut(s)	51
ApaLI	GTGCAC	1 cut(s)	331
ApeKI	GCWGC	3 cut(s)	71, 167, 389
ApoI	RAATTY	3 cut(s)	348, 507, 1012
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	2 cut(s)	51, 749
AsuHPI	GGTGA	3 cut(s)	215, 760, 836
AvaII	GGWCC	1 cut(s)	749
BaeGI	GKGCMC	2 cut(s)	335, 869
BamHI	GGATCC	1 cut(s)	702
BanII	GRGCYC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	3 cut(s)	83, 154, 376
BccI	CCATC	4 cut(s)	153, 494, 644, 926
BceAI	ACGGC	2 cut(s)	27, 38
BciT130I	CCWGG	1 cut(s)	600
BclI	TGATCA	2 cut(s)	577, 945
BcoDI	GTCTC	2 cut(s)	108, 330
BfaI	CTAG	1 cut(s)	353
BisI	GCNGC	3 cut(s)	72, 168, 390
BlsI	GCNGC	3 cut(s)	73, 169, 391
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	1 cut(s)	749
BmgT120I	GGNCC	2 cut(s)	51, 749
BmiI	GGNNCC	3 cut(s)	52, 656, 704
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	5 cut(s)	223, 298, 429, 817, 1030
BpmI	CTGGAG	3 cut(s)	83, 822, 900
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	541, 598
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	3 cut(s)	100, 589, 752
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	541, 598
BseGI	GGATG	6 cut(s)	164, 274, 420, 988, 1045, 1057
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	3 cut(s)	100, 589, 752
BseSI	GKGCMC	2 cut(s)	335, 869
BseXI	GCAGC	3 cut(s)	83, 154, 376
BseYI	CCCAGC	1 cut(s)	921
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	108, 330
BsnI	GGCC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	330
Bsp1286I	GDGCHC	3 cut(s)	335, 612, 869
Bsp143I	GATC	7 cut(s)	355, 409, 457, 577, 702, 712, 945
BspACI	CCGC	3 cut(s)	80, 612, 731
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	340
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	3 cut(s)	52, 656, 704
BspPI	GGATC	3 cut(s)	697, 707, 710
BspTNI	GGTCTC	1 cut(s)	330
BsrI	ACTGG	3 cut(s)	100, 589, 752
BssECI	CCNNGG	2 cut(s)	541, 598
BssMI	GATC	7 cut(s)	355, 409, 457, 577, 702, 712, 945
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	6 cut(s)	199, 368, 545, 686, 722, 772
Bst6I	CTCTTC	2 cut(s)	552, 972
BstC8I	GCNNGC	6 cut(s)	165, 469, 612, 994, 998, 1033
BstDEI	CTNAG	2 cut(s)	327, 463
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	6 cut(s)	164, 274, 420, 988, 1045, 1057
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	7 cut(s)	358, 412, 460, 580, 705, 715, 948
BstMAI	GTCTC	2 cut(s)	108, 330
BstMBI	GATC	7 cut(s)	355, 409, 457, 577, 702, 712, 945
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 389, 398
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	598
BstSLI	GKGCMC	2 cut(s)	335, 869
BstV1I	GCAGC	3 cut(s)	83, 154, 376
BstX2I	RGATCY	1 cut(s)	702
BstYI	RGATCY	1 cut(s)	702
BsuRI	GGCC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	6 cut(s)	164, 274, 420, 988, 1045, 1057
BtsIMutI	CAGTG	6 cut(s)	195, 335, 364, 552, 691, 914
Cac8I	GCNNGC	6 cut(s)	165, 469, 612, 994, 998, 1033
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	1 cut(s)	695
Cfr13I	GGNCC	2 cut(s)	51, 749
CseI	GACGC	1 cut(s)	884
Csp6I	GTAC	1 cut(s)	260
CspCI	CAANNNNNGTGG	2 cut(s)	584, 619
CviAII	CATG	5 cut(s)	172, 522, 842, 943, 1036
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	327, 463
DpnI	GATC	7 cut(s)	357, 411, 459, 579, 704, 714, 947
DpnII	GATC	7 cut(s)	355, 409, 457, 577, 702, 712, 945
Eam1104I	CTCTTC	2 cut(s)	552, 972
EarI	CTCTTC	2 cut(s)	552, 972
EciI	GGCGGA	1 cut(s)	746
Eco24I	GRGCYC	1 cut(s)	612
Eco31I	GGTCTC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	749
Eco57I	CTGAAG	3 cut(s)	98, 576, 1044
EcoRI	GAATTC	2 cut(s)	348, 507
EcoRII	CCWGG	1 cut(s)	598
EcoT22I	ATGCAT	2 cut(s)	216, 523
EcoT38I	GRGCYC	1 cut(s)	612
FaeI	CATG	5 cut(s)	175, 525, 845, 946, 1039
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FatI	CATG	5 cut(s)	171, 521, 841, 942, 1035
FauI	CCCGC	1 cut(s)	619
FbaI	TGATCA	2 cut(s)	577, 945
Fnu4HI	GCNGC	3 cut(s)	72, 168, 390
FokI	GGATG	6 cut(s)	171, 261, 407, 995, 1052, 1064
FriOI	GRGCYC	1 cut(s)	612
Fsp4HI	GCNGC	3 cut(s)	72, 168, 390
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	694
GluI	GCNGC	3 cut(s)	72, 168, 390
GsaI	CCCAGC	1 cut(s)	925
GsuI	CTGGAG	3 cut(s)	83, 822, 900
HaeIII	GGCC	1 cut(s)	53
HgaI	GACGC	1 cut(s)	884
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	5 cut(s)	175, 525, 845, 946, 1039
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HinfI	GANTC	4 cut(s)	119, 175, 225, 972
HphI	GGTGA	3 cut(s)	215, 760, 836
Hpy166II	GTNNAC	4 cut(s)	260, 333, 538, 808
Hpy188I	TCNGA	4 cut(s)	279, 409, 712, 874
Hpy188III	TCNNGA	4 cut(s)	116, 353, 801, 943
Hpy8I	GTNNAC	4 cut(s)	260, 333, 538, 808
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	2 cut(s)	775, 1011
HpyCH4III	ACNGT	6 cut(s)	199, 368, 545, 686, 722, 772
HpyCH4V	TGCA	9 cut(s)	71, 214, 311, 333, 420, 521, 633, 788, 1031
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 389, 398
HpyF3I	CTNAG	2 cut(s)	327, 463
Hsp92II	CATG	5 cut(s)	175, 525, 845, 946, 1039
HspAI	GCGC	1 cut(s)	693
Ksp22I	TGATCA	2 cut(s)	577, 945
Kzo9I	GATC	7 cut(s)	355, 409, 457, 577, 702, 712, 945
LmnI	GCTCC	2 cut(s)	42, 102
Lsp1109I	GCAGC	3 cut(s)	83, 154, 376
LweI	GCATC	5 cut(s)	223, 298, 429, 817, 1030
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	6 cut(s)	362, 527, 550, 563, 680, 935
MalI	GATC	7 cut(s)	357, 411, 459, 579, 704, 714, 947
MboI	GATC	7 cut(s)	355, 409, 457, 577, 702, 712, 945
MboII	GAAGA	4 cut(s)	104, 209, 569, 989
MflI	RGATCY	1 cut(s)	702
MhlI	GDGCHC	3 cut(s)	335, 612, 869
MluCI	AATT	8 cut(s)	190, 248, 348, 425, 507, 513, 855, 1012
MlyI	GAGTC	3 cut(s)	128, 184, 234
MnlI	CCTC	9 cut(s)	189, 194, 310, 772, 830, 877, 947, 973, 1018
Mph1103I	ATGCAT	2 cut(s)	216, 523
MseI	TTAA	4 cut(s)	129, 453, 819, 849
MslI	CAYNNNNRTG	2 cut(s)	543, 628
MspR9I	CCNGG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	3 cut(s)	317, 389, 398
NdeII	GATC	7 cut(s)	355, 409, 457, 577, 702, 712, 945
NlaIII	CATG	5 cut(s)	175, 525, 845, 946, 1039
NlaIV	GGNNCC	3 cut(s)	52, 656, 704
NmuCI	GTSAC	3 cut(s)	362, 550, 563
NsiI	ATGCAT	2 cut(s)	216, 523
OliI	CACNNNNGTG	2 cut(s)	543, 628
PagI	TCATGA	1 cut(s)	942
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	972
PkrI	GCNGC	3 cut(s)	73, 169, 391
PleI	GAGTC	3 cut(s)	127, 183, 233
PpsI	GAGTC	3 cut(s)	127, 183, 233
PsiI	TTATAA	1 cut(s)	1019
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	921
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	3 cut(s)	52, 656, 704
PspPI	GGNCC	2 cut(s)	51, 749
PsuI	RGATCY	1 cut(s)	702
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	2 cut(s)	543, 628
SaqAI	TTAA	4 cut(s)	129, 453, 819, 849
SatI	GCNGC	3 cut(s)	72, 168, 390
Sau3AI	GATC	7 cut(s)	355, 409, 457, 577, 702, 712, 945
Sau96I	GGNCC	2 cut(s)	51, 749
SchI	GAGTC	3 cut(s)	128, 184, 234
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	3 cut(s)	335, 612, 869
SetI	ASST	8 cut(s)	21, 99, 169, 826, 841, 855, 923, 1029
SfaNI	GCATC	5 cut(s)	223, 298, 429, 817, 1030
SinI	GGWCC	1 cut(s)	749
SmiMI	CAYNNNNRTG	2 cut(s)	543, 628
Sse9I	AATT	8 cut(s)	190, 248, 348, 425, 507, 513, 855, 1012
SsiI	CCGC	3 cut(s)	80, 612, 731
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	598
TaaI	ACNGT	6 cut(s)	199, 368, 545, 686, 722, 772
TaqI	TCGA	2 cut(s)	975, 1007
TasI	AATT	8 cut(s)	190, 248, 348, 425, 507, 513, 855, 1012
TfiI	GAWTC	1 cut(s)	972
Tru1I	TTAA	4 cut(s)	129, 453, 819, 849
Tru9I	TTAA	4 cut(s)	129, 453, 819, 849
TscAI	CASTG	6 cut(s)	202, 335, 371, 559, 691, 914
TseFI	GTSAC	3 cut(s)	362, 550, 563
TseI	GCWGC	3 cut(s)	71, 167, 389
Tsp45I	GTSAC	3 cut(s)	362, 550, 563
TspDTI	ATGAA	3 cut(s)	156, 931, 993
TspGWI	ACGGA	1 cut(s)	762
TspRI	CASTG	6 cut(s)	202, 335, 371, 559, 691, 914
VneI	GTGCAC	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	749
XapI	RAATTY	3 cut(s)	348, 507, 1012
XbaI	TCTAGA	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	519
XspI	CTAG	1 cut(s)	353
Zsp2I	ATGCAT	2 cut(s)	216, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.