Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Forward (+)

21815 .. 26891

Gene Structure 5077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G000200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAACGGGAGGAAGATGGCTACAATTCAGCAGCTATATTTTGCGACTTCGCTGTTGCTTTTAGGCGCCATTTCCGGCTTTTACCCACAGTTCATTGCAGCCAAACCAGTTACCAAGAGTAAGCTTAATTCTCGTATTCTTCAGGACTCAATCATTAAGCAGATAAATGACAACCCCATGGCTGGATGGGAAGCTGCCATGAATCCCCGATTCTCCAATTACACTGTTAGCCAGTTTATGCACCTTCTGGGAGTTAAACCAACACCCCGAAAGGATTTGCAGAGTTTTCCTATTTTAACTCATCCAAAATCTTTGAAGTTGCCAACTAATTTTGATGCAAGAACAGCTTGGCCTCAGTGCAACACAATTGGAAGAATTCTAGATCAGGGTCACTGTGGCTCTTGTTGGGCTTTTGCTGCTGTTGAAGCACTATCAGACCGTTTTTGCATCCATTTTGGCATGAACATATCACTTTCTGTTAATGATCTCTTAGCGTGTTGTGGTTTCATGTGTGGAGATGGTTGTGATGGGGGGTATCCAATTTATGCTTGGCGATACTTTGTCCACCACGGTGTTGTCACTGAAGAGTGTGACCCATACTTCGATCCAACTGGCTGTTCACACCCTGGGTGTGAGCCCGCATATCCTACTCCAAAGTGTGTTAAAAAGTGTACAGATAAAAACCAGCTATGGAAGAATTCAAAGCGTTATAGTATCAATGCATATAGAATCAATTCTGATTCCCACAGTATCATGGCAGAGGTTTATAGTAATGGACCAGTTGAGGTCGCCTTCACTGTTTACGAGGATTTTGCACACTATAAATCAGGAGTTTACAGACATATTAAAGGTGATGTATTGGGAGGTCATGCTGTTAAGCTAATTGGGTGGGGGACAACCGATGCTGGGGAGGACTATTGGCTTCTCGCAAATCAGTGGAACAGAAGCTGGGGTGACGATGGTTACTTCATGATCAAAAGAGGAACAAATGAGTGTGGAATTGAAGAGGATGTGGTTGCTGGTTTGCCTTCATTGAAAAATTTTATAAGGGAAGTTGCGAGTGCGGATGCTGTTGTGGGTGATGTTTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

365

Amino Acids

40.48

Weight (kDa)

6.81

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1046
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	2 cut(s)	639, 1064
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	3 cut(s)	375, 697, 1039
AcuI	CTGAAG	2 cut(s)	125, 603
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	673
AfiI	CCNNNNNNNGG	2 cut(s)	182, 906
AgsI	TTSAA	6 cut(s)	316, 425, 702, 1004, 1036, 1089
AjnI	CCWGG	1 cut(s)	625
AjuI	GAANNNNNNNTTGG	2 cut(s)	601, 633
AleI	CACNNNNGTG	1 cut(s)	570
AluBI	AGCT	7 cut(s)	34, 124, 194, 347, 688, 880, 948
AluI	AGCT	7 cut(s)	34, 124, 194, 347, 688, 880, 948
AlwI	GGATC	1 cut(s)	599
AlwNI	CAGNNNCTG	1 cut(s)	948
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	4 cut(s)	31, 98, 194, 416
ApoI	RAATTY	3 cut(s)	375, 697, 1039
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
Asp700I	GAANNNNTTC	1 cut(s)	733
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	776
AsuHPI	GGTGA	3 cut(s)	863, 965, 1091
AvaII	GGWCC	1 cut(s)	776
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	639
BbvI	GCAGC	4 cut(s)	43, 110, 181, 403
BccI	CCATC	5 cut(s)	10, 180, 512, 521, 953
BcgI	CGANNNNNNTGC	2 cut(s)	794, 828
BciT130I	CCWGG	1 cut(s)	627
BciVI	GTATCC	1 cut(s)	546
BclI	TGATCA	1 cut(s)	972
BfaI	CTAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	546
BisI	GCNGC	4 cut(s)	32, 99, 195, 417
BlsI	GCNGC	4 cut(s)	33, 100, 196, 418
Bme1390I	CCNGG	1 cut(s)	627
Bme18I	GGWCC	1 cut(s)	776
BmgT120I	GGNCC	1 cut(s)	776
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	627
BmsI	GCATC	4 cut(s)	325, 456, 892, 1057
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	4 cut(s)	177, 568, 625, 626
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 906
Bse1I	ACTGG	4 cut(s)	107, 232, 616, 779
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	627
BseDI	CCNNGG	4 cut(s)	177, 568, 625, 626
BseGI	GGATG	5 cut(s)	191, 301, 447, 1015, 1072
BseLI	CCNNNNNNNGG	2 cut(s)	182, 906
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	4 cut(s)	107, 232, 616, 779
BseXI	GCAGC	4 cut(s)	43, 110, 181, 403
BseYI	CCCAGC	2 cut(s)	905, 948
BshFI	GGCC	1 cut(s)	352
BshNI	GGYRCC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	907
BslI	CCNNNNNNNGG	2 cut(s)	182, 906
BsmFI	GGGAC	1 cut(s)	907
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp1407I	TGTACA	1 cut(s)	671
Bsp143I	GATC	4 cut(s)	382, 484, 604, 972
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	2 cut(s)	639, 1064
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	969
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	93
BsrGI	TGTACA	1 cut(s)	671
BsrI	ACTGG	4 cut(s)	107, 232, 616, 779
BssECI	CCNNGG	4 cut(s)	177, 568, 625, 626
BssMI	GATC	4 cut(s)	382, 484, 604, 972
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	7 cut(s)	90, 226, 395, 440, 572, 749, 799
Bst6I	CTCTTC	2 cut(s)	579, 999
BstACI	GRCGYC	1 cut(s)	66
BstAUI	TGTACA	1 cut(s)	671
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	2 cut(s)	354, 490
BstDSI	CCRYGG	2 cut(s)	177, 568
BstF5I	GGATG	5 cut(s)	191, 301, 447, 1015, 1072
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	4 cut(s)	385, 487, 607, 975
BstMBI	GATC	4 cut(s)	382, 484, 604, 972
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 416, 425
BstNI	CCWGG	1 cut(s)	627
BstSCI	CCNGG	1 cut(s)	625
BstV1I	GCAGC	4 cut(s)	43, 110, 181, 403
BsuI	GTATCC	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	352
BtgI	CCRYGG	2 cut(s)	177, 568
BtsCI	GGATG	5 cut(s)	191, 301, 447, 1015, 1072
BtsIMutI	CAGTG	6 cut(s)	222, 362, 391, 579, 795, 941
Cac8I	GCNNGC	1 cut(s)	639
CaiI	CAGNNNCTG	1 cut(s)	948
CciI	TCATGA	1 cut(s)	969
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	776
Csp6I	GTAC	1 cut(s)	672
CviAII	CATG	7 cut(s)	178, 199, 460, 508, 754, 869, 970
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	2 cut(s)	354, 490
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	4 cut(s)	384, 486, 606, 974
DpnII	GATC	4 cut(s)	382, 484, 604, 972
Eam1104I	CTCTTC	2 cut(s)	579, 999
EarI	CTCTTC	2 cut(s)	579, 999
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	776
Eco57I	CTGAAG	2 cut(s)	125, 603
EcoRI	GAATTC	2 cut(s)	375, 697
EcoRII	CCWGG	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	639
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	7 cut(s)	181, 202, 463, 511, 757, 872, 973
FalI	AAGNNNNNCTT	2 cut(s)	331, 363
FaqI	GGGAC	1 cut(s)	907
FatI	CATG	7 cut(s)	177, 198, 459, 507, 753, 868, 969
FauI	CCCGC	1 cut(s)	646
FbaI	TGATCA	1 cut(s)	972
Fnu4HI	GCNGC	4 cut(s)	32, 99, 195, 417
FokI	GGATG	5 cut(s)	198, 288, 434, 1022, 1079
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	4 cut(s)	32, 99, 195, 417
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	4 cut(s)	32, 99, 195, 417
GsaI	CCCAGC	2 cut(s)	909, 952
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	7 cut(s)	181, 202, 463, 511, 757, 872, 973
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	5 cut(s)	146, 202, 210, 729, 740
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	3 cut(s)	863, 965, 1091
Hpy166II	GTNNAC	5 cut(s)	565, 620, 672, 802, 835
Hpy188I	TCNGA	2 cut(s)	436, 739
Hpy188III	TCNNGA	4 cut(s)	143, 380, 828, 970
Hpy8I	GTNNAC	5 cut(s)	565, 620, 672, 802, 835
HpyAV	CCTTC	3 cut(s)	254, 802, 1038
HpyCH4III	ACNGT	7 cut(s)	90, 226, 395, 440, 572, 749, 799
HpyCH4V	TGCA	8 cut(s)	98, 241, 280, 338, 360, 447, 722, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 416, 425
HpyF3I	CTNAG	2 cut(s)	354, 490
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	7 cut(s)	181, 202, 463, 511, 757, 872, 973
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	972
Kzo9I	GATC	4 cut(s)	382, 484, 604, 972
Lsp1109I	GCAGC	4 cut(s)	43, 110, 181, 403
LweI	GCATC	4 cut(s)	325, 456, 892, 1057
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	6 cut(s)	109, 389, 577, 590, 953, 962
MalI	GATC	4 cut(s)	384, 486, 606, 974
MboI	GATC	4 cut(s)	382, 484, 604, 972
MboII	GAAGA	6 cut(s)	25, 131, 384, 596, 706, 1016
MfeI	CAATTG	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	639
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	632
MnlI	CCTC	9 cut(s)	3, 363, 754, 778, 799, 857, 904, 974, 1000
Mph1103I	ATGCAT	1 cut(s)	724
MroXI	GAANNNNTTC	1 cut(s)	733
MseI	TTAA	8 cut(s)	126, 156, 255, 296, 480, 663, 846, 876
MslI	CAYNNNNRTG	1 cut(s)	570
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	627
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	627
MwoI	GCNNNNNNNGC	3 cut(s)	344, 416, 425
NarI	GGCGCC	1 cut(s)	66
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	4 cut(s)	382, 484, 604, 972
NlaIII	CATG	7 cut(s)	181, 202, 463, 511, 757, 872, 973
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	4 cut(s)	389, 577, 590, 953
NsiI	ATGCAT	1 cut(s)	724
OliI	CACNNNNGTG	1 cut(s)	570
PagI	TCATGA	1 cut(s)	969
PasI	CCCWGGG	1 cut(s)	626
PdmI	GAANNNNTTC	1 cut(s)	733
PfeI	GAWTC	4 cut(s)	202, 210, 729, 740
PkrI	GCNGC	4 cut(s)	33, 100, 196, 418
PleI	GAGTC	1 cut(s)	140
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	140
PsiI	TTATAA	1 cut(s)	1046
Psp6I	CCWGG	1 cut(s)	625
PspFI	CCCAGC	2 cut(s)	905, 948
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	776
PstNI	CAGNNNCTG	1 cut(s)	948
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	8 cut(s)	126, 156, 255, 296, 480, 663, 846, 876
SatI	GCNGC	4 cut(s)	32, 99, 195, 417
Sau3AI	GATC	4 cut(s)	382, 484, 604, 972
Sau96I	GGNCC	1 cut(s)	776
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	627
SduI	GDGCHC	1 cut(s)	639
SfaNI	GCATC	4 cut(s)	325, 456, 892, 1057
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	570
SsiI	CCGC	2 cut(s)	639, 1064
SspDI	GGCGCC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	625
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	7 cut(s)	90, 226, 395, 440, 572, 749, 799
TaqI	TCGA	1 cut(s)	603
TatI	WGTACW	1 cut(s)	671
TfiI	GAWTC	4 cut(s)	202, 210, 729, 740
Tru1I	TTAA	8 cut(s)	126, 156, 255, 296, 480, 663, 846, 876
Tru9I	TTAA	8 cut(s)	126, 156, 255, 296, 480, 663, 846, 876
TscAI	CASTG	6 cut(s)	229, 362, 398, 586, 802, 941
TseFI	GTSAC	4 cut(s)	389, 577, 590, 953
TseI	GCWGC	4 cut(s)	31, 98, 194, 416
Tsp45I	GTSAC	4 cut(s)	389, 577, 590, 953
TspDTI	ATGAA	7 cut(s)	17, 82, 215, 476, 496, 958, 1020
TspRI	CASTG	6 cut(s)	229, 362, 398, 586, 802, 941
VpaK11BI	GGWCC	1 cut(s)	776
XapI	RAATTY	3 cut(s)	375, 697, 1039
XbaI	TCTAGA	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	733
XspI	CTAG	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.