Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Reverse (-)

30726239 .. 30729404

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG295600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCGGCGAAGCTCTCTTTTCTGCCTCTGCTCTTACTTTTTGGGGCCGTTTCGCAGTTTGTTGCAGCAAAACCGCTCTCCCAGAGTAAGCTCCAGTCTCCTGTTCTTCAGGAGTCAATCATTAAGGAGATAAATGAAAACCCCGAGGCAGGATGGCAAGCTGCCATGAGTCCTCGCCTCTCCAATTACACTGTTGGTGAGTTTATGCATCTTCTGGGAGTCAAACCAATACCCAAAAAGGAATTGTTGGGTGTACCCATAGTACGTCATCCGAAATCTTTGAAGTTGCCAAATAGTTTTGATGCAAGGGAGGCTTGGTCTCAGTGCACCACCATTGGACGAATTCTAGATCAGGGTCACTGTGGCTCTTGTTGGGCTTTTGCTGCTGTTGAAGCACTATCAGATCGTTTCTGCATCCAATTTGGCAAGAACACATCTCTGTCTGTTAATGATCTCTTAGCATGCTGTGGTTTTATGTGTGGAAATGGTTGTGATGGTGGAATTCCAATTTATGCATGGCGTTACTTTGTCCACCACGGTGTTGTCACTGAAGAGTGTGATCCATACTTTGATCAAACTGGCTGTTCCCACCCTGGTTGTGAGCCTGCATATCCTACACCAAAGTGCATTAGAAAGTGTGTAGATGGGAACCAGATGTGGAACCGGGCAAAGCGTTACAGTGTCAGCGCATATAGGATCCATTCTGATCCACACAGTATTATGGCAGAAGTCTATAAGAACGGACCAGTTGAAGTTGCCTTCACCGTTTATGAGGATTTTGCATACTATAAATCTGGAGTTTACAAGCATATTAAAGGTGATGCTCTGGGAGGTCATGCTGTTAAGCTAATTGGGTGGGGCACATCTGACGCTGGAGAGGACTATTGGCTTATGGCAAATCAGTGGAATAGAAGCTGGGGAGATGATGGTTACTTCATGATCAAAAGAGGAACAAACGAGTGTGGAATCGAAGAGGATGTGGTTGCTGGCTTGCCTTCATCGAAAAATTTTATAAGCGAGGTTGCAAGCATGGATGCTTTCGGGGATGTTGCTTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

353

Amino Acids

38.89

Weight (kDa)

6.07

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Propeptide_C1	PF08127	36 - 76	1.2e-08	Peptidase family C1 propeptide
Peptidase_C1	PF00112	96 - 330	1.1e-67	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1013
AccBSI	CCGCTC	1 cut(s)	76
AciI	CCGC	2 cut(s)	5, 74
AclWI	GGATC	4 cut(s)	554, 691, 701, 704
AcsI	RAATTY	3 cut(s)	342, 501, 1006
AcuI	CTGAAG	3 cut(s)	92, 570, 1038
AfaI	GTAC	2 cut(s)	255, 264
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	283, 392, 752
AjnI	CCWGG	1 cut(s)	592
AleI	CACNNNNGTG	2 cut(s)	537, 622
AluBI	AGCT	5 cut(s)	13, 91, 161, 847, 915
AluI	AGCT	5 cut(s)	13, 91, 161, 847, 915
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	102, 324
Alw44I	GTGCAC	1 cut(s)	325
AlwI	GGATC	4 cut(s)	554, 691, 701, 704
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	45
ApaLI	GTGCAC	1 cut(s)	325
ApeKI	GCWGC	3 cut(s)	65, 161, 383
ApoI	RAATTY	3 cut(s)	342, 501, 1006
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	45, 743
AsuC2I	CCSGG	1 cut(s)	665
AsuHPI	GGTGA	3 cut(s)	209, 754, 830
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	743
BaeGI	GKGCMC	2 cut(s)	329, 863
BamHI	GGATCC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	3 cut(s)	77, 148, 370
BccI	CCATC	4 cut(s)	147, 488, 638, 920
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	594
BclI	TGATCA	2 cut(s)	571, 939
BcnI	CCSGG	1 cut(s)	665
BcoDI	GTCTC	2 cut(s)	102, 324
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	4 cut(s)	6, 66, 162, 384
BlsI	GCNGC	4 cut(s)	7, 67, 163, 385
Bme1390I	CCNGG	2 cut(s)	594, 665
Bme18I	GGWCC	1 cut(s)	743
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	45, 743
BmiI	GGNNCC	4 cut(s)	46, 650, 662, 698
BmrFI	CCNGG	2 cut(s)	594, 665
BmsI	GCATC	5 cut(s)	217, 292, 423, 811, 1024
BpmI	CTGGAG	3 cut(s)	77, 816, 894
BpuMI	CCSGG	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	144, 535, 592
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	3 cut(s)	94, 583, 746
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	3 cut(s)	144, 535, 592
BseGI	GGATG	6 cut(s)	158, 268, 414, 982, 1039, 1051
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	3 cut(s)	94, 583, 746
BseSI	GKGCMC	2 cut(s)	329, 863
BseXI	GCAGC	3 cut(s)	77, 148, 370
BseYI	CCCAGC	1 cut(s)	915
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	102, 324
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	329, 863
Bsp143I	GATC	8 cut(s)	349, 403, 451, 559, 571, 696, 706, 939
BspACI	CCGC	2 cut(s)	5, 74
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	936
BspLI	GGNNCC	4 cut(s)	46, 650, 662, 698
BspPI	GGATC	4 cut(s)	554, 691, 701, 704
BspTNI	GGTCTC	1 cut(s)	324
BsrBI	CCGCTC	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	94, 583, 746
BssECI	CCNNGG	3 cut(s)	144, 535, 592
BssMI	GATC	8 cut(s)	349, 403, 451, 559, 571, 696, 706, 939
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	6 cut(s)	193, 362, 539, 680, 716, 766
Bst6I	CTCTTC	2 cut(s)	546, 966
BstC8I	GCNNGC	6 cut(s)	159, 463, 606, 988, 992, 1027
BstDEI	CTNAG	2 cut(s)	321, 457
BstDSI	CCRYGG	1 cut(s)	535
BstF5I	GGATG	6 cut(s)	158, 268, 414, 982, 1039, 1051
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	8 cut(s)	352, 406, 454, 562, 574, 699, 709, 942
BstMAI	GTCTC	2 cut(s)	102, 324
BstMBI	GATC	8 cut(s)	349, 403, 451, 559, 571, 696, 706, 939
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 383, 392
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	1 cut(s)	465
BstSCI	CCNGG	2 cut(s)	592, 663
BstSLI	GKGCMC	2 cut(s)	329, 863
BstV1I	GCAGC	3 cut(s)	77, 148, 370
BstX2I	RGATCY	1 cut(s)	696
BstYI	RGATCY	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	535
BtsCI	GGATG	6 cut(s)	158, 268, 414, 982, 1039, 1051
BtsIMutI	CAGTG	6 cut(s)	189, 329, 358, 546, 685, 908
Cac8I	GCNNGC	6 cut(s)	159, 463, 606, 988, 992, 1027
CciI	TCATGA	1 cut(s)	936
CfoI	GCGC	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	45, 743
CseI	GACGC	1 cut(s)	878
Csp6I	GTAC	2 cut(s)	254, 263
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	6 cut(s)	166, 462, 516, 836, 937, 1030
CviQI	GTAC	2 cut(s)	254, 263
DdeI	CTNAG	2 cut(s)	321, 457
DpnI	GATC	8 cut(s)	351, 405, 453, 561, 573, 698, 708, 941
DpnII	GATC	8 cut(s)	349, 403, 451, 559, 571, 696, 706, 939
Eam1104I	CTCTTC	2 cut(s)	546, 966
EarI	CTCTTC	2 cut(s)	546, 966
Eco31I	GGTCTC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	743
Eco57I	CTGAAG	3 cut(s)	92, 570, 1038
Eco88I	CYCGRG	1 cut(s)	143
EcoRI	GAATTC	2 cut(s)	342, 501
EcoRII	CCWGG	1 cut(s)	592
EcoT22I	ATGCAT	2 cut(s)	210, 517
FaeI	CATG	6 cut(s)	169, 465, 519, 839, 940, 1033
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FatI	CATG	6 cut(s)	165, 461, 515, 835, 936, 1029
FbaI	TGATCA	2 cut(s)	571, 939
Fnu4HI	GCNGC	4 cut(s)	6, 66, 162, 384
FokI	GGATG	6 cut(s)	165, 255, 401, 989, 1046, 1058
Fsp4HI	GCNGC	4 cut(s)	6, 66, 162, 384
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	4 cut(s)	6, 66, 162, 384
GsaI	CCCAGC	1 cut(s)	919
GsuI	CTGGAG	3 cut(s)	77, 816, 894
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	664
HgaI	GACGC	1 cut(s)	878
HhaI	GCGC	1 cut(s)	689
Hin1II	CATG	6 cut(s)	169, 465, 519, 839, 940, 1033
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HinfI	GANTC	4 cut(s)	113, 169, 219, 966
HpaII	CCGG	1 cut(s)	664
HphI	GGTGA	3 cut(s)	209, 754, 830
Hpy166II	GTNNAC	4 cut(s)	254, 327, 532, 802
Hpy188I	TCNGA	4 cut(s)	273, 403, 706, 868
Hpy188III	TCNNGA	4 cut(s)	110, 347, 795, 937
Hpy8I	GTNNAC	4 cut(s)	254, 327, 532, 802
HpyAV	CCTTC	2 cut(s)	769, 1005
HpyCH4III	ACNGT	6 cut(s)	193, 362, 539, 680, 716, 766
HpyCH4IV	ACGT	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 383, 392
HpyF3I	CTNAG	2 cut(s)	321, 457
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	6 cut(s)	169, 465, 519, 839, 940, 1033
HspAI	GCGC	1 cut(s)	687
Ksp22I	TGATCA	2 cut(s)	571, 939
Kzo9I	GATC	8 cut(s)	349, 403, 451, 559, 571, 696, 706, 939
LmnI	GCTCC	1 cut(s)	96
Lsp1109I	GCAGC	3 cut(s)	77, 148, 370
LweI	GCATC	5 cut(s)	217, 292, 423, 811, 1024
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	5 cut(s)	356, 521, 544, 674, 929
MalI	GATC	8 cut(s)	351, 405, 453, 561, 573, 698, 708, 941
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	8 cut(s)	349, 403, 451, 559, 571, 696, 706, 939
MboII	GAAGA	4 cut(s)	98, 203, 563, 983
MflI	RGATCY	1 cut(s)	696
MhlI	GDGCHC	2 cut(s)	329, 863
MluCI	AATT	8 cut(s)	184, 242, 342, 419, 501, 507, 849, 1006
MlyI	GAGTC	3 cut(s)	122, 178, 228
Mph1103I	ATGCAT	2 cut(s)	210, 517
MseI	TTAA	4 cut(s)	123, 447, 813, 843
MslI	CAYNNNNRTG	2 cut(s)	537, 622
MspI	CCGG	1 cut(s)	664
MspR9I	CCNGG	2 cut(s)	594, 665
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	3 cut(s)	311, 383, 392
NciI	CCSGG	1 cut(s)	665
NdeII	GATC	8 cut(s)	349, 403, 451, 559, 571, 696, 706, 939
NlaIII	CATG	6 cut(s)	169, 465, 519, 839, 940, 1033
NlaIV	GGNNCC	4 cut(s)	46, 650, 662, 698
NmuCI	GTSAC	2 cut(s)	356, 544
NsiI	ATGCAT	2 cut(s)	210, 517
NspI	RCATGY	1 cut(s)	465
OliI	CACNNNNGTG	2 cut(s)	537, 622
PaeI	GCATGC	1 cut(s)	465
PagI	TCATGA	1 cut(s)	936
PfeI	GAWTC	1 cut(s)	966
PkrI	GCNGC	4 cut(s)	7, 67, 163, 385
PleI	GAGTC	3 cut(s)	121, 177, 227
PpsI	GAGTC	3 cut(s)	121, 177, 227
PsiI	TTATAA	1 cut(s)	1013
Psp6I	CCWGG	1 cut(s)	592
PspFI	CCCAGC	1 cut(s)	915
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	4 cut(s)	46, 650, 662, 698
PspPI	GGNCC	2 cut(s)	45, 743
PsuI	RGATCY	1 cut(s)	696
RsaI	GTAC	2 cut(s)	255, 264
RsaNI	GTAC	2 cut(s)	254, 263
RseI	CAYNNNNRTG	2 cut(s)	537, 622
SaqAI	TTAA	4 cut(s)	123, 447, 813, 843
SatI	GCNGC	4 cut(s)	6, 66, 162, 384
Sau3AI	GATC	8 cut(s)	349, 403, 451, 559, 571, 696, 706, 939
Sau96I	GGNCC	2 cut(s)	45, 743
SchI	GAGTC	3 cut(s)	122, 178, 228
ScrFI	CCNGG	2 cut(s)	594, 665
SduI	GDGCHC	2 cut(s)	329, 863
SetI	ASST	9 cut(s)	15, 93, 163, 268, 820, 835, 849, 917, 1023
SfaNI	GCATC	5 cut(s)	217, 292, 423, 811, 1024
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	2 cut(s)	537, 622
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	8 cut(s)	184, 242, 342, 419, 501, 507, 849, 1006
SsiI	CCGC	2 cut(s)	5, 74
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	592, 663
TaaI	ACNGT	6 cut(s)	193, 362, 539, 680, 716, 766
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	969, 1001
TasI	AATT	8 cut(s)	184, 242, 342, 419, 501, 507, 849, 1006
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	966
Tru1I	TTAA	4 cut(s)	123, 447, 813, 843
Tru9I	TTAA	4 cut(s)	123, 447, 813, 843
TscAI	CASTG	6 cut(s)	196, 329, 365, 553, 685, 908
TseFI	GTSAC	2 cut(s)	356, 544
TseI	GCWGC	3 cut(s)	65, 161, 383
Tsp45I	GTSAC	2 cut(s)	356, 544
TspDTI	ATGAA	3 cut(s)	150, 925, 987
TspGWI	ACGGA	1 cut(s)	756
TspRI	CASTG	6 cut(s)	196, 329, 365, 553, 685, 908
VneI	GTGCAC	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	3 cut(s)	342, 501, 1006
XbaI	TCTAGA	1 cut(s)	346
XceI	RCATGY	1 cut(s)	465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	513
XspI	CTAG	1 cut(s)	347
Zsp2I	ATGCAT	2 cut(s)	210, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.