Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Forward (+)

34475601 .. 34480181

Gene Structure 4581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1285700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTACCATAAGAATTCCGCAGGTGTATTTTGCTGCTGCGACTTGTCTGTTACTTTTAGGGGCCATCTCCAGCTTTCAACCACAGTTGATTGCAGCCAAACCACTTTCCAAGACTAAGCTTCAATCTCCTATTCTTCAGGACTCGATCATTAAACAGATAAATGAAAACCCCAAGGCTGGATGGGAAGCTGCCATGAATCCTCGATTCTCCAATTACACTGTTAGCCAGTTTATGCACCTCCTGGGAGTCAAACCAACACCCCAAAAGGACTTGCAGAGTTTTCCTATCAAAACTTATCCAAAATCTCTCAAGTTGCCAAATAATTTTGATGCCAGAACCGCTTGGCCTCAGTGTAACACCATTGGAAGAATATTAGGTCAGTTGGGTCACTGTGGCTCTTGTTGGGCTTTTGCTGCTGTTGAAGCACTATCAGATCGTTTTTGTGTCCATTATGGCATGAATATCTCTCTGTCTGTTAATGATCTCCTAGCGTGTTGTGGTTTCATGTGTGGAGCTGGTTGTAATGGGGGATATCCAATTTATGCTTGGCGGTACTTTATCCACCATGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATTCAACTGGCTGCTCGCACCCTGGTTGTGAGCCTGCTTATCCGACTCCAAAGTGCGTTAAAAAATGTGTAGATGGGAACCAGATCTGGAAGAATTCAAAGCGTTATAGTATCAGTGCGTATAGAATCAACTCTGATCCTCACAGTATCATGGCAGAGGTTTATAGGAATGGACCAGTTGAGGTTGCATTCACTGTTTACGAGGACTTTGCACACTATAAATCAGGAGTTTACAAGCATGTTAAAGGTGATGTATTGGGAGGTCATGCTGTTAAGCTAATTGGATGGGGGACAACCAATGATGGAGAGGACTATTGGCTTCTGGCGAATCAGTGGAATAGAAGCTGGGGTGATGATGGCTACTTCAAGATCAGAAGAGGAACAAACGAGTGTGGAATTGAAGAAGACGTGGTTGCCGGTTTGCCTTCATCCAAAAATTTTATAAGCCAAGTTGCCAGTGTGGATGCTGTTGCGGCTGGTGTGTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

365

Amino Acids

40.11

Weight (kDa)

8.1

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Propeptide_C1	PF08127	46 - 88	1.2e-13	Peptidase family C1 propeptide
Peptidase_C1	PF00112	106 - 341	1.6e-64	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1046
AarI	CACCTGC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	13
AciI	CCGC	4 cut(s)	20, 342, 553, 1076
AclWI	GGATC	1 cut(s)	734
AcsI	RAATTY	3 cut(s)	15, 697, 1039
AcuI	CTGAAG	2 cut(s)	122, 603
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	7 cut(s)	80, 125, 425, 609, 702, 970, 1004
AjiI	CACGTC	1 cut(s)	1012
AjnI	CCWGG	2 cut(s)	243, 625
AleI	CACNNNNGTG	1 cut(s)	570
AluBI	AGCT	6 cut(s)	75, 121, 191, 518, 880, 948
AluI	AGCT	6 cut(s)	75, 121, 191, 518, 880, 948
AlwI	GGATC	1 cut(s)	734
AoxI	GGCC	2 cut(s)	63, 347
ApeKI	GCWGC	6 cut(s)	35, 38, 95, 191, 416, 615
ApoI	RAATTY	3 cut(s)	15, 697, 1039
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
AspS9I	GGNCC	2 cut(s)	63, 776
AsuHPI	GGTGA	2 cut(s)	863, 965
AvaII	GGWCC	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	1014
BbvI	GCAGC	6 cut(s)	22, 25, 107, 178, 403, 602
BccI	CCATC	6 cut(s)	74, 177, 671, 882, 899, 953
BcgI	CGANNNNNNTGC	2 cut(s)	794, 828
BciT130I	CCWGG	2 cut(s)	245, 627
BfaI	CTAG	1 cut(s)	491
BfuAI	ACCTGC	1 cut(s)	13
BglII	AGATCT	1 cut(s)	687
BisI	GCNGC	7 cut(s)	36, 39, 96, 192, 417, 616, 1077
BlsI	GCNGC	7 cut(s)	37, 40, 97, 193, 418, 617, 1078
Bme1390I	CCNGG	2 cut(s)	245, 627
Bme18I	GGWCC	1 cut(s)	776
BmgBI	CACGTC	1 cut(s)	1012
BmgT120I	GGNCC	2 cut(s)	63, 776
BmiI	GGNNCC	2 cut(s)	64, 683
BmrFI	CCNGG	2 cut(s)	245, 627
BmsI	GCATC	2 cut(s)	322, 1057
BpiI	GAAGAC	1 cut(s)	1014
BpmI	CTGGAG	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	4 cut(s)	174, 244, 568, 625
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	1019
Bse1I	ACTGG	4 cut(s)	229, 616, 779, 1059
BseBI	CCWGG	2 cut(s)	245, 627
BseDI	CCNNGG	4 cut(s)	174, 244, 568, 625
BseGI	GGATG	4 cut(s)	188, 893, 1031, 1072
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	4 cut(s)	229, 616, 779, 1059
BseXI	GCAGC	6 cut(s)	22, 25, 107, 178, 403, 602
BseYI	CCCAGC	1 cut(s)	948
BshFI	GGCC	2 cut(s)	65, 349
BsiSI	CCGG	1 cut(s)	1020
BslFI	GGGAC	1 cut(s)	907
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	907
BsmI	GAATGC	1 cut(s)	791
BsnI	GGCC	2 cut(s)	65, 349
Bsp143I	GATC	6 cut(s)	147, 436, 484, 687, 739, 972
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	4 cut(s)	20, 342, 553, 1076
BspANI	GGCC	2 cut(s)	65, 349
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	64, 683
BspMI	ACCTGC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	734
BsrFI	RCCGGY	1 cut(s)	1019
BsrI	ACTGG	4 cut(s)	229, 616, 779, 1059
BssAI	RCCGGY	1 cut(s)	1019
BssECI	CCNNGG	4 cut(s)	174, 244, 568, 625
BssMI	GATC	6 cut(s)	147, 436, 484, 687, 739, 972
BssT1I	CCWWGG	2 cut(s)	174, 568
Bst2UI	CCWGG	2 cut(s)	245, 627
Bst4CI	ACNGT	5 cut(s)	87, 223, 395, 749, 799
Bst6I	CTCTTC	2 cut(s)	579, 973
BstC8I	GCNNGC	2 cut(s)	620, 639
BstDEI	CTNAG	2 cut(s)	117, 351
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	4 cut(s)	188, 893, 1031, 1072
BstKTI	GATC	6 cut(s)	150, 439, 487, 690, 742, 975
BstMBI	GATC	6 cut(s)	147, 436, 484, 687, 739, 972
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 416, 425, 1076
BstNI	CCWGG	2 cut(s)	245, 627
BstNSI	RCATGY	1 cut(s)	845
BstSCI	CCNGG	2 cut(s)	243, 625
BstV1I	GCAGC	6 cut(s)	22, 25, 107, 178, 403, 602
BstV2I	GAAGAC	1 cut(s)	1014
BstX2I	RGATCY	1 cut(s)	687
BstYI	RGATCY	1 cut(s)	687
BsuRI	GGCC	2 cut(s)	65, 349
BtgI	CCRYGG	1 cut(s)	568
BtrI	CACGTC	1 cut(s)	1012
BtsCI	GGATG	4 cut(s)	188, 893, 1031, 1072
BtsIMutI	CAGTG	8 cut(s)	219, 359, 391, 579, 724, 795, 941, 1066
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	2 cut(s)	620, 639
Cfr10I	RCCGGY	1 cut(s)	1019
Cfr13I	GGNCC	2 cut(s)	63, 776
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	7 cut(s)	196, 460, 508, 569, 754, 842, 869
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	2 cut(s)	117, 351
DpnI	GATC	6 cut(s)	149, 438, 486, 689, 741, 974
DpnII	GATC	6 cut(s)	147, 436, 484, 687, 739, 972
Eam1104I	CTCTTC	2 cut(s)	579, 973
EarI	CTCTTC	2 cut(s)	579, 973
Eco130I	CCWWGG	2 cut(s)	174, 568
Eco32I	GATATC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	776
Eco57I	CTGAAG	2 cut(s)	122, 603
EcoRI	GAATTC	2 cut(s)	15, 697
EcoRII	CCWGG	2 cut(s)	243, 625
EcoRV	GATATC	1 cut(s)	536
EcoT14I	CCWWGG	2 cut(s)	174, 568
ErhI	CCWWGG	2 cut(s)	174, 568
FaeI	CATG	7 cut(s)	199, 463, 511, 572, 757, 845, 872
FaqI	GGGAC	1 cut(s)	907
FatI	CATG	7 cut(s)	195, 459, 507, 568, 753, 841, 868
Fnu4HI	GCNGC	7 cut(s)	36, 39, 96, 192, 417, 616, 1077
FokI	GGATG	4 cut(s)	195, 900, 1018, 1079
Fsp4HI	GCNGC	7 cut(s)	36, 39, 96, 192, 417, 616, 1077
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	7 cut(s)	36, 39, 96, 192, 417, 616, 1077
GsaI	CCCAGC	1 cut(s)	952
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	65, 349
HapII	CCGG	1 cut(s)	1020
Hin1II	CATG	7 cut(s)	199, 463, 511, 572, 757, 845, 872
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	8 cut(s)	143, 199, 207, 249, 605, 649, 729, 931
HpaII	CCGG	1 cut(s)	1020
HphI	GGTGA	2 cut(s)	863, 965
Hpy166II	GTNNAC	2 cut(s)	802, 835
Hpy188I	TCNGA	4 cut(s)	436, 648, 739, 977
Hpy188III	TCNNGA	4 cut(s)	140, 691, 828, 970
Hpy8I	GTNNAC	2 cut(s)	802, 835
HpyAV	CCTTC	1 cut(s)	1038
HpyCH4III	ACNGT	5 cut(s)	87, 223, 395, 749, 799
HpyCH4IV	ACGT	1 cut(s)	1011
HpyCH4V	TGCA	5 cut(s)	95, 238, 277, 791, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 416, 425, 1076
HpyF3I	CTNAG	2 cut(s)	117, 351
HpySE526I	ACGT	1 cut(s)	1011
Hsp92II	CATG	7 cut(s)	199, 463, 511, 572, 757, 845, 872
Kzo9I	GATC	6 cut(s)	147, 436, 484, 687, 739, 972
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	6 cut(s)	22, 25, 107, 178, 403, 602
LweI	GCATC	2 cut(s)	322, 1057
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	1011
MaeIII	GTNAC	5 cut(s)	51, 356, 389, 577, 590
MalI	GATC	6 cut(s)	149, 438, 486, 689, 741, 974
MboI	GATC	6 cut(s)	147, 436, 484, 687, 739, 972
MboII	GAAGA	7 cut(s)	128, 381, 596, 706, 990, 1016, 1019
MflI	RGATCY	1 cut(s)	687
MluCI	AATT	8 cut(s)	15, 214, 325, 540, 697, 882, 999, 1039
MlyI	GAGTC	3 cut(s)	137, 258, 643
MmeI	TCCRAC	1 cut(s)	671
MseI	TTAA	5 cut(s)	153, 480, 663, 846, 876
MslI	CAYNNNNRTG	1 cut(s)	570
MspI	CCGG	1 cut(s)	1020
MspR9I	CCNGG	2 cut(s)	245, 627
Mva1269I	GAATGC	1 cut(s)	791
MvaI	CCWGG	2 cut(s)	245, 627
MwoI	GCNNNNNNNGC	4 cut(s)	341, 416, 425, 1076
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	6 cut(s)	147, 436, 484, 687, 739, 972
NlaIII	CATG	7 cut(s)	199, 463, 511, 572, 757, 845, 872
NlaIV	GGNNCC	2 cut(s)	64, 683
NmuCI	GTSAC	3 cut(s)	389, 577, 590
NspI	RCATGY	1 cut(s)	845
OliI	CACNNNNGTG	1 cut(s)	570
PaqCI	CACCTGC	1 cut(s)	13
PctI	GAATGC	1 cut(s)	791
PfeI	GAWTC	5 cut(s)	199, 207, 605, 729, 931
PkrI	GCNGC	7 cut(s)	37, 40, 97, 193, 418, 617, 1078
PleI	GAGTC	3 cut(s)	137, 257, 643
PpsI	GAGTC	3 cut(s)	137, 257, 643
PsiI	TTATAA	1 cut(s)	1046
Psp6I	CCWGG	2 cut(s)	243, 625
PspFI	CCCAGC	1 cut(s)	948
PspGI	CCWGG	2 cut(s)	243, 625
PspN4I	GGNNCC	2 cut(s)	64, 683
PspPI	GGNCC	2 cut(s)	63, 776
PsuI	RGATCY	1 cut(s)	687
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	5 cut(s)	153, 480, 663, 846, 876
SatI	GCNGC	7 cut(s)	36, 39, 96, 192, 417, 616, 1077
Sau3AI	GATC	6 cut(s)	147, 436, 484, 687, 739, 972
Sau96I	GGNCC	2 cut(s)	63, 776
SchI	GAGTC	3 cut(s)	137, 258, 643
ScrFI	CCNGG	2 cut(s)	245, 627
SfaNI	GCATC	2 cut(s)	322, 1057
SinI	GGWCC	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	8 cut(s)	15, 214, 325, 540, 697, 882, 999, 1039
SsiI	CCGC	4 cut(s)	20, 342, 553, 1076
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	243, 625
StyI	CCWWGG	2 cut(s)	174, 568
TaaI	ACNGT	5 cut(s)	87, 223, 395, 749, 799
TaiI	ACGT	1 cut(s)	1014
TaqI	TCGA	2 cut(s)	146, 205
TasI	AATT	8 cut(s)	15, 214, 325, 540, 697, 882, 999, 1039
TauI	GCSGC	1 cut(s)	1079
TfiI	GAWTC	5 cut(s)	199, 207, 605, 729, 931
Tru1I	TTAA	5 cut(s)	153, 480, 663, 846, 876
Tru9I	TTAA	5 cut(s)	153, 480, 663, 846, 876
TscAI	CASTG	8 cut(s)	226, 359, 398, 586, 724, 802, 941, 1066
TseFI	GTSAC	3 cut(s)	389, 577, 590
TseI	GCWGC	6 cut(s)	35, 38, 95, 191, 416, 615
Tsp45I	GTSAC	3 cut(s)	389, 577, 590
TspDTI	ATGAA	5 cut(s)	180, 212, 476, 496, 1020
TspRI	CASTG	8 cut(s)	226, 359, 398, 586, 724, 802, 941, 1066
VpaK11BI	GGWCC	1 cut(s)	776
XapI	RAATTY	3 cut(s)	15, 697, 1039
XceI	RCATGY	1 cut(s)	845
XcmI	CCANNNNNNNNNTGG	1 cut(s)	546
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.