Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Reverse (-)

29890440 .. 29893668

Gene Structure 3229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG265900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATGGCGGCGAAGCTCTCTTTTCTGCCTCTGCTCTTACTTTTTGGGGCCGTTTCGCAGTTTGTTGCAGCAAAACCGCTCTCCCAGAGTAAGCTCCAGTCTCCTGTTCTTCAGGAGTCCATCATTAAGGAGATAAATGAAAACCCCGAGGCAGGATGGCAAGCTGCCATGAGTCCTCGCCTCTCCAATTACACTGTTGGTGAGTTTATGCATCTTCTGGGAGTCAAACCAATACCCAAAAAGGAATTGTTGGGTGTACCCATAGTAAGTCATCCGAAATCCTTGAAGTTGCCAAATAGTTTTGATGCAAGGGAGGCTTGGTCTCAGTGCACCACCATTGGACGAATTCTAGATCAGGGTCACTGTGGCTCTTGTTGGGCTTTTGCTGCTGTTGAAGCACTATCAGATCGTTTCTGCATCCAATTTGGCAAGAACACATCTCTGTCTGTTAATGATCTCTTAGCGTGCTGTGGTTTTATGTGTGGAAATGGTTGTGATGGTGGAATTCCAATTTATGCATGGCGTTACTTTGTCCACCACGGTGTTGTCACTGAAGAGTGTGATCCATACTTTGATCAAACTGGCTGTTCCCACCCTGGTTGTGAGCCTGCATATCCTACACCAAAGTGCATTAGAAAGTGTGTAGATGGGAACCAGATGTGGAACCAGGCAAAGCGTTACAGTGTCAGCGCATATAGGATCCATTCTGATCCACACAGTATTATGGCGGAAGTCTATAAGAACGGACCAGTTGAAGTTGCCTTCACCGTTTATGAGGATTTTGCATACTATAAATCTGGAGTTTACAAGCATATTAAAGGTGATGCTCTGGGAGGTCATGCTGTTAAGCTAATTGGGTGGGGCACATCTGACGCTGGAGAGGACTATTGGCTTATCGCGAATCAGTGGAATAGAAGCTGGGGAGATGATGGTTACTTCATGATCAAAAGAGGAACAAACGAGTGTGGAATCGAAGAGGATGTGGTTGCTGGCTTGCCTTCATCGAAAAATTTTATAAGCGAGGTTGCAAGCATGGATGATTTCGGGGATGTTGCTTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

354

Amino Acids

38.95

Weight (kDa)

5.69

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Propeptide_C1	PF08127	37 - 77	1.3e-08	Peptidase family C1 propeptide
Peptidase_C1	PF00112	97 - 331	4.2e-68	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1016
AccBSI	CCGCTC	1 cut(s)	79
AccII	CGCG	1 cut(s)	899
AciI	CCGC	3 cut(s)	8, 77, 728
AclWI	GGATC	4 cut(s)	557, 694, 704, 707
AcsI	RAATTY	3 cut(s)	345, 504, 1009
AcuI	CTGAAG	3 cut(s)	95, 573, 1041
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	286, 395, 755
AjnI	CCWGG	2 cut(s)	595, 666
AleI	CACNNNNGTG	2 cut(s)	540, 625
AluBI	AGCT	5 cut(s)	16, 94, 164, 850, 918
AluI	AGCT	5 cut(s)	16, 94, 164, 850, 918
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	105, 327
Alw44I	GTGCAC	1 cut(s)	328
AlwI	GGATC	4 cut(s)	557, 694, 704, 707
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	328
ApeKI	GCWGC	3 cut(s)	68, 164, 386
ApoI	RAATTY	3 cut(s)	345, 504, 1009
AspLEI	GCGC	1 cut(s)	692
AspS9I	GGNCC	2 cut(s)	48, 746
AsuHPI	GGTGA	3 cut(s)	212, 757, 833
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	746
BaeGI	GKGCMC	2 cut(s)	332, 866
BamHI	GGATCC	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	80, 151, 373
BccI	CCATC	5 cut(s)	128, 150, 491, 641, 923
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	597, 668
BclI	TGATCA	2 cut(s)	574, 942
BcoDI	GTCTC	2 cut(s)	105, 327
BfaI	CTAG	1 cut(s)	350
BisI	GCNGC	4 cut(s)	9, 69, 165, 387
BlsI	GCNGC	4 cut(s)	10, 70, 166, 388
Bme1390I	CCNGG	2 cut(s)	597, 668
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	2 cut(s)	48, 746
BmiI	GGNNCC	4 cut(s)	49, 653, 665, 701
BmrFI	CCNGG	2 cut(s)	597, 668
BmsI	GCATC	4 cut(s)	220, 295, 426, 814
BpmI	CTGGAG	3 cut(s)	80, 819, 897
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	147, 538, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	3 cut(s)	97, 586, 749
BseBI	CCWGG	2 cut(s)	597, 668
BseDI	CCNNGG	3 cut(s)	147, 538, 595
BseGI	GGATG	6 cut(s)	161, 271, 417, 985, 1042, 1054
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	3 cut(s)	97, 586, 749
BseSI	GKGCMC	2 cut(s)	332, 866
BseXI	GCAGC	3 cut(s)	80, 151, 373
BseYI	CCCAGC	1 cut(s)	918
Bsh1236I	CGCG	1 cut(s)	899
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	332
BsiHKCI	CYCGRG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	2 cut(s)	105, 327
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	332, 866
Bsp143I	GATC	8 cut(s)	352, 406, 454, 562, 574, 699, 709, 942
Bsp68I	TCGCGA	1 cut(s)	899
BspACI	CCGC	3 cut(s)	8, 77, 728
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	899
BspHI	TCATGA	1 cut(s)	939
BspLI	GGNNCC	4 cut(s)	49, 653, 665, 701
BspPI	GGATC	4 cut(s)	557, 694, 704, 707
BspTNI	GGTCTC	1 cut(s)	327
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	3 cut(s)	97, 586, 749
BssECI	CCNNGG	3 cut(s)	147, 538, 595
BssMI	GATC	8 cut(s)	352, 406, 454, 562, 574, 699, 709, 942
Bst2UI	CCWGG	2 cut(s)	597, 668
Bst4CI	ACNGT	6 cut(s)	196, 365, 542, 683, 719, 769
Bst6I	CTCTTC	2 cut(s)	549, 969
BstC8I	GCNNGC	6 cut(s)	162, 466, 609, 991, 995, 1030
BstDEI	CTNAG	2 cut(s)	324, 460
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	6 cut(s)	161, 271, 417, 985, 1042, 1054
BstFNI	CGCG	1 cut(s)	899
BstHHI	GCGC	1 cut(s)	692
BstKTI	GATC	8 cut(s)	355, 409, 457, 565, 577, 702, 712, 945
BstMAI	GTCTC	2 cut(s)	105, 327
BstMBI	GATC	8 cut(s)	352, 406, 454, 562, 574, 699, 709, 942
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 386, 395
BstNI	CCWGG	2 cut(s)	597, 668
BstSCI	CCNGG	2 cut(s)	595, 666
BstSLI	GKGCMC	2 cut(s)	332, 866
BstUI	CGCG	1 cut(s)	899
BstV1I	GCAGC	3 cut(s)	80, 151, 373
BstX2I	RGATCY	1 cut(s)	699
BstYI	RGATCY	1 cut(s)	699
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	538
BtsCI	GGATG	6 cut(s)	161, 271, 417, 985, 1042, 1054
BtsIMutI	CAGTG	6 cut(s)	192, 332, 361, 549, 688, 911
BtuMI	TCGCGA	1 cut(s)	899
Cac8I	GCNNGC	6 cut(s)	162, 466, 609, 991, 995, 1030
CciI	TCATGA	1 cut(s)	939
CfoI	GCGC	1 cut(s)	692
Cfr13I	GGNCC	2 cut(s)	48, 746
CseI	GACGC	1 cut(s)	881
Csp6I	GTAC	1 cut(s)	257
CspCI	CAANNNNNGTGG	2 cut(s)	581, 616
CviAII	CATG	5 cut(s)	169, 519, 839, 940, 1033
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	2 cut(s)	324, 460
DpnI	GATC	8 cut(s)	354, 408, 456, 564, 576, 701, 711, 944
DpnII	GATC	8 cut(s)	352, 406, 454, 562, 574, 699, 709, 942
Eam1104I	CTCTTC	2 cut(s)	549, 969
EarI	CTCTTC	2 cut(s)	549, 969
EciI	GGCGGA	1 cut(s)	743
Eco31I	GGTCTC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	746
Eco57I	CTGAAG	3 cut(s)	95, 573, 1041
Eco88I	CYCGRG	1 cut(s)	146
EcoRI	GAATTC	2 cut(s)	345, 504
EcoRII	CCWGG	2 cut(s)	595, 666
EcoT22I	ATGCAT	2 cut(s)	213, 520
FaeI	CATG	5 cut(s)	172, 522, 842, 943, 1036
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FatI	CATG	5 cut(s)	168, 518, 838, 939, 1032
FbaI	TGATCA	2 cut(s)	574, 942
Fnu4HI	GCNGC	4 cut(s)	9, 69, 165, 387
FokI	GGATG	6 cut(s)	168, 258, 404, 992, 1049, 1061
Fsp4HI	GCNGC	4 cut(s)	9, 69, 165, 387
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	691
GluI	GCNGC	4 cut(s)	9, 69, 165, 387
GsaI	CCCAGC	1 cut(s)	922
GsuI	CTGGAG	3 cut(s)	80, 819, 897
HaeIII	GGCC	1 cut(s)	50
HgaI	GACGC	1 cut(s)	881
HhaI	GCGC	1 cut(s)	692
Hin1II	CATG	5 cut(s)	172, 522, 842, 943, 1036
Hin6I	GCGC	1 cut(s)	690
HinP1I	GCGC	1 cut(s)	690
HinfI	GANTC	5 cut(s)	116, 172, 222, 901, 969
HphI	GGTGA	3 cut(s)	212, 757, 833
Hpy166II	GTNNAC	4 cut(s)	257, 330, 535, 805
Hpy188I	TCNGA	4 cut(s)	276, 406, 709, 871
Hpy188III	TCNNGA	5 cut(s)	113, 350, 798, 898, 940
Hpy8I	GTNNAC	4 cut(s)	257, 330, 535, 805
HpyAV	CCTTC	2 cut(s)	772, 1008
HpyCH4III	ACNGT	6 cut(s)	196, 365, 542, 683, 719, 769
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 386, 395
HpyF3I	CTNAG	2 cut(s)	324, 460
Hsp92II	CATG	5 cut(s)	172, 522, 842, 943, 1036
HspAI	GCGC	1 cut(s)	690
Ksp22I	TGATCA	2 cut(s)	574, 942
Kzo9I	GATC	8 cut(s)	352, 406, 454, 562, 574, 699, 709, 942
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	3 cut(s)	80, 151, 373
LweI	GCATC	4 cut(s)	220, 295, 426, 814
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	5 cut(s)	359, 524, 547, 677, 932
MalI	GATC	8 cut(s)	354, 408, 456, 564, 576, 701, 711, 944
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	8 cut(s)	352, 406, 454, 562, 574, 699, 709, 942
MboII	GAAGA	4 cut(s)	101, 206, 566, 986
MflI	RGATCY	1 cut(s)	699
MhlI	GDGCHC	2 cut(s)	332, 866
MluCI	AATT	8 cut(s)	187, 245, 345, 422, 504, 510, 852, 1009
MlyI	GAGTC	3 cut(s)	125, 181, 231
Mph1103I	ATGCAT	2 cut(s)	213, 520
MseI	TTAA	4 cut(s)	126, 450, 816, 846
MslI	CAYNNNNRTG	2 cut(s)	540, 625
MspR9I	CCNGG	2 cut(s)	597, 668
MvaI	CCWGG	2 cut(s)	597, 668
MvnI	CGCG	1 cut(s)	899
MwoI	GCNNNNNNNGC	3 cut(s)	314, 386, 395
NdeII	GATC	8 cut(s)	352, 406, 454, 562, 574, 699, 709, 942
NlaIII	CATG	5 cut(s)	172, 522, 842, 943, 1036
NlaIV	GGNNCC	4 cut(s)	49, 653, 665, 701
NmuCI	GTSAC	2 cut(s)	359, 547
NruI	TCGCGA	1 cut(s)	899
NsiI	ATGCAT	2 cut(s)	213, 520
OliI	CACNNNNGTG	2 cut(s)	540, 625
PagI	TCATGA	1 cut(s)	939
PfeI	GAWTC	2 cut(s)	901, 969
PkrI	GCNGC	4 cut(s)	10, 70, 166, 388
PleI	GAGTC	3 cut(s)	124, 180, 230
PpsI	GAGTC	3 cut(s)	124, 180, 230
PsiI	TTATAA	1 cut(s)	1016
Psp6I	CCWGG	2 cut(s)	595, 666
PspFI	CCCAGC	1 cut(s)	918
PspGI	CCWGG	2 cut(s)	595, 666
PspN4I	GGNNCC	4 cut(s)	49, 653, 665, 701
PspPI	GGNCC	2 cut(s)	48, 746
PsuI	RGATCY	1 cut(s)	699
RruI	TCGCGA	1 cut(s)	899
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	2 cut(s)	540, 625
SaqAI	TTAA	4 cut(s)	126, 450, 816, 846
SatI	GCNGC	4 cut(s)	9, 69, 165, 387
Sau3AI	GATC	8 cut(s)	352, 406, 454, 562, 574, 699, 709, 942
Sau96I	GGNCC	2 cut(s)	48, 746
SchI	GAGTC	3 cut(s)	125, 181, 231
ScrFI	CCNGG	2 cut(s)	597, 668
SduI	GDGCHC	2 cut(s)	332, 866
SetI	ASST	8 cut(s)	18, 96, 166, 823, 838, 852, 920, 1026
SfaNI	GCATC	4 cut(s)	220, 295, 426, 814
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	2 cut(s)	540, 625
Sse9I	AATT	8 cut(s)	187, 245, 345, 422, 504, 510, 852, 1009
SsiI	CCGC	3 cut(s)	8, 77, 728
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	595, 666
TaaI	ACNGT	6 cut(s)	196, 365, 542, 683, 719, 769
TaqI	TCGA	2 cut(s)	972, 1004
TasI	AATT	8 cut(s)	187, 245, 345, 422, 504, 510, 852, 1009
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	901, 969
Tru1I	TTAA	4 cut(s)	126, 450, 816, 846
Tru9I	TTAA	4 cut(s)	126, 450, 816, 846
TscAI	CASTG	6 cut(s)	199, 332, 368, 556, 688, 911
TseFI	GTSAC	2 cut(s)	359, 547
TseI	GCWGC	3 cut(s)	68, 164, 386
Tsp45I	GTSAC	2 cut(s)	359, 547
TspDTI	ATGAA	3 cut(s)	153, 928, 990
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	6 cut(s)	199, 332, 368, 556, 688, 911
VneI	GTGCAC	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	3 cut(s)	345, 504, 1009
XbaI	TCTAGA	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	516
XspI	CTAG	1 cut(s)	350
Zsp2I	ATGCAT	2 cut(s)	213, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.