Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Forward (+)

19454758 .. 19457883

Gene Structure 3126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023172

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAAGACGGCGGCGGCGAAGCTCTCTTTTCTGCCTCTGCTCTTACTTTTTGGGGCCGTTTCGCAGTTTGTTGCAGCAAAACCGCTTTCCCAGAGTAAGCTCCAGTCTCCTGTTCTTCAGGAGTCAATCATTAAGGAGATAAATGAAAACCCCGAGGCAGGATGGCAAGCTGCCATGAGTCCTCGCCTCTCCAATTACACTGTTGGTGAGTTTATGCATCTTCTGGGAGTCAAACCAATACCCAAAAAGGAATTGTTGGGTGTACCCGTAGTAAGTCATCCAAAATCTTTGAAGTTGCCAAATAGTTTTGATGCAAGGGAGGCTTGGTCTCAGTGCACCACCATTGGACGAATTCTAGATCAGGGTCACTGTGGCTCTTGTTGGGCTTTTGCTGCTGTTGAAGCACTGTCAGATCGTTTTTGCATCCAATTTGGCAAGAACACATCTCTGTCTGTAAATGATCTCTTAGCGTGCTGTGGTTTTATGTGTGGAAGTGGTTGTGATGGTGGAATCCCAATTTATGCATGGCGTTACTTTGTCCACCACGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATCAAACTGGCTGTTCCCACCCTGGTTGTGAGCCCGCATATCCTACACCAAAGTGCATTAGAAAGTGTGTAGATGGGAACCAGATGTGGAACCAGGCAAAGCGTTACAGTGTCAGCGCATATAGGATCCATTCTGATCCACACAGTATTATGGCGGAAGTCTATAAGAACGGGCCAGTTGAAGTTGCCTTCACCGTTTATGAGGATTTTGCATACTATAAATCTGGAGTTTACAAGCATATTAAAGGTGATGCTCTGGGAGGTCATGCTGTTAAGCTAATTGGGTGGGGCACATCTGACGCTGGAGAGGACTATTGGCTTATGGCAAATCAGTGGAATAGAAGCTGGGGAGATGATGGTTACTTCATGATCAAAAGAGGAACAAACGAGTGTGGAATCGAAGAGGATGTGGTTGCTGGCTTGCCTTCATCGAAAAATTTTATAAGCAAGGTTGCAAGCATGGATGCTTTTGGGGATGTTGCTTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

357

Amino Acids

39.06

Weight (kDa)

6.21

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Propeptide_C1	PF08127	39 - 79	1.3e-08	Peptidase family C1 propeptide
Peptidase_C1	PF00112	99 - 333	1.5e-67	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1022
AciI	CCGC	5 cut(s)	11, 14, 83, 615, 734
AclWI	GGATC	3 cut(s)	700, 710, 713
AcsI	RAATTY	2 cut(s)	351, 1015
AcuI	CTGAAG	3 cut(s)	101, 579, 1047
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	292, 401, 761
AjnI	CCWGG	2 cut(s)	601, 672
AleI	CACNNNNGTG	2 cut(s)	546, 631
AluBI	AGCT	5 cut(s)	22, 100, 170, 856, 924
AluI	AGCT	5 cut(s)	22, 100, 170, 856, 924
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	2 cut(s)	111, 333
Alw44I	GTGCAC	1 cut(s)	334
AlwI	GGATC	3 cut(s)	700, 710, 713
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	54, 752
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	3 cut(s)	74, 170, 392
ApoI	RAATTY	2 cut(s)	351, 1015
ArsI	GACNNNNNNTTYG	2 cut(s)	560, 592
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	2 cut(s)	54, 752
AsuHPI	GGTGA	3 cut(s)	218, 763, 839
AvaI	CYCGRG	1 cut(s)	152
BaeGI	GKGCMC	2 cut(s)	338, 872
BamHI	GGATCC	1 cut(s)	705
BanII	GRGCYC	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	86, 157, 379
BccI	CCATC	4 cut(s)	156, 497, 647, 929
BceAI	ACGGC	2 cut(s)	24, 41
BciT130I	CCWGG	2 cut(s)	603, 674
BclI	TGATCA	2 cut(s)	580, 948
BcoDI	GTCTC	2 cut(s)	111, 333
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	5 cut(s)	12, 15, 75, 171, 393
BlsI	GCNGC	5 cut(s)	13, 16, 76, 172, 394
Bme1390I	CCNGG	2 cut(s)	603, 674
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	54, 752
BmiI	GGNNCC	4 cut(s)	55, 659, 671, 707
BmrFI	CCNGG	2 cut(s)	603, 674
BmsI	GCATC	5 cut(s)	226, 301, 432, 820, 1033
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	3 cut(s)	86, 825, 903
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	153, 544, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	3 cut(s)	103, 592, 755
BseBI	CCWGG	2 cut(s)	603, 674
BseDI	CCNNGG	3 cut(s)	153, 544, 601
BseGI	GGATG	6 cut(s)	167, 277, 423, 991, 1048, 1060
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	3 cut(s)	103, 592, 755
BseSI	GKGCMC	2 cut(s)	338, 872
BseXI	GCAGC	3 cut(s)	86, 157, 379
BseYI	CCCAGC	1 cut(s)	924
BshFI	GGCC	2 cut(s)	56, 754
BsiHKAI	GWGCWC	1 cut(s)	338
BsiHKCI	CYCGRG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	2 cut(s)	111, 333
BsnI	GGCC	2 cut(s)	56, 754
Bso31I	GGTCTC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	3 cut(s)	338, 615, 872
Bsp143I	GATC	7 cut(s)	358, 412, 460, 580, 705, 715, 948
BspACI	CCGC	5 cut(s)	11, 14, 83, 615, 734
BspANI	GGCC	2 cut(s)	56, 754
BspCNI	CTCAG	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	4 cut(s)	55, 659, 671, 707
BspPI	GGATC	3 cut(s)	700, 710, 713
BspTNI	GGTCTC	1 cut(s)	333
BsrI	ACTGG	3 cut(s)	103, 592, 755
BssECI	CCNNGG	3 cut(s)	153, 544, 601
BssMI	GATC	7 cut(s)	358, 412, 460, 580, 705, 715, 948
Bst2UI	CCWGG	2 cut(s)	603, 674
Bst4CI	ACNGT	7 cut(s)	202, 371, 408, 548, 689, 725, 775
Bst6I	CTCTTC	2 cut(s)	555, 975
BstC8I	GCNNGC	6 cut(s)	168, 472, 615, 997, 1001, 1036
BstDEI	CTNAG	2 cut(s)	330, 466
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	6 cut(s)	167, 277, 423, 991, 1048, 1060
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	7 cut(s)	361, 415, 463, 583, 708, 718, 951
BstMAI	GTCTC	2 cut(s)	111, 333
BstMBI	GATC	7 cut(s)	358, 412, 460, 580, 705, 715, 948
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 392, 401
BstNI	CCWGG	2 cut(s)	603, 674
BstSCI	CCNGG	2 cut(s)	601, 672
BstSLI	GKGCMC	2 cut(s)	338, 872
BstV1I	GCAGC	3 cut(s)	86, 157, 379
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	705
BsuRI	GGCC	2 cut(s)	56, 754
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	6 cut(s)	167, 277, 423, 991, 1048, 1060
BtsIMutI	CAGTG	7 cut(s)	198, 338, 367, 404, 555, 694, 917
Cac8I	GCNNGC	6 cut(s)	168, 472, 615, 997, 1001, 1036
CciI	TCATGA	1 cut(s)	945
CfoI	GCGC	1 cut(s)	698
Cfr13I	GGNCC	2 cut(s)	54, 752
CseI	GACGC	1 cut(s)	887
Csp6I	GTAC	1 cut(s)	263
CspCI	CAANNNNNGTGG	2 cut(s)	587, 622
CviAII	CATG	5 cut(s)	175, 525, 845, 946, 1039
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	2 cut(s)	330, 466
DpnI	GATC	7 cut(s)	360, 414, 462, 582, 707, 717, 950
DpnII	GATC	7 cut(s)	358, 412, 460, 580, 705, 715, 948
Eam1104I	CTCTTC	2 cut(s)	555, 975
EarI	CTCTTC	2 cut(s)	555, 975
EciI	GGCGGA	1 cut(s)	749
Eco24I	GRGCYC	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	333
Eco57I	CTGAAG	3 cut(s)	101, 579, 1047
Eco88I	CYCGRG	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	601, 672
EcoT22I	ATGCAT	2 cut(s)	219, 526
EcoT38I	GRGCYC	1 cut(s)	615
FaeI	CATG	5 cut(s)	178, 528, 848, 949, 1042
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	5 cut(s)	174, 524, 844, 945, 1038
FauI	CCCGC	1 cut(s)	622
FbaI	TGATCA	2 cut(s)	580, 948
Fnu4HI	GCNGC	5 cut(s)	12, 15, 75, 171, 393
FokI	GGATG	6 cut(s)	174, 264, 410, 998, 1055, 1067
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	5 cut(s)	12, 15, 75, 171, 393
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	5 cut(s)	12, 15, 75, 171, 393
GsaI	CCCAGC	1 cut(s)	928
GsuI	CTGGAG	3 cut(s)	86, 825, 903
HaeIII	GGCC	2 cut(s)	56, 754
HgaI	GACGC	1 cut(s)	887
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	5 cut(s)	178, 528, 848, 949, 1042
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HinfI	GANTC	5 cut(s)	122, 178, 228, 510, 975
HphI	GGTGA	3 cut(s)	218, 763, 839
Hpy166II	GTNNAC	4 cut(s)	263, 336, 541, 811
Hpy188I	TCNGA	3 cut(s)	412, 715, 877
Hpy188III	TCNNGA	4 cut(s)	119, 356, 804, 946
Hpy8I	GTNNAC	4 cut(s)	263, 336, 541, 811
HpyAV	CCTTC	2 cut(s)	778, 1014
HpyCH4III	ACNGT	7 cut(s)	202, 371, 408, 548, 689, 725, 775
HpyCH4V	TGCA	9 cut(s)	74, 217, 314, 336, 423, 524, 636, 791, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 392, 401
HpyF3I	CTNAG	2 cut(s)	330, 466
Hsp92II	CATG	5 cut(s)	178, 528, 848, 949, 1042
HspAI	GCGC	1 cut(s)	696
Ksp22I	TGATCA	2 cut(s)	580, 948
Kzo9I	GATC	7 cut(s)	358, 412, 460, 580, 705, 715, 948
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	3 cut(s)	86, 157, 379
LweI	GCATC	5 cut(s)	226, 301, 432, 820, 1033
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	6 cut(s)	365, 530, 553, 566, 683, 938
MalI	GATC	7 cut(s)	360, 414, 462, 582, 707, 717, 950
MboI	GATC	7 cut(s)	358, 412, 460, 580, 705, 715, 948
MboII	GAAGA	5 cut(s)	16, 107, 212, 572, 992
MflI	RGATCY	1 cut(s)	705
MhlI	GDGCHC	3 cut(s)	338, 615, 872
MluCI	AATT	7 cut(s)	193, 251, 351, 428, 516, 858, 1015
MlyI	GAGTC	3 cut(s)	131, 187, 237
Mph1103I	ATGCAT	2 cut(s)	219, 526
MseI	TTAA	3 cut(s)	132, 822, 852
MslI	CAYNNNNRTG	2 cut(s)	546, 631
MspR9I	CCNGG	2 cut(s)	603, 674
MvaI	CCWGG	2 cut(s)	603, 674
MwoI	GCNNNNNNNGC	3 cut(s)	320, 392, 401
NdeII	GATC	7 cut(s)	358, 412, 460, 580, 705, 715, 948
NlaIII	CATG	5 cut(s)	178, 528, 848, 949, 1042
NlaIV	GGNNCC	4 cut(s)	55, 659, 671, 707
NmuCI	GTSAC	3 cut(s)	365, 553, 566
NsiI	ATGCAT	2 cut(s)	219, 526
OliI	CACNNNNGTG	2 cut(s)	546, 631
PagI	TCATGA	1 cut(s)	945
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	510, 975
PkrI	GCNGC	5 cut(s)	13, 16, 76, 172, 394
PleI	GAGTC	3 cut(s)	130, 186, 236
PpsI	GAGTC	3 cut(s)	130, 186, 236
PsiI	TTATAA	1 cut(s)	1022
Psp6I	CCWGG	2 cut(s)	601, 672
PspFI	CCCAGC	1 cut(s)	924
PspGI	CCWGG	2 cut(s)	601, 672
PspN4I	GGNNCC	4 cut(s)	55, 659, 671, 707
PspPI	GGNCC	2 cut(s)	54, 752
PsuI	RGATCY	1 cut(s)	705
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	2 cut(s)	546, 631
SaqAI	TTAA	3 cut(s)	132, 822, 852
SatI	GCNGC	5 cut(s)	12, 15, 75, 171, 393
Sau3AI	GATC	7 cut(s)	358, 412, 460, 580, 705, 715, 948
Sau96I	GGNCC	2 cut(s)	54, 752
SchI	GAGTC	3 cut(s)	131, 187, 237
ScrFI	CCNGG	2 cut(s)	603, 674
SduI	GDGCHC	3 cut(s)	338, 615, 872
SetI	ASST	8 cut(s)	24, 102, 172, 829, 844, 858, 926, 1032
SfaNI	GCATC	5 cut(s)	226, 301, 432, 820, 1033
SmiMI	CAYNNNNRTG	2 cut(s)	546, 631
Sse9I	AATT	7 cut(s)	193, 251, 351, 428, 516, 858, 1015
SsiI	CCGC	5 cut(s)	11, 14, 83, 615, 734
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	601, 672
TaaI	ACNGT	7 cut(s)	202, 371, 408, 548, 689, 725, 775
TaqI	TCGA	2 cut(s)	978, 1010
TasI	AATT	7 cut(s)	193, 251, 351, 428, 516, 858, 1015
TauI	GCSGC	2 cut(s)	14, 17
TfiI	GAWTC	2 cut(s)	510, 975
Tru1I	TTAA	3 cut(s)	132, 822, 852
Tru9I	TTAA	3 cut(s)	132, 822, 852
TscAI	CASTG	7 cut(s)	205, 338, 374, 411, 562, 694, 917
TseFI	GTSAC	3 cut(s)	365, 553, 566
TseI	GCWGC	3 cut(s)	74, 170, 392
Tsp45I	GTSAC	3 cut(s)	365, 553, 566
TspDTI	ATGAA	4 cut(s)	17, 159, 934, 996
TspRI	CASTG	7 cut(s)	205, 338, 374, 411, 562, 694, 917
VneI	GTGCAC	1 cut(s)	334
XapI	RAATTY	2 cut(s)	351, 1015
XbaI	TCTAGA	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	522
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	2 cut(s)	219, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.