AT1G02360

chitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005224
Physical Location & Seq
Reverse (-)
471883 .. 473336
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02360.1

Sequence Viewer

Length: 819 bp
ATGGCTCAACAACACTCTTTTCTCCTCTTATGCTTCTTCCTCTCAATCTCTTATTTACTATCTTCCGCCCAAACCGAAGCCACCTCAATCGAGAGATTAGTGCCAAGAGACCTCTACAACAAAATTTTCATCCACAAGGACAATACCGCTTGTCCCGCAAATGGTTTCTACACTTACGAATCATTTGTCCAAGCGACGAGGCGGTTTCCGAGATTCGGGAGCGTAGGAAGCCCCGTGACACAACGACTCGAAGTGGCTGCATTTTTGGCTCAGATTTCACACGAGACGACCGGAGGATGGGCAACGGCACCAGACGGACCGTACGCTTGGGGATTATGCTTTAAAGAAGAAGTGAGTCCACAAAGCACTTATTGTGATTCTTCTGATACACAGTGGCCTTGTTTCCCTAACAAGACTTATCAAGGAAGAGGTCCAATTCAACTATCGTGGAACTACAATTACGGACCGGCCGGTCGAGCCTTAGGATTCGACGGTCTAAGGAATCCAGAAACGGTGTCAAATAATTCAGTGATAGCTTTTCAAACAGCACTTTGGTTTTGGATGACGCCACAGAGTCCCAAACCTTCGTGCCATGACGTCATGATCGGAAAATACCGACCTACGGCGGCGGATTTGGCAGCTAACCGGACCGGCGGGTTTGGTTTAACCACAAATATAATAAATGGCGGTTTAGAGTGTGGGATTCCTGGAGACGGACGGGTCAATGACCGAATCGGGTTTTTTCAGAGATATACTGGGCTGTTTAAAGTAGCAACTGGGCCGAATTTGGACTGTGAAAATCAAAGGCCTTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_19

Protein Analysis

272

Amino Acids

30.14

Weight (kDa)

7.55

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 34 - 265 6.8e-102 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 471, 719
AatII GACGTC 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 307
AciI CCGC 8 cut(s) 66, 147, 156, 202, 626, 629, 654, 687
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 2 cut(s) 123, 784
AcyI GRCGYC 2 cut(s) 566, 597
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 5 cut(s) 161, 215, 297, 622, 713
AgsI TTSAA 2 cut(s) 440, 542
AjnI CCWGG 1 cut(s) 706
AluBI AGCT 2 cut(s) 536, 641
AluI AGCT 2 cut(s) 536, 641
Alw26I GTCTC 3 cut(s) 102, 278, 705
AoxI GGCC 4 cut(s) 395, 468, 779, 806
ApeKI GCWGC 2 cut(s) 257, 638
ApoI RAATTY 2 cut(s) 123, 784
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspS9I GGNCC 5 cut(s) 317, 431, 464, 648, 779
AvaII GGWCC 4 cut(s) 317, 431, 464, 648
AxyI CCTNAGG 1 cut(s) 481
BanI GGYRCC 1 cut(s) 307
BauI CACGAG 1 cut(s) 281
BbvI GCAGC 2 cut(s) 244, 650
BccI CCATC 1 cut(s) 291
BceAI ACGGC 2 cut(s) 321, 639
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 708
BcoDI GTCTC 3 cut(s) 102, 278, 705
BisI GCNGC 3 cut(s) 258, 627, 639
BlsI GCNGC 3 cut(s) 259, 628, 640
Bme1390I CCNGG 1 cut(s) 708
Bme18I GGWCC 4 cut(s) 317, 431, 464, 648
BmgT120I GGNCC 5 cut(s) 317, 431, 464, 648, 779
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 708
BmrI ACTGGG 2 cut(s) 765, 786
BmuI ACTGGG 2 cut(s) 765, 786
BpmI CTGGAG 1 cut(s) 729
BsaHI GRCGYC 2 cut(s) 566, 597
BsaI GGTCTC 1 cut(s) 102
BsaWI WCCGGW 2 cut(s) 290, 645
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 215, 297, 622, 713
Bse118I RCCGGY 3 cut(s) 466, 470, 650
Bse1I ACTGG 2 cut(s) 760, 781
Bse21I CCTNAGG 1 cut(s) 481
BseBI CCWGG 1 cut(s) 708
BseGI GGATG 3 cut(s) 129, 302, 567
BseLI CCNNNNNNNGG 5 cut(s) 161, 215, 297, 622, 713
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 2 cut(s) 760, 781
BseRI GAGGAG 1 cut(s) 14
BseX3I CGGCCG 1 cut(s) 468
BseXI GCAGC 2 cut(s) 244, 650
Bsh1285I CGRYCG 3 cut(s) 291, 471, 475
BshFI GGCC 4 cut(s) 397, 470, 781, 808
BshNI GGYRCC 1 cut(s) 307
BsiEI CGRYCG 3 cut(s) 291, 471, 475
BsiSI CCGG 5 cut(s) 291, 467, 471, 646, 651
BsiWI CGTACG 1 cut(s) 321
BslFI GGGAC 2 cut(s) 138, 561
BslI CCNNNNNNNGG 5 cut(s) 161, 215, 297, 622, 713
BsmAI GTCTC 3 cut(s) 102, 278, 705
BsmBI CGTCTC 2 cut(s) 278, 705
BsmFI GGGAC 2 cut(s) 138, 561
BsnI GGCC 4 cut(s) 397, 470, 781, 808
Bso31I GGTCTC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 603
BspACI CCGC 8 cut(s) 66, 147, 156, 202, 626, 629, 654, 687
BspANI GGCC 4 cut(s) 397, 470, 781, 808
BspCNI CTCAG 1 cut(s) 283
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 3 cut(s) 466, 470, 650
BsrI ACTGG 2 cut(s) 760, 781
BssAI RCCGGY 3 cut(s) 466, 470, 650
BssMI GATC 1 cut(s) 603
BssNI GRCGYC 2 cut(s) 566, 597
BssSI CACGAG 1 cut(s) 281
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 5 cut(s) 321, 393, 494, 514, 794
Bst6I CTCTTC 1 cut(s) 421
BstACI GRCGYC 2 cut(s) 566, 597
BstDEI CTNAG 3 cut(s) 270, 481, 497
BstF5I GGATG 3 cut(s) 129, 302, 567
BstKTI GATC 1 cut(s) 606
BstMAI GTCTC 3 cut(s) 102, 278, 705
BstMBI GATC 1 cut(s) 603
BstMCI CGRYCG 3 cut(s) 291, 471, 475
BstMWI GCNNNNNNNGC 5 cut(s) 155, 228, 266, 476, 635
BstNI CCWGG 1 cut(s) 708
BstSCI CCNGG 1 cut(s) 706
BstV1I GCAGC 2 cut(s) 244, 650
BstZI CGGCCG 1 cut(s) 468
Bsu36I CCTNAGG 1 cut(s) 481
BsuRI GGCC 4 cut(s) 397, 470, 781, 808
BtsCI GGATG 3 cut(s) 129, 302, 567
BtsIMutI CAGTG 2 cut(s) 398, 534
CciI TCATGA 1 cut(s) 600
Cfr10I RCCGGY 3 cut(s) 466, 470, 650
Cfr13I GGNCC 5 cut(s) 317, 431, 464, 648, 779
CpoI CGGWCCG 3 cut(s) 317, 464, 648
CseI GACGC 1 cut(s) 574
Csp6I GTAC 1 cut(s) 322
CspCI CAANNNNNGTGG 2 cut(s) 428, 463
CspI CGGWCCG 3 cut(s) 317, 464, 648
CviAII CATG 2 cut(s) 593, 601
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 3 cut(s) 270, 481, 497
DpnI GATC 1 cut(s) 605
DpnII GATC 1 cut(s) 603
DraI TTTAAA 2 cut(s) 343, 766
DrdI GACNNNNNNGTC 2 cut(s) 471, 719
DseDI GACNNNNNNGTC 2 cut(s) 471, 719
EaeI YGGCCR 1 cut(s) 468
EagI CGGCCG 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 421
EciI GGCGGA 2 cut(s) 55, 644
EclXI CGGCCG 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 808
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 4 cut(s) 317, 431, 464, 648
Eco52I CGGCCG 1 cut(s) 468
Eco81I CCTNAGG 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 706
Esp3I CGTCTC 2 cut(s) 278, 705
FaeI CATG 2 cut(s) 596, 604
FaiI YATR 7 cut(s) 31, 337, 594, 602, 677, 753, 813
FaqI GGGAC 2 cut(s) 138, 561
FatI CATG 2 cut(s) 592, 600
FauI CCCGC 2 cut(s) 163, 647
Fnu4HI GCNGC 3 cut(s) 258, 627, 639
FokI GGATG 3 cut(s) 116, 309, 574
Fsp4HI GCNGC 3 cut(s) 258, 627, 639
GluI GCNGC 3 cut(s) 258, 627, 639
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 4 cut(s) 397, 470, 781, 808
HapII CCGG 5 cut(s) 291, 467, 471, 646, 651
HgaI GACGC 1 cut(s) 574
Hin1I GRCGYC 2 cut(s) 566, 597
Hin1II CATG 2 cut(s) 596, 604
HpaII CCGG 5 cut(s) 291, 467, 471, 646, 651
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 5 cut(s) 210, 273, 385, 608, 747
Hpy188III TCNNGA 4 cut(s) 91, 217, 506, 601
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 2 cut(s) 199, 494
HpyAV CCTTC 1 cut(s) 594
HpyCH4III ACNGT 5 cut(s) 321, 393, 494, 514, 794
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 228, 266, 476, 635
HpyF3I CTNAG 3 cut(s) 270, 481, 497
HpySE526I ACGT 1 cut(s) 597
Hsp92I GRCGYC 2 cut(s) 566, 597
Hsp92II CATG 2 cut(s) 596, 604
Kzo9I GATC 1 cut(s) 603
LmnI GCTCC 1 cut(s) 219
Lsp1109I GCAGC 2 cut(s) 244, 650
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 605
MboI GATC 1 cut(s) 603
MboII GAAGA 5 cut(s) 28, 54, 359, 372, 438
MluCI AATT 5 cut(s) 123, 435, 457, 523, 784
MlyI GAGTC 3 cut(s) 240, 364, 583
MnlI CCTC 7 cut(s) 35, 50, 94, 122, 192, 287, 422
MseI TTAA 4 cut(s) 342, 665, 765, 817
MspI CCGG 5 cut(s) 291, 467, 471, 646, 651
MspR9I CCNGG 1 cut(s) 708
MvaI CCWGG 1 cut(s) 708
MwoI GCNNNNNNNGC 5 cut(s) 155, 228, 266, 476, 635
NdeII GATC 1 cut(s) 603
NlaIII CATG 2 cut(s) 596, 604
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 235
PagI TCATGA 1 cut(s) 600
PceI AGGCCT 1 cut(s) 808
PfeI GAWTC 7 cut(s) 179, 213, 377, 486, 502, 703, 732
Pfl23II CGTACG 1 cut(s) 321
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 3 cut(s) 259, 628, 640
PleI GAGTC 3 cut(s) 240, 363, 582
PpsI GAGTC 3 cut(s) 240, 363, 582
Psp6I CCWGG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 706
PspLI CGTACG 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 5 cut(s) 317, 431, 464, 648, 779
PsrI GAACNNNNNNTAC 2 cut(s) 443, 475
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
Rsr2I CGGWCCG 3 cut(s) 317, 464, 648
RsrII CGGWCCG 3 cut(s) 317, 464, 648
SaqAI TTAA 4 cut(s) 342, 665, 765, 817
SatI GCNGC 3 cut(s) 258, 627, 639
Sau3AI GATC 1 cut(s) 603
Sau96I GGNCC 5 cut(s) 317, 431, 464, 648, 779
SchI GAGTC 3 cut(s) 240, 364, 583
ScrFI CCNGG 1 cut(s) 708
SetI ASST 8 cut(s) 86, 114, 433, 538, 586, 600, 622, 643
SinI GGWCC 4 cut(s) 317, 431, 464, 648
Sse9I AATT 5 cut(s) 123, 435, 457, 523, 784
SseBI AGGCCT 1 cut(s) 808
SsiI CCGC 8 cut(s) 66, 147, 156, 202, 626, 629, 654, 687
StuI AGGCCT 1 cut(s) 808
StyD4I CCNGG 1 cut(s) 706
TaaI ACNGT 5 cut(s) 321, 393, 494, 514, 794
TaiI ACGT 1 cut(s) 600
TaqI TCGA 4 cut(s) 90, 249, 475, 489
TaqII GACCGA 1 cut(s) 744
TasI AATT 5 cut(s) 123, 435, 457, 523, 784
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 7 cut(s) 179, 213, 377, 486, 502, 703, 732
Tru1I TTAA 4 cut(s) 342, 665, 765, 817
Tru9I TTAA 4 cut(s) 342, 665, 765, 817
TscAI CASTG 2 cut(s) 398, 534
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 2 cut(s) 257, 638
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 118
TspGWI ACGGA 3 cut(s) 330, 477, 729
TspRI CASTG 2 cut(s) 398, 534
VpaK11BI GGWCC 4 cut(s) 317, 431, 464, 648
XapI RAATTY 2 cut(s) 123, 784
ZraI GACGTC 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.