Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005224

Physical Location & Seq

Genomic Coordinates Reverse (-)

154455 .. 155501

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G002100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCAATAATCAGCTGGTTGTCATCTTCCATCTTCCTCTCATTATTCACCTTGTTTTGCCTTAGTATTAGTAATGCATCATGGGGTGCTGAGGCTGCTCGCGAATCATGTCGTCCCATCTCGTCTTTGATCAACAAAGACCTATTCCACTTCATGTTTCTACACAAGGACGACGCCGCATGCCCTGCCAAAGACTTCTACGCCTACAACTCTTTCATCCAAGCCTCCAAATCCTTCCCTGGATTTGGCACCACCGGAAGCTTAACCACTCGCAAGCGCGAAATTGCTGCCTTCCTTGCTCAGATCTCTCACGAGACTTCAGGTGGGTGGGCTACTGCCCCTGATGGACCCTATGCATGGGGTTTGTGCTATAAAGAGGAAATCAATCCCCAAAGCGACTACTGTGACTCCACCAACAAGGAATGGCCCTGCTATCCGGGCAAATCTTACAAAGGAAGAGGCCCTATTCAACTATCTTGGAACTTTAATTATGGCCCGGCCGGCAAGGCATTGGGGTTTGATGGGCTTAAGAATCCAGAAATAGTGGCGAACAATTCCATGATCGCGTTGAAAACGGCTCTGTGGTTCTGGATGACTGAGCGAAAGCCGAAGCCGTCTTGTCACGATGTCATGGTTGGACGATATATTCCCACAGAAGCTGATGTGGCAGCCAACCGGACGGCCGGATTTGGGGTGGTGACTAACATAATCAACGGTGGCCTTGAGTGCGGCATATCAAACGACGCACGAGTGAATGATCGGATTGGTTATTTCAAAAGATATGCTCAGCTGTTGAATGTGGATACTGGATCTAACTTAGACTGTGCAAATCAGAAGTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_19

Protein Analysis

282

Amino Acids

30.99

Weight (kDa)

8.02

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02360 AT1G02360 AT1G02360
fragaria_vesca	FvH4_1g26180 FvH4_5g27250 FvH4_5g27250
malus_domestica	MD00G1016200.v1.1 MD09G1290900.v1.1
prunus_persica	Prupe.3G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0485671 RchiOBHm_Chr7g0218441
rosa_laevigata	RLG00000002156 RLG00000002373 RLG00000023134
rosa_multiflora	Rmu_sc0017693.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240970 Rroxscaffold_6G00396530
rosa_rugosa	Rorug03G0220700 Rorug07G0177000
rosa_samantha	Rh3AG269600 Rh3BG305600 Rh3CG303700 Rh3DG299900 Rh7AG318500 Rh7BG310400 Rh7CG335400 Rh7DG317500
rosa_wichuraiana	Rw3G024030 Rw7G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	3 cut(s)	102, 279, 566
AciI	CCGC	2 cut(s)	177, 729
AclWI	GGATC	1 cut(s)	817
AcoI	YGGCCR	2 cut(s)	498, 681
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	174
AfiI	CCNNNNNNNGG	3 cut(s)	245, 357, 690
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	4 cut(s)	470, 571, 775, 796
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	4 cut(s)	15, 261, 659, 790
AluI	AGCT	4 cut(s)	15, 261, 659, 790
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	817
AlwNI	CAGNNNCTG	1 cut(s)	659
AoxI	GGCC	6 cut(s)	425, 460, 493, 498, 681, 718
ApeKI	GCWGC	3 cut(s)	95, 287, 668
ArsI	GACNNNNNNTTYG	1 cut(s)	821
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	4 cut(s)	347, 426, 461, 494
AsuC2I	CCSGG	2 cut(s)	438, 497
AsuHPI	GGTGA	2 cut(s)	40, 709
AvaII	GGWCC	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	2 cut(s)	311, 747
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	82, 274, 680
BccI	CCATC	4 cut(s)	38, 125, 338, 515
BceAI	ACGGC	3 cut(s)	591, 598, 696
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	1 cut(s)	240
BciVI	GTATCC	1 cut(s)	796
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	2 cut(s)	438, 497
BcoDI	GTCTC	1 cut(s)	308
BfrI	CTTAAG	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	796
BglI	GCCNNNNNGGC	2 cut(s)	501, 506
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	5 cut(s)	96, 177, 288, 669, 730
BlpI	GCTNAGC	1 cut(s)	786
BlsI	GCNGC	5 cut(s)	97, 178, 289, 670, 731
Bme1390I	CCNGG	3 cut(s)	240, 438, 497
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	4 cut(s)	347, 426, 461, 494
BmiI	GGNNCC	2 cut(s)	250, 349
BmrFI	CCNGG	3 cut(s)	240, 438, 497
BmsI	GCATC	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	786
BpuEI	CTTGAG	1 cut(s)	743
BpuMI	CCSGG	2 cut(s)	438, 497
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	2 cut(s)	254, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 357, 690
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	811
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	216, 597
BseLI	CCNNNNNNNGG	3 cut(s)	245, 357, 690
BseMII	CTCAG	4 cut(s)	81, 314, 588, 800
BseNI	ACTGG	1 cut(s)	811
BseX3I	CGGCCG	2 cut(s)	498, 681
BseXI	GCAGC	3 cut(s)	82, 274, 680
Bsh1236I	CGCG	3 cut(s)	102, 279, 566
Bsh1285I	CGRYCG	2 cut(s)	501, 684
BshFI	GGCC	6 cut(s)	427, 462, 495, 500, 683, 720
BshNI	GGYRCC	1 cut(s)	248
BsiEI	CGRYCG	2 cut(s)	501, 684
BsiSI	CCGG	6 cut(s)	255, 437, 497, 501, 676, 684
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	3 cut(s)	245, 357, 690
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	6 cut(s)	427, 462, 495, 500, 683, 720
Bsp143I	GATC	5 cut(s)	129, 303, 561, 757, 809
Bsp1720I	GCTNAGC	1 cut(s)	786
Bsp68I	TCGCGA	1 cut(s)	102
BspACI	CCGC	2 cut(s)	177, 729
BspANI	GGCC	6 cut(s)	427, 462, 495, 500, 683, 720
BspCNI	CTCAG	4 cut(s)	82, 313, 589, 799
BspFNI	CGCG	3 cut(s)	102, 279, 566
BspLI	GGNNCC	2 cut(s)	250, 349
BspPI	GGATC	1 cut(s)	817
BspT107I	GGYRCC	1 cut(s)	248
BspTI	CTTAAG	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	811
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	5 cut(s)	129, 303, 561, 757, 809
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	2 cut(s)	311, 747
Bst2BI	CACGAG	2 cut(s)	311, 747
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	404, 716, 824
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	4 cut(s)	100, 181, 275, 502
BstDEI	CTNAG	6 cut(s)	62, 90, 300, 597, 786, 817
BstF5I	GGATG	2 cut(s)	216, 597
BstFNI	CGCG	3 cut(s)	102, 279, 566
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	5 cut(s)	132, 306, 564, 760, 812
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	5 cut(s)	129, 303, 561, 757, 809
BstMCI	CGRYCG	2 cut(s)	501, 684
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 185, 296, 438, 501, 506, 665, 726
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	3 cut(s)	238, 436, 495
BstUI	CGCG	3 cut(s)	102, 279, 566
BstV1I	GCAGC	3 cut(s)	82, 274, 680
BstX2I	RGATCY	2 cut(s)	303, 809
BstYI	RGATCY	2 cut(s)	303, 809
BstZI	CGGCCG	2 cut(s)	498, 681
BsuI	GTATCC	1 cut(s)	796
BsuRI	GGCC	6 cut(s)	427, 462, 495, 500, 683, 720
BtsCI	GGATG	2 cut(s)	216, 597
BtuMI	TCGCGA	1 cut(s)	102
Cac8I	GCNNGC	4 cut(s)	100, 181, 275, 502
CaiI	CAGNNNCTG	1 cut(s)	659
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	4 cut(s)	347, 426, 461, 494
CseI	GACGC	2 cut(s)	182, 752
CviAII	CATG	7 cut(s)	81, 108, 154, 180, 357, 559, 631
DdeI	CTNAG	6 cut(s)	62, 90, 300, 597, 786, 817
DpnI	GATC	5 cut(s)	131, 305, 563, 759, 811
DpnII	GATC	5 cut(s)	129, 303, 561, 757, 809
EaeI	YGGCCR	2 cut(s)	498, 681
EagI	CGGCCG	2 cut(s)	498, 681
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EclXI	CGGCCG	2 cut(s)	498, 681
Eco47I	GGWCC	1 cut(s)	347
Eco52I	CGGCCG	2 cut(s)	498, 681
Eco57I	CTGAAG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	238
EcoT22I	ATGCAT	2 cut(s)	79, 358
FaeI	CATG	7 cut(s)	84, 111, 157, 183, 360, 562, 634
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	7 cut(s)	80, 107, 153, 179, 356, 558, 630
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	96, 177, 288, 669, 730
FokI	GGATG	2 cut(s)	203, 604
Fsp4HI	GCNGC	5 cut(s)	96, 177, 288, 669, 730
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	5 cut(s)	96, 177, 288, 669, 730
HaeIII	GGCC	6 cut(s)	427, 462, 495, 500, 683, 720
HapII	CCGG	6 cut(s)	255, 437, 497, 501, 676, 684
HgaI	GACGC	2 cut(s)	182, 752
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	7 cut(s)	84, 111, 157, 183, 360, 562, 634
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	3 cut(s)	104, 407, 532
HpaII	CCGG	6 cut(s)	255, 437, 497, 501, 676, 684
HphI	GGTGA	2 cut(s)	40, 709
Hpy188I	TCNGA	3 cut(s)	303, 762, 834
Hpy188III	TCNNGA	5 cut(s)	101, 311, 536, 589, 623
Hpy99I	CGWCG	2 cut(s)	176, 746
HpyAV	CCTTC	2 cut(s)	244, 301
HpyCH4III	ACNGT	3 cut(s)	404, 716, 824
HpyCH4V	TGCA	3 cut(s)	77, 356, 827
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 185, 296, 438, 501, 506, 665, 726
HpyF3I	CTNAG	6 cut(s)	62, 90, 300, 597, 786, 817
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	7 cut(s)	84, 111, 157, 183, 360, 562, 634
HspAI	GCGC	1 cut(s)	277
KroI	GCCGGC	1 cut(s)	500
KroNI	GCCGGC	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	5 cut(s)	129, 303, 561, 757, 809
Lsp1109I	GCAGC	3 cut(s)	82, 274, 680
LweI	GCATC	1 cut(s)	86
MaeIII	GTNAC	3 cut(s)	404, 620, 697
MalI	GATC	5 cut(s)	131, 305, 563, 759, 811
MboI	GATC	5 cut(s)	129, 303, 561, 757, 809
MboII	GAAGA	3 cut(s)	18, 25, 468
MflI	RGATCY	2 cut(s)	303, 809
MluCI	AATT	3 cut(s)	282, 487, 553
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	5 cut(s)	47, 85, 235, 370, 452
Mph1103I	ATGCAT	2 cut(s)	79, 358
MroNI	GCCGGC	1 cut(s)	500
MseI	TTAA	4 cut(s)	263, 486, 528, 844
MspA1I	CMGCKG	2 cut(s)	15, 790
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	6 cut(s)	255, 437, 497, 501, 676, 684
MspR9I	CCNGG	3 cut(s)	240, 438, 497
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	3 cut(s)	102, 279, 566
MwoI	GCNNNNNNNGC	8 cut(s)	95, 185, 296, 438, 501, 506, 665, 726
NaeI	GCCGGC	1 cut(s)	502
NciI	CCSGG	2 cut(s)	438, 497
NdeII	GATC	5 cut(s)	129, 303, 561, 757, 809
NgoMIV	GCCGGC	1 cut(s)	500
NlaIII	CATG	7 cut(s)	84, 111, 157, 183, 360, 562, 634
NlaIV	GGNNCC	2 cut(s)	250, 349
NmuCI	GTSAC	3 cut(s)	404, 620, 697
NruI	TCGCGA	1 cut(s)	102
NsiI	ATGCAT	2 cut(s)	79, 358
NspI	RCATGY	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	104, 532
PkrI	GCNGC	5 cut(s)	97, 178, 289, 670, 731
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	250, 349
PspPI	GGNCC	4 cut(s)	347, 426, 461, 494
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	2 cut(s)	303, 809
PvuII	CAGCTG	2 cut(s)	15, 790
RruI	TCGCGA	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	263, 486, 528, 844
SatI	GCNGC	5 cut(s)	96, 177, 288, 669, 730
Sau3AI	GATC	5 cut(s)	129, 303, 561, 757, 809
Sau96I	GGNCC	4 cut(s)	347, 426, 461, 494
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	3 cut(s)	240, 438, 497
SetI	ASST	7 cut(s)	17, 53, 144, 263, 325, 661, 792
SfaNI	GCATC	1 cut(s)	86
SinI	GGWCC	1 cut(s)	347
SmlI	CTYRAG	2 cut(s)	527, 722
SmoI	CTYRAG	2 cut(s)	527, 722
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	3 cut(s)	282, 487, 553
SsiI	CCGC	2 cut(s)	177, 729
StyD4I	CCNGG	3 cut(s)	238, 436, 495
TaaI	ACNGT	3 cut(s)	404, 716, 824
TasI	AATT	3 cut(s)	282, 487, 553
TauI	GCSGC	2 cut(s)	179, 732
TfiI	GAWTC	2 cut(s)	104, 532
Tru1I	TTAA	4 cut(s)	263, 486, 528, 844
Tru9I	TTAA	4 cut(s)	263, 486, 528, 844
TseFI	GTSAC	3 cut(s)	404, 620, 697
TseI	GCWGC	3 cut(s)	95, 287, 668
Tsp45I	GTSAC	3 cut(s)	404, 620, 697
TspDTI	ATGAA	2 cut(s)	142, 205
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	347
XceI	RCATGY	1 cut(s)	183
Zsp2I	ATGCAT	2 cut(s)	79, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.