Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006040.1

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Forward (+)

55149 .. 58315

Gene Structure 3167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006040.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atgatggcggcgaagctctcttttctgcctctgctcttactttttggggccgtttcgcagtttgttgcagcaaaaccgctttcccagagtaagctccagtctcctgttcttcaggagtcaatcattaaggagataaatgaaaaccccgaggcaggatggcaagctgccatgagtcctcgcctctccaattacactgttggtgagtttatgcatcttctgggagtcaaaccaatacccaaaaaggaattgttgggtgtacccataggtcactgtggctcttgttgggcttttgctgctgttgaagcactatcagatcgtttctgcatccaatttggcaagaacacatctctgtctgttaatgatctcttagcatgctgtggttttatgtgtggaaatggttgtgatggtggaattccaatttatgcatggcgttactttgtccaccacggtgttgtcactgaagagtgtgatccatactttgatcaaactggctgttcccaccctggttgtgagcctgcatatcctacaccaaagtgcattagaaagtgtgtagatgggaaccagatgtggagccgggcaaagcgttacagtgtcagcgcatataggatccattctgatccacacagtattatggcggaagtctataagaacggaccagttgaagttgccttcaccgtttatgaggattttgcatactataaatctggagtttacaagcatattaaaggtgatgctctgggaggtcatgctgttaagctaattgggtggggcacatctgacgctggagaggactattggcttatggcaaatcagtggaatagaagctggggagatgatggttacttcatgatcaaaagaggaacaaacgagtgtggaatcgaagaggatgtggttgctggcttgccttcatcgaaaaattttataagcgaggttgcaagcatggatgctttcggggatgttgcttcagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

323

Amino Acids

35.45

Weight (kDa)

5.72

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	923
AciI	CCGC	3 cut(s)	8, 77, 635
AclWI	GGATC	4 cut(s)	464, 601, 611, 614
AcsI	RAATTY	2 cut(s)	411, 916
AcuI	CTGAAG	3 cut(s)	95, 480, 948
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	302, 662
AjnI	CCWGG	1 cut(s)	502
AleI	CACNNNNGTG	2 cut(s)	447, 532
AluBI	AGCT	5 cut(s)	16, 94, 164, 757, 825
AluI	AGCT	5 cut(s)	16, 94, 164, 757, 825
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	4 cut(s)	464, 601, 611, 614
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	3 cut(s)	68, 164, 293
ApoI	RAATTY	2 cut(s)	411, 916
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	48, 653
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	3 cut(s)	212, 664, 740
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	773
BamHI	GGATCC	1 cut(s)	606
BbvI	GCAGC	3 cut(s)	80, 151, 280
BccI	CCATC	4 cut(s)	150, 398, 548, 830
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	504
BclI	TGATCA	2 cut(s)	481, 849
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	105
BisI	GCNGC	4 cut(s)	9, 69, 165, 294
BlsI	GCNGC	4 cut(s)	10, 70, 166, 295
Bme1390I	CCNGG	2 cut(s)	504, 575
Bme18I	GGWCC	1 cut(s)	653
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	2 cut(s)	48, 653
BmiI	GGNNCC	4 cut(s)	49, 560, 572, 608
BmrFI	CCNGG	2 cut(s)	504, 575
BmsI	GCATC	4 cut(s)	220, 333, 721, 934
BpmI	CTGGAG	3 cut(s)	80, 726, 804
BpuMI	CCSGG	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	147, 445, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	3 cut(s)	97, 493, 656
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	3 cut(s)	147, 445, 502
BseGI	GGATG	5 cut(s)	161, 324, 892, 949, 961
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseNI	ACTGG	3 cut(s)	97, 493, 656
BseSI	GKGCMC	1 cut(s)	773
BseXI	GCAGC	3 cut(s)	80, 151, 280
BseYI	CCCAGC	1 cut(s)	825
BshFI	GGCC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp143I	GATC	7 cut(s)	313, 361, 469, 481, 606, 616, 849
BspACI	CCGC	3 cut(s)	8, 77, 635
BspANI	GGCC	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	846
BspLI	GGNNCC	4 cut(s)	49, 560, 572, 608
BspPI	GGATC	4 cut(s)	464, 601, 611, 614
BsrI	ACTGG	3 cut(s)	97, 493, 656
BssECI	CCNNGG	3 cut(s)	147, 445, 502
BssMI	GATC	7 cut(s)	313, 361, 469, 481, 606, 616, 849
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	6 cut(s)	196, 272, 449, 590, 626, 676
Bst6I	CTCTTC	2 cut(s)	456, 876
BstC8I	GCNNGC	6 cut(s)	162, 373, 516, 898, 902, 937
BstDEI	CTNAG	1 cut(s)	367
BstDSI	CCRYGG	1 cut(s)	445
BstF5I	GGATG	5 cut(s)	161, 324, 892, 949, 961
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	7 cut(s)	316, 364, 472, 484, 609, 619, 852
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	7 cut(s)	313, 361, 469, 481, 606, 616, 849
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 302
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	2 cut(s)	502, 573
BstSLI	GKGCMC	1 cut(s)	773
BstV1I	GCAGC	3 cut(s)	80, 151, 280
BstX2I	RGATCY	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	445
BtsCI	GGATG	5 cut(s)	161, 324, 892, 949, 961
BtsIMutI	CAGTG	5 cut(s)	192, 268, 456, 595, 818
Cac8I	GCNNGC	6 cut(s)	162, 373, 516, 898, 902, 937
CciI	TCATGA	1 cut(s)	846
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	48, 653
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	1 cut(s)	257
CspCI	CAANNNNNGTGG	2 cut(s)	488, 523
CviAII	CATG	6 cut(s)	169, 372, 426, 746, 847, 940
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	7 cut(s)	315, 363, 471, 483, 608, 618, 851
DpnII	GATC	7 cut(s)	313, 361, 469, 481, 606, 616, 849
Eam1104I	CTCTTC	2 cut(s)	456, 876
EarI	CTCTTC	2 cut(s)	456, 876
EciI	GGCGGA	1 cut(s)	650
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	3 cut(s)	95, 480, 948
Eco88I	CYCGRG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	502
EcoT22I	ATGCAT	2 cut(s)	213, 427
FaeI	CATG	6 cut(s)	172, 375, 429, 749, 850, 943
FatI	CATG	6 cut(s)	168, 371, 425, 745, 846, 939
FbaI	TGATCA	2 cut(s)	481, 849
Fnu4HI	GCNGC	4 cut(s)	9, 69, 165, 294
FokI	GGATG	5 cut(s)	168, 311, 899, 956, 968
Fsp4HI	GCNGC	4 cut(s)	9, 69, 165, 294
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	4 cut(s)	9, 69, 165, 294
GsaI	CCCAGC	1 cut(s)	829
GsuI	CTGGAG	3 cut(s)	80, 726, 804
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	574
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	6 cut(s)	172, 375, 429, 749, 850, 943
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HinfI	GANTC	4 cut(s)	116, 172, 222, 876
HpaII	CCGG	1 cut(s)	574
HphI	GGTGA	3 cut(s)	212, 664, 740
Hpy166II	GTNNAC	3 cut(s)	257, 442, 712
Hpy188I	TCNGA	3 cut(s)	313, 616, 778
Hpy188III	TCNNGA	3 cut(s)	113, 705, 847
Hpy8I	GTNNAC	3 cut(s)	257, 442, 712
HpyAV	CCTTC	2 cut(s)	679, 915
HpyCH4III	ACNGT	6 cut(s)	196, 272, 449, 590, 626, 676
HpyCH4V	TGCA	8 cut(s)	68, 211, 324, 425, 518, 537, 692, 935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 302
HpyF3I	CTNAG	1 cut(s)	367
Hsp92II	CATG	6 cut(s)	172, 375, 429, 749, 850, 943
HspAI	GCGC	1 cut(s)	597
Ksp22I	TGATCA	2 cut(s)	481, 849
Kzo9I	GATC	7 cut(s)	313, 361, 469, 481, 606, 616, 849
LmnI	GCTCC	2 cut(s)	99, 570
Lsp1109I	GCAGC	3 cut(s)	80, 151, 280
LweI	GCATC	4 cut(s)	220, 333, 721, 934
MaeIII	GTNAC	5 cut(s)	266, 431, 454, 584, 839
MalI	GATC	7 cut(s)	315, 363, 471, 483, 608, 618, 851
MboI	GATC	7 cut(s)	313, 361, 469, 481, 606, 616, 849
MboII	GAAGA	4 cut(s)	101, 206, 473, 893
MflI	RGATCY	1 cut(s)	606
MhlI	GDGCHC	1 cut(s)	773
MluCI	AATT	7 cut(s)	187, 245, 329, 411, 417, 759, 916
MlyI	GAGTC	3 cut(s)	125, 181, 231
Mph1103I	ATGCAT	2 cut(s)	213, 427
MseI	TTAA	4 cut(s)	126, 357, 723, 753
MslI	CAYNNNNRTG	2 cut(s)	447, 532
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	2 cut(s)	504, 575
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	2 cut(s)	293, 302
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	7 cut(s)	313, 361, 469, 481, 606, 616, 849
NlaIII	CATG	6 cut(s)	172, 375, 429, 749, 850, 943
NlaIV	GGNNCC	4 cut(s)	49, 560, 572, 608
NmuCI	GTSAC	2 cut(s)	266, 454
NsiI	ATGCAT	2 cut(s)	213, 427
NspI	RCATGY	1 cut(s)	375
OliI	CACNNNNGTG	2 cut(s)	447, 532
PaeI	GCATGC	1 cut(s)	375
PagI	TCATGA	1 cut(s)	846
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	4 cut(s)	10, 70, 166, 295
PleI	GAGTC	3 cut(s)	124, 180, 230
PpsI	GAGTC	3 cut(s)	124, 180, 230
PsiI	TTATAA	1 cut(s)	923
Psp6I	CCWGG	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	825
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	4 cut(s)	49, 560, 572, 608
PspPI	GGNCC	2 cut(s)	48, 653
PsuI	RGATCY	1 cut(s)	606
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	2 cut(s)	447, 532
SaqAI	TTAA	4 cut(s)	126, 357, 723, 753
SatI	GCNGC	4 cut(s)	9, 69, 165, 294
Sau3AI	GATC	7 cut(s)	313, 361, 469, 481, 606, 616, 849
Sau96I	GGNCC	2 cut(s)	48, 653
SchI	GAGTC	3 cut(s)	125, 181, 231
ScrFI	CCNGG	2 cut(s)	504, 575
SduI	GDGCHC	1 cut(s)	773
SetI	ASST	9 cut(s)	18, 96, 166, 268, 730, 745, 759, 827, 933
SfaNI	GCATC	4 cut(s)	220, 333, 721, 934
SinI	GGWCC	1 cut(s)	653
SmiMI	CAYNNNNRTG	2 cut(s)	447, 532
SphI	GCATGC	1 cut(s)	375
Sse9I	AATT	7 cut(s)	187, 245, 329, 411, 417, 759, 916
SsiI	CCGC	3 cut(s)	8, 77, 635
StyD4I	CCNGG	2 cut(s)	502, 573
TaaI	ACNGT	6 cut(s)	196, 272, 449, 590, 626, 676
TaqI	TCGA	2 cut(s)	879, 911
TasI	AATT	7 cut(s)	187, 245, 329, 411, 417, 759, 916
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	4 cut(s)	126, 357, 723, 753
Tru9I	TTAA	4 cut(s)	126, 357, 723, 753
TscAI	CASTG	5 cut(s)	199, 275, 463, 595, 818
TseFI	GTSAC	2 cut(s)	266, 454
TseI	GCWGC	3 cut(s)	68, 164, 293
Tsp45I	GTSAC	2 cut(s)	266, 454
TspDTI	ATGAA	3 cut(s)	153, 835, 897
TspGWI	ACGGA	1 cut(s)	666
TspRI	CASTG	5 cut(s)	199, 275, 463, 595, 818
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	2 cut(s)	411, 916
XceI	RCATGY	1 cut(s)	375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
Zsp2I	ATGCAT	2 cut(s)	213, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.