Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Reverse (-)

17807939 .. 17811663

Gene Structure 3725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACGGCGAAGCTCTCGTTTCTGGCTCTCTTCTTACTTGTAGGTGCCGTTTCGCAGTTTGTTGCAGCAAAACCACTTTCCCAGAGTAAGCTCCAGTCTCCTCTTCTTCAGGAGTCAATCATTAAGGAGATAAATGAAAACCCTGAGGCGGGATGGCAAGCTGCTATGAGTCCTCGCTTCTCCAACTACACTGTTGGTGATTTTATGCACATTCTGGGAGTCAAACAAATACCTAAAAAGGAGTTGCTAGGTGTACCCGTTGTAAGTCATCCAAAAACTTTGAAGTTGCCAAATAGTTTTGATGCAAGAGAGGCTTGGTCTCAGTGTAACACCATTGGAAGAATTCTAGATCAGGGTCACTGTGGCTCTTGCTGGGCTTTTGCTGCTGTTGAAGCACTATCAGATCGTTTCTGCATCCAATTTGGGAAGAACACATCTCTGTCGGTTAATGATCTCTTAGCATGCTGTGGTTTTATGTGTGGAAATGGTTGTGATGGTGGAATTCCAATTTATGCATGGCGTTACTTTGTCCACCACGGTGTTGTCACTGAAAAGTGTGACCCATACTTTGATCAAACTGGCTGTTCCCACCCTGGTTGTGAGCCTGCATATCCTACACCAAAGTGCGTTAGGAAGTGTGTAGATGGGAACCAGATGTGGAAGCAGTCAAAGCGTTACAGTGTCAGCGCATATAGGATCAATTCTGATCCACACAGTATTATGGCAGAAGTCTATAAGAACGGACCAGTTGAAGTTGCCTTCACCGTTTATGAGGATTTTGCATACTATAAATCTGGAGTTTACAAGCATATTAAAGGTGATGTTCTGGGAGGTCATGCTGTTAAGCTAATTGGGTGGGGCACATCCAGCGCTGGGGATGACTATTGGCTTCTTGCAAATCAGTGGAATAGAAGCTGGGGAGATGATGGTTACTTCATGATCAAAAGAGGAACAAACGAGTGTGGAATCGAAGAAGACGTGGTTGCTGGTTTGCCTTCATCTAAAAATGTTATGAGCGAAGTCTCAAGCATGGGTGCTTTTGGGGATTTTGCTTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

354

Amino Acids

38.82

Weight (kDa)

6.5

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Propeptide_C1	PF08127	36 - 76	4e-09	Peptidase family C1 propeptide
Peptidase_C1	PF00112	96 - 330	2.1e-67	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	2 cut(s)	701, 704
AcsI	RAATTY	2 cut(s)	342, 501
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	255
AfeI	AGCGCT	1 cut(s)	871
AfiI	CCNNNNNNNGG	3 cut(s)	148, 149, 873
AgsI	TTSAA	4 cut(s)	283, 392, 752, 1056
AjiI	CACGTC	1 cut(s)	979
AjnI	CCWGG	1 cut(s)	592
AleI	CACNNNNGTG	2 cut(s)	537, 622
AluBI	AGCT	5 cut(s)	13, 91, 161, 847, 915
AluI	AGCT	5 cut(s)	13, 91, 161, 847, 915
Alw26I	GTCTC	3 cut(s)	102, 324, 1027
AlwI	GGATC	2 cut(s)	701, 704
Aor51HI	AGCGCT	1 cut(s)	871
ApeKI	GCWGC	3 cut(s)	65, 161, 383
ApoI	RAATTY	2 cut(s)	342, 501
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AspLEI	GCGC	2 cut(s)	689, 872
AspS9I	GGNCC	1 cut(s)	743
AsuHPI	GGTGA	3 cut(s)	209, 754, 830
AvaII	GGWCC	1 cut(s)	743
AxyI	CCTNAGG	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	863
BanI	GGYRCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	981
BbvI	GCAGC	3 cut(s)	77, 148, 370
BccI	CCATC	4 cut(s)	147, 488, 638, 920
BceAI	ACGGC	2 cut(s)	21, 32
BciT130I	CCWGG	1 cut(s)	594
BclI	TGATCA	2 cut(s)	571, 939
BcoDI	GTCTC	3 cut(s)	102, 324, 1027
BfaI	CTAG	2 cut(s)	248, 347
BfoI	RGCGCY	1 cut(s)	873
BisI	GCNGC	3 cut(s)	66, 162, 384
BlsI	GCNGC	3 cut(s)	67, 163, 385
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	1 cut(s)	743
BmgBI	CACGTC	1 cut(s)	979
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	2 cut(s)	46, 650
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	2 cut(s)	292, 423
BpiI	GAAGAC	1 cut(s)	981
BpmI	CTGGAG	2 cut(s)	77, 816
BpuEI	CTTGAG	1 cut(s)	1009
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	535, 592
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 149, 873
Bse1I	ACTGG	3 cut(s)	94, 583, 746
Bse21I	CCTNAGG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	2 cut(s)	535, 592
BseGI	GGATG	5 cut(s)	158, 268, 414, 863, 883
BseLI	CCNNNNNNNGG	3 cut(s)	148, 149, 873
BseMII	CTCAG	2 cut(s)	135, 335
BseNI	ACTGG	3 cut(s)	94, 583, 746
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	3 cut(s)	77, 148, 370
BseYI	CCCAGC	3 cut(s)	372, 872, 915
BshNI	GGYRCC	1 cut(s)	44
BslI	CCNNNNNNNGG	3 cut(s)	148, 149, 873
BsmAI	GTCTC	3 cut(s)	102, 324, 1027
Bso31I	GGTCTC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp143I	GATC	7 cut(s)	349, 403, 451, 571, 696, 706, 939
BspACI	CCGC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	136, 334
BspHI	TCATGA	1 cut(s)	936
BspLI	GGNNCC	2 cut(s)	46, 650
BspPI	GGATC	2 cut(s)	701, 704
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	324
BsrI	ACTGG	3 cut(s)	94, 583, 746
BssECI	CCNNGG	2 cut(s)	535, 592
BssMI	GATC	7 cut(s)	349, 403, 451, 571, 696, 706, 939
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	6 cut(s)	193, 362, 539, 680, 716, 766
Bst6I	CTCTTC	2 cut(s)	35, 108
BstC8I	GCNNGC	3 cut(s)	159, 463, 606
BstDEI	CTNAG	3 cut(s)	144, 321, 457
BstDSI	CCRYGG	1 cut(s)	535
BstF5I	GGATG	5 cut(s)	158, 268, 414, 863, 883
BstH2I	RGCGCY	1 cut(s)	873
BstHHI	GCGC	2 cut(s)	689, 872
BstKTI	GATC	7 cut(s)	352, 406, 454, 574, 699, 709, 942
BstMAI	GTCTC	3 cut(s)	102, 324, 1027
BstMBI	GATC	7 cut(s)	349, 403, 451, 571, 696, 706, 939
BstMWI	GCNNNNNNNGC	5 cut(s)	311, 383, 392, 670, 867
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	592
BstSLI	GKGCMC	1 cut(s)	863
BstV1I	GCAGC	3 cut(s)	77, 148, 370
BstV2I	GAAGAC	1 cut(s)	981
Bsu36I	CCTNAGG	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	535
BtrI	CACGTC	1 cut(s)	979
BtsCI	GGATG	5 cut(s)	158, 268, 414, 863, 883
BtsIMutI	CAGTG	6 cut(s)	189, 329, 358, 546, 685, 908
Cac8I	GCNNGC	3 cut(s)	159, 463, 606
CciI	TCATGA	1 cut(s)	936
CfoI	GCGC	2 cut(s)	689, 872
Cfr13I	GGNCC	1 cut(s)	743
Csp6I	GTAC	1 cut(s)	254
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	5 cut(s)	462, 516, 836, 937, 1030
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	3 cut(s)	144, 321, 457
DpnI	GATC	7 cut(s)	351, 405, 453, 573, 698, 708, 941
DpnII	GATC	7 cut(s)	349, 403, 451, 571, 696, 706, 939
Eam1104I	CTCTTC	2 cut(s)	35, 108
EarI	CTCTTC	2 cut(s)	35, 108
Eco31I	GGTCTC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	743
Eco47III	AGCGCT	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	92
Eco81I	CCTNAGG	1 cut(s)	144
EcoRI	GAATTC	2 cut(s)	342, 501
EcoRII	CCWGG	1 cut(s)	592
EcoT22I	ATGCAT	1 cut(s)	517
FaeI	CATG	5 cut(s)	465, 519, 839, 940, 1033
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FatI	CATG	5 cut(s)	461, 515, 835, 936, 1029
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	2 cut(s)	571, 939
Fnu4HI	GCNGC	3 cut(s)	66, 162, 384
FokI	GGATG	5 cut(s)	165, 255, 401, 850, 890
Fsp4HI	GCNGC	3 cut(s)	66, 162, 384
FspBI	CTAG	2 cut(s)	248, 347
GlaI	GCGC	2 cut(s)	688, 871
GluI	GCNGC	3 cut(s)	66, 162, 384
GsaI	CCCAGC	3 cut(s)	376, 876, 919
GsuI	CTGGAG	2 cut(s)	77, 816
HaeII	RGCGCY	1 cut(s)	873
HhaI	GCGC	2 cut(s)	689, 872
Hin1II	CATG	5 cut(s)	465, 519, 839, 940, 1033
Hin6I	GCGC	2 cut(s)	687, 870
HinP1I	GCGC	2 cut(s)	687, 870
HinfI	GANTC	4 cut(s)	113, 169, 219, 966
HphI	GGTGA	3 cut(s)	209, 754, 830
Hpy166II	GTNNAC	3 cut(s)	254, 532, 802
Hpy188I	TCNGA	2 cut(s)	403, 706
Hpy188III	TCNNGA	4 cut(s)	110, 347, 795, 937
Hpy8I	GTNNAC	3 cut(s)	254, 532, 802
HpyAV	CCTTC	2 cut(s)	769, 1005
HpyCH4III	ACNGT	6 cut(s)	193, 362, 539, 680, 716, 766
HpyCH4IV	ACGT	1 cut(s)	978
HpyCH4V	TGCA	8 cut(s)	65, 208, 305, 414, 515, 608, 782, 896
HpyF10VI	GCNNNNNNNGC	5 cut(s)	311, 383, 392, 670, 867
HpyF3I	CTNAG	3 cut(s)	144, 321, 457
HpySE526I	ACGT	1 cut(s)	978
Hsp92II	CATG	5 cut(s)	465, 519, 839, 940, 1033
HspAI	GCGC	2 cut(s)	687, 870
Ksp22I	TGATCA	2 cut(s)	571, 939
Kzo9I	GATC	7 cut(s)	349, 403, 451, 571, 696, 706, 939
LmnI	GCTCC	1 cut(s)	96
Lsp1109I	GCAGC	3 cut(s)	77, 148, 370
LweI	GCATC	2 cut(s)	292, 423
MaeI	CTAG	2 cut(s)	248, 347
MaeII	ACGT	1 cut(s)	978
MaeIII	GTNAC	7 cut(s)	326, 356, 521, 544, 557, 674, 929
MalI	GATC	7 cut(s)	351, 405, 453, 573, 698, 708, 941
MboI	GATC	7 cut(s)	349, 403, 451, 571, 696, 706, 939
MboII	GAAGA	7 cut(s)	22, 95, 98, 351, 439, 983, 986
MhlI	GDGCHC	1 cut(s)	863
MluCI	AATT	7 cut(s)	342, 419, 501, 507, 700, 849, 1056
MlyI	GAGTC	3 cut(s)	122, 178, 228
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	7 cut(s)	111, 139, 183, 304, 766, 824, 941
Mph1103I	ATGCAT	1 cut(s)	517
MseI	TTAA	4 cut(s)	123, 447, 813, 843
MslI	CAYNNNNRTG	2 cut(s)	537, 622
MspR9I	CCNGG	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	5 cut(s)	311, 383, 392, 670, 867
NdeII	GATC	7 cut(s)	349, 403, 451, 571, 696, 706, 939
NlaIII	CATG	5 cut(s)	465, 519, 839, 940, 1033
NlaIV	GGNNCC	2 cut(s)	46, 650
NmuCI	GTSAC	3 cut(s)	356, 544, 557
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	1 cut(s)	465
OliI	CACNNNNGTG	2 cut(s)	537, 622
PaeI	GCATGC	1 cut(s)	465
PagI	TCATGA	1 cut(s)	936
PcsI	WCGNNNNNNNCGW	1 cut(s)	975
PfeI	GAWTC	1 cut(s)	966
PkrI	GCNGC	3 cut(s)	67, 163, 385
PleI	GAGTC	3 cut(s)	121, 177, 227
PpsI	GAGTC	3 cut(s)	121, 177, 227
Psp6I	CCWGG	1 cut(s)	592
PspFI	CCCAGC	3 cut(s)	372, 872, 915
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	46, 650
PspPI	GGNCC	1 cut(s)	743
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
RseI	CAYNNNNRTG	2 cut(s)	537, 622
SaqAI	TTAA	4 cut(s)	123, 447, 813, 843
SatI	GCNGC	3 cut(s)	66, 162, 384
Sau3AI	GATC	7 cut(s)	349, 403, 451, 571, 696, 706, 939
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	3 cut(s)	122, 178, 228
ScrFI	CCNGG	1 cut(s)	594
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	2 cut(s)	292, 423
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	2 cut(s)	537, 622
SmlI	CTYRAG	1 cut(s)	1024
SmoI	CTYRAG	1 cut(s)	1024
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	7 cut(s)	342, 419, 501, 507, 700, 849, 1056
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	2 cut(s)	248, 347
StyD4I	CCNGG	1 cut(s)	592
TaaI	ACNGT	6 cut(s)	193, 362, 539, 680, 716, 766
TaiI	ACGT	1 cut(s)	981
TaqI	TCGA	1 cut(s)	969
TasI	AATT	7 cut(s)	342, 419, 501, 507, 700, 849, 1056
TfiI	GAWTC	1 cut(s)	966
Tru1I	TTAA	4 cut(s)	123, 447, 813, 843
Tru9I	TTAA	4 cut(s)	123, 447, 813, 843
TscAI	CASTG	6 cut(s)	196, 329, 365, 553, 685, 908
TseFI	GTSAC	3 cut(s)	356, 544, 557
TseI	GCWGC	3 cut(s)	65, 161, 383
Tsp45I	GTSAC	3 cut(s)	356, 544, 557
TspDTI	ATGAA	3 cut(s)	150, 925, 987
TspGWI	ACGGA	1 cut(s)	756
TspRI	CASTG	6 cut(s)	196, 329, 365, 553, 685, 908
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	2 cut(s)	342, 501
XbaI	TCTAGA	1 cut(s)	346
XceI	RCATGY	1 cut(s)	465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	513
XspI	CTAG	2 cut(s)	248, 347
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.