Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0015138

Physical Location & Seq

Genomic Coordinates Forward (+)

26169081 .. 26173122

Gene Structure 4042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g28140.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTACTATAAGAATTCCGCAGCTGTATTTTGCTGCTGCGACTTGTCTGTTACTTTTAGGGGCCATCTCCAGCTTTCAACCCCAGTTGATTGCGGCCAAACCACTTTCCAAGACTAAGCTTCAGTCTCCTATTCTTCAGGACTCGATCATTAAACAGATAAATGAAAACCCCAAGGCTGGATGGGAAGCTGCCATGAATCCTCGATTCTCCAATTACACTGTTAGCCAGTTTATGCACCTCCTGGGAGTCAAACCAACACCCCAAAAGGATTTGCAGAGTTTTCCCATTAAAACTTATCCAAAATCTCTCAAGTTGCCAAATAATTTTGATGCCAGAACCGCTTGGCCTCAGTGCAACACCATTGGAAGAATATTAGATCAGGGTCACTGTGGCTCTTGTTGGGCTTTTGCTGCTGTTGAAGCACTATCAGATCGTTTTTGCGTCCGTTATGGCATGAATATCTCTCTGTCTGTTAATGATCTCCTAGCATGTTGTGGTTTCATGTGTGGAGCTGGTTGTAATGGGGGATATCCAATTTATGCTTGGCGGTACTTTATCCACCATGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATTCAACTGGCTGCTCGCACCCTGGTTGTGATCCTGCGTATCCGACTCCAAAGTGCGTTAAAAAATGTGTAGATGGGAACCAGATCTGGAAGAATTCAAAGCATTATAGTATCAGTGCGTATAGAATCAACTCTGATCCTCACAGTATCATGGCAGAGGTTTATAGGAATGGACCAGTTGAGGTTGCATTCACCGTTTATGAGGACTTTGCACACTATAAATCAGGAGTTTACAAACATGTTAAAGGTGATGTATTGGGAGGTCATGCTGTTAAGCTAATTGGATGGGGGACAACCAATGATGGAGAGGACTATTGGCTTCTGGCGAATCAGTGGAATATAAGCTGGGGTGATGATGGCTACTTCATCGATCAGAAGAGGAACAAACGAGTGTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Peptidase_C1 Propeptide_C1

Protein Analysis

334

Amino Acids

37.29

Weight (kDa)

8.44

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02305 AT4G01610 AT4G01610
fragaria_vesca	FvH4_1g25910
malus_domestica	MD17G1285700.v1.1
prunus_persica	Prupe.3G000200_v2.0.a1
pyrus_communis	pycom17g28140
rosa_chinensis	RchiOBHm_Chr3g0485051
rosa_laevigata	RLG00000023172
rosa_multiflora	Rmu_sc0006040.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397220
rosa_rugosa	Rorug03G0215600
rosa_samantha	Rh3AG265900 Rh3BG301500 Rh3CG299800 Rh3DG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	20, 95, 342, 550
AclWI	GGATC	2 cut(s)	626, 731
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	15, 694
AcuI	CTGAAG	3 cut(s)	107, 122, 600
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	838
AgsI	TTSAA	4 cut(s)	80, 422, 606, 699
AjnI	CCWGG	2 cut(s)	243, 622
AleI	CACNNNNGTG	1 cut(s)	567
AluBI	AGCT	7 cut(s)	25, 75, 121, 191, 515, 877, 945
AluI	AGCT	7 cut(s)	25, 75, 121, 191, 515, 877, 945
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	2 cut(s)	626, 731
AoxI	GGCC	3 cut(s)	63, 96, 347
ApeKI	GCWGC	6 cut(s)	22, 35, 38, 191, 413, 612
ApoI	RAATTY	2 cut(s)	15, 694
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
AspS9I	GGNCC	2 cut(s)	63, 773
AsuHPI	GGTGA	3 cut(s)	784, 860, 962
AvaII	GGWCC	1 cut(s)	773
BbvI	GCAGC	6 cut(s)	22, 25, 34, 178, 400, 599
BccI	CCATC	6 cut(s)	74, 177, 668, 879, 896, 950
BciT130I	CCWGG	2 cut(s)	245, 624
BciVI	GTATCC	1 cut(s)	651
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	651
BglII	AGATCT	1 cut(s)	684
BisI	GCNGC	7 cut(s)	23, 36, 39, 96, 192, 414, 613
BlsI	GCNGC	7 cut(s)	24, 37, 40, 97, 193, 415, 614
Bme1390I	CCNGG	2 cut(s)	245, 624
Bme18I	GGWCC	1 cut(s)	773
BmgT120I	GGNCC	2 cut(s)	63, 773
BmiI	GGNNCC	2 cut(s)	64, 680
BmrFI	CCNGG	2 cut(s)	245, 624
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	969
BsaJI	CCNNGG	4 cut(s)	174, 244, 565, 622
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	4 cut(s)	85, 229, 613, 776
BseBI	CCWGG	2 cut(s)	245, 624
BseCI	ATCGAT	1 cut(s)	969
BseDI	CCNNGG	4 cut(s)	174, 244, 565, 622
BseGI	GGATG	2 cut(s)	188, 890
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	4 cut(s)	85, 229, 613, 776
BseXI	GCAGC	6 cut(s)	22, 25, 34, 178, 400, 599
BseYI	CCCAGC	1 cut(s)	945
BshFI	GGCC	3 cut(s)	65, 98, 349
BshVI	ATCGAT	1 cut(s)	969
BslFI	GGGAC	1 cut(s)	904
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	904
BsmI	GAATGC	1 cut(s)	788
BsnI	GGCC	3 cut(s)	65, 98, 349
Bsp143I	GATC	8 cut(s)	147, 379, 433, 481, 631, 684, 736, 970
Bsp19I	CCATGG	1 cut(s)	565
BspACI	CCGC	4 cut(s)	20, 95, 342, 550
BspANI	GGCC	3 cut(s)	65, 98, 349
BspCNI	CTCAG	1 cut(s)	364
BspDI	ATCGAT	1 cut(s)	969
BspLI	GGNNCC	2 cut(s)	64, 680
BspPI	GGATC	2 cut(s)	626, 731
BsrI	ACTGG	4 cut(s)	85, 229, 613, 776
BssECI	CCNNGG	4 cut(s)	174, 244, 565, 622
BssMI	GATC	8 cut(s)	147, 379, 433, 481, 631, 684, 736, 970
BssT1I	CCWWGG	2 cut(s)	174, 565
Bst2UI	CCWGG	2 cut(s)	245, 624
Bst4CI	ACNGT	4 cut(s)	223, 392, 746, 796
Bst6I	CTCTTC	2 cut(s)	576, 971
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	2 cut(s)	117, 351
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	2 cut(s)	188, 890
BstKTI	GATC	8 cut(s)	150, 382, 436, 484, 634, 687, 739, 973
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	8 cut(s)	147, 379, 433, 481, 631, 684, 736, 970
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 413, 422
BstNI	CCWGG	2 cut(s)	245, 624
BstNSI	RCATGY	2 cut(s)	495, 842
BstSCI	CCNGG	2 cut(s)	243, 622
BstV1I	GCAGC	6 cut(s)	22, 25, 34, 178, 400, 599
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
Bsu15I	ATCGAT	1 cut(s)	969
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	3 cut(s)	65, 98, 349
BsuTUI	ATCGAT	1 cut(s)	969
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	188, 890
BtsIMutI	CAGTG	6 cut(s)	219, 359, 388, 576, 721, 938
Cac8I	GCNNGC	1 cut(s)	617
Cfr13I	GGNCC	2 cut(s)	63, 773
ClaI	ATCGAT	1 cut(s)	969
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	8 cut(s)	196, 457, 492, 505, 566, 751, 839, 866
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	2 cut(s)	117, 351
DpnI	GATC	8 cut(s)	149, 381, 435, 483, 633, 686, 738, 972
DpnII	GATC	8 cut(s)	147, 379, 433, 481, 631, 684, 736, 970
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	2 cut(s)	576, 971
EarI	CTCTTC	2 cut(s)	576, 971
Eco130I	CCWWGG	2 cut(s)	174, 565
Eco32I	GATATC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	773
Eco57I	CTGAAG	3 cut(s)	107, 122, 600
EcoRI	GAATTC	2 cut(s)	15, 694
EcoRII	CCWGG	2 cut(s)	243, 622
EcoRV	GATATC	1 cut(s)	533
EcoT14I	CCWWGG	2 cut(s)	174, 565
ErhI	CCWWGG	2 cut(s)	174, 565
FaeI	CATG	8 cut(s)	199, 460, 495, 508, 569, 754, 842, 869
FaqI	GGGAC	1 cut(s)	904
FatI	CATG	8 cut(s)	195, 456, 491, 504, 565, 750, 838, 865
Fnu4HI	GCNGC	7 cut(s)	23, 36, 39, 96, 192, 414, 613
FokI	GGATG	2 cut(s)	195, 897
Fsp4HI	GCNGC	7 cut(s)	23, 36, 39, 96, 192, 414, 613
FspBI	CTAG	1 cut(s)	488
GluI	GCNGC	7 cut(s)	23, 36, 39, 96, 192, 414, 613
GsaI	CCCAGC	1 cut(s)	949
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	65, 98, 349
HgaI	GACGC	1 cut(s)	433
Hin1II	CATG	8 cut(s)	199, 460, 495, 508, 569, 754, 842, 869
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	8 cut(s)	143, 199, 207, 249, 602, 646, 726, 928
HphI	GGTGA	3 cut(s)	784, 860, 962
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	4 cut(s)	433, 645, 736, 975
Hpy188III	TCNNGA	3 cut(s)	140, 688, 825
Hpy8I	GTNNAC	1 cut(s)	832
HpyCH4III	ACNGT	4 cut(s)	223, 392, 746, 796
HpyCH4V	TGCA	5 cut(s)	238, 277, 357, 788, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 413, 422
HpyF3I	CTNAG	2 cut(s)	117, 351
Hsp92II	CATG	8 cut(s)	199, 460, 495, 508, 569, 754, 842, 869
Kzo9I	GATC	8 cut(s)	147, 379, 433, 481, 631, 684, 736, 970
LmnI	GCTCC	1 cut(s)	512
Lsp1109I	GCAGC	6 cut(s)	22, 25, 34, 178, 400, 599
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	488
MaeIII	GTNAC	4 cut(s)	51, 386, 574, 587
MalI	GATC	8 cut(s)	149, 381, 435, 483, 633, 686, 738, 972
MboI	GATC	8 cut(s)	147, 379, 433, 481, 631, 684, 736, 970
MboII	GAAGA	5 cut(s)	128, 381, 593, 703, 988
MflI	RGATCY	1 cut(s)	684
MluCI	AATT	7 cut(s)	15, 214, 325, 537, 694, 879, 997
MlyI	GAGTC	3 cut(s)	137, 258, 640
MmeI	TCCRAC	1 cut(s)	668
MseI	TTAA	6 cut(s)	153, 291, 477, 660, 843, 873
MslI	CAYNNNNRTG	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	25
MspR9I	CCNGG	2 cut(s)	245, 624
Mva1269I	GAATGC	1 cut(s)	788
MvaI	CCWGG	2 cut(s)	245, 624
MwoI	GCNNNNNNNGC	3 cut(s)	341, 413, 422
NcoI	CCATGG	1 cut(s)	565
NdeII	GATC	8 cut(s)	147, 379, 433, 481, 631, 684, 736, 970
NlaIII	CATG	8 cut(s)	199, 460, 495, 508, 569, 754, 842, 869
NlaIV	GGNNCC	2 cut(s)	64, 680
NmuCI	GTSAC	3 cut(s)	386, 574, 587
NspI	RCATGY	2 cut(s)	495, 842
OliI	CACNNNNGTG	1 cut(s)	567
PciI	ACATGT	1 cut(s)	838
PctI	GAATGC	1 cut(s)	788
PfeI	GAWTC	5 cut(s)	199, 207, 602, 726, 928
PkrI	GCNGC	7 cut(s)	24, 37, 40, 97, 193, 415, 614
PleI	GAGTC	3 cut(s)	137, 257, 640
PpsI	GAGTC	3 cut(s)	137, 257, 640
PscI	ACATGT	1 cut(s)	838
Psp6I	CCWGG	2 cut(s)	243, 622
PspFI	CCCAGC	1 cut(s)	945
PspGI	CCWGG	2 cut(s)	243, 622
PspN4I	GGNNCC	2 cut(s)	64, 680
PspPI	GGNCC	2 cut(s)	63, 773
PsuI	RGATCY	1 cut(s)	684
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	6 cut(s)	153, 291, 477, 660, 843, 873
SatI	GCNGC	7 cut(s)	23, 36, 39, 96, 192, 414, 613
Sau3AI	GATC	8 cut(s)	147, 379, 433, 481, 631, 684, 736, 970
Sau96I	GGNCC	2 cut(s)	63, 773
SchI	GAGTC	3 cut(s)	137, 258, 640
ScrFI	CCNGG	2 cut(s)	245, 624
SfaNI	GCATC	1 cut(s)	322
SinI	GGWCC	1 cut(s)	773
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	7 cut(s)	15, 214, 325, 537, 694, 879, 997
SsiI	CCGC	4 cut(s)	20, 95, 342, 550
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	243, 622
StyI	CCWWGG	2 cut(s)	174, 565
TaaI	ACNGT	4 cut(s)	223, 392, 746, 796
TaqI	TCGA	3 cut(s)	146, 205, 969
TasI	AATT	7 cut(s)	15, 214, 325, 537, 694, 879, 997
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	5 cut(s)	199, 207, 602, 726, 928
Tru1I	TTAA	6 cut(s)	153, 291, 477, 660, 843, 873
Tru9I	TTAA	6 cut(s)	153, 291, 477, 660, 843, 873
TscAI	CASTG	6 cut(s)	226, 359, 395, 583, 721, 938
TseFI	GTSAC	3 cut(s)	386, 574, 587
TseI	GCWGC	6 cut(s)	22, 35, 38, 191, 413, 612
Tsp45I	GTSAC	3 cut(s)	386, 574, 587
TspDTI	ATGAA	5 cut(s)	180, 212, 473, 493, 955
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	6 cut(s)	226, 359, 395, 583, 721, 938
VpaK11BI	GGWCC	1 cut(s)	773
XapI	RAATTY	2 cut(s)	15, 694
XceI	RCATGY	2 cut(s)	495, 842
XcmI	CCANNNNNNNNNTGG	1 cut(s)	543
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.