Rh7CG335400

chitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005224
Physical Location & Seq
Forward (+)
37324890 .. 37326542
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG335400.1

Sequence Viewer

Length: 828 bp
ATGGCTGCGGTCTTGCTGTCATCTTCAGCCTTCTTCTTCTTCTTCCTCACTACCATGTTTCTTTTCTCCATCTCATCATGGGAAGTTGAGGCTCATCCAGTATCTACTTTGATCAACGAAAAGCTTTACAACAACTTGTTTCTACACAAGGACGACACAGCATGCCCTGCAAATGATTTCTACACCTATCGCTCCTTCATCGAGGCAACCAAATACTTTCCGAGATTCGGCACCACCGGAAGTCTAGCCACTCGAAAGCGTGAAATTGCAGCATTTCTTGCTCAGATCTCTCACGAGACCACAGGCGGGTGGGCTACAGCGCCCGACGGACCATACTCTTGGGGTTTGTGCTTTAAAGAGGAAGTCAATCCGGGAAGCAACTATTGCGACAGCACCAACAAGGAGTGGCCATGCTATCCTGGAAAATCTTACAAAGGAAGAGGACCAATTCAACTATCTTGGAACTATAATTATGGTCAGGCAGGCAAGGCATTAAGGTTTGATGGACTAAAAAATCCAGAAGTAGTAGCAAACAATTCCTTAATAGCTTTCAAAACAGCTATATGGTTCTGGATGACTGAGCAAAAGCCGAAGCCCTCTTGTCACAATGTCATGGTGGGTCGATATGTGCTCACGCAAGCTGACATGGCTGCTAATAGGACTGTCGGATTTGGGATGGTGACGAACATCATCAACGGTGGACTTGAGTGTGGAATAGGCAGCGATGCACGAGTGAATGATCGAATTGGATATTTCAAAAGATATGCTAGTCTGTTTGGTGTTCCAACAGGACCAAATTTAGACTGTGAAAATCAAAAGTCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_19

Protein Analysis

275

Amino Acids

30.76

Weight (kDa)

8.39

Isoelectric Point (pI)

29.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 38 - 269 7.6e-106 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AciI CCGC 2 cut(s) 8, 306
AcoI YGGCCR 1 cut(s) 407
AcsI RAATTY 1 cut(s) 796
AcuI CTGAAG 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 227, 306
AgsI TTSAA 3 cut(s) 452, 553, 757
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 4 cut(s) 124, 548, 560, 641
AluI AGCT 4 cut(s) 124, 548, 560, 641
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 1 cut(s) 290
AoxI GGCC 1 cut(s) 407
ApeKI GCWGC 4 cut(s) 5, 269, 650, 720
ApoI RAATTY 1 cut(s) 796
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 3 cut(s) 329, 443, 791
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 691
AvaII GGWCC 3 cut(s) 329, 443, 791
BalI TGGCCA 1 cut(s) 409
BanI GGYRCC 1 cut(s) 230
BauI CACGAG 2 cut(s) 293, 729
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 3 cut(s) 281, 637, 732
BccI CCATC 3 cut(s) 77, 497, 670
BciT130I CCWGG 1 cut(s) 420
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 2 cut(s) 245, 768
BfmI CTRYAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 323
BglII AGATCT 1 cut(s) 285
BisI GCNGC 4 cut(s) 6, 270, 651, 721
BlsI GCNGC 4 cut(s) 7, 271, 652, 722
Bme1390I CCNGG 2 cut(s) 372, 420
Bme18I GGWCC 3 cut(s) 329, 443, 791
BmgT120I GGNCC 3 cut(s) 329, 443, 791
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 372, 420
BmsI GCATC 1 cut(s) 715
BpuEI CTTGAG 1 cut(s) 725
BpuMI CCSGG 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 290
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 306
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 420
BseGI GGATG 3 cut(s) 94, 579, 681
BseLI CCNNNNNNNGG 2 cut(s) 227, 306
BseMII CTCAG 2 cut(s) 296, 570
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 3 cut(s) 281, 637, 732
BshFI GGCC 1 cut(s) 409
BshNI GGYRCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 633
BsiSI CCGG 2 cut(s) 237, 371
BslI CCNNNNNNNGG 2 cut(s) 227, 306
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 1 cut(s) 409
Bso31I GGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 3 cut(s) 111, 285, 739
BspACI CCGC 2 cut(s) 8, 306
BspANI GGCC 1 cut(s) 409
BspCNI CTCAG 2 cut(s) 295, 571
BspLI GGNNCC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 290
BsrI ACTGG 1 cut(s) 98
BssMI GATC 3 cut(s) 111, 285, 739
BssSI CACGAG 2 cut(s) 293, 729
Bst2BI CACGAG 2 cut(s) 293, 729
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 3 cut(s) 664, 698, 806
Bst6I CTCTTC 1 cut(s) 433
BstAPI GCANNNNNTGC 3 cut(s) 167, 278, 384
BstC8I GCNNGC 3 cut(s) 163, 484, 639
BstDEI CTNAG 2 cut(s) 282, 579
BstF5I GGATG 3 cut(s) 94, 579, 681
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 3 cut(s) 114, 288, 742
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 3 cut(s) 111, 285, 739
BstMWI GCNNNNNNNGC 5 cut(s) 167, 278, 384, 488, 647
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 2 cut(s) 370, 418
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 3 cut(s) 281, 637, 732
BstX2I RGATCY 1 cut(s) 285
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 1 cut(s) 409
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 3 cut(s) 94, 579, 681
Cac8I GCNNGC 3 cut(s) 163, 484, 639
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 3 cut(s) 329, 443, 791
CviAII CATG 6 cut(s) 55, 78, 162, 411, 613, 646
DdeI CTNAG 2 cut(s) 282, 579
DpnI GATC 3 cut(s) 113, 287, 741
DpnII GATC 3 cut(s) 111, 285, 739
DraI TTTAAA 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 290
Eco47I GGWCC 3 cut(s) 329, 443, 791
Eco57I CTGAAG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 418
FaeI CATG 6 cut(s) 58, 81, 165, 414, 616, 649
FatI CATG 6 cut(s) 54, 77, 161, 410, 612, 645
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 4 cut(s) 6, 270, 651, 721
FokI GGATG 3 cut(s) 81, 586, 688
Fsp4HI GCNGC 4 cut(s) 6, 270, 651, 721
FspBI CTAG 2 cut(s) 245, 768
GlaI GCGC 1 cut(s) 321
GluI GCNGC 4 cut(s) 6, 270, 651, 721
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 1 cut(s) 409
HapII CCGG 2 cut(s) 237, 371
HhaI GCGC 1 cut(s) 322
Hin1II CATG 6 cut(s) 58, 81, 165, 414, 616, 649
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 1 cut(s) 225
HpaII CCGG 2 cut(s) 237, 371
HphI GGTGA 1 cut(s) 691
Hpy166II GTNNAC 1 cut(s) 701
Hpy188I TCNGA 3 cut(s) 222, 285, 668
Hpy188III TCNNGA 3 cut(s) 293, 518, 571
Hpy8I GTNNAC 1 cut(s) 701
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 40, 205
HpyCH4III ACNGT 3 cut(s) 664, 698, 806
HpyCH4V TGCA 3 cut(s) 170, 269, 728
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 278, 384, 488, 647
HpyF3I CTNAG 2 cut(s) 282, 579
Hsp92II CATG 6 cut(s) 58, 81, 165, 414, 616, 649
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 3 cut(s) 111, 285, 739
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 3 cut(s) 281, 637, 732
LweI GCATC 1 cut(s) 715
MaeI CTAG 2 cut(s) 245, 768
MaeIII GTNAC 2 cut(s) 602, 679
MalI GATC 3 cut(s) 113, 287, 741
MboI GATC 3 cut(s) 111, 285, 739
MboII GAAGA 6 cut(s) 15, 25, 28, 31, 34, 450
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 633
MlsI TGGCCA 1 cut(s) 409
MluCI AATT 6 cut(s) 264, 447, 469, 535, 744, 796
MluNI TGGCCA 1 cut(s) 409
MmeI TCCRAC 2 cut(s) 646, 809
MnlI CCTC 6 cut(s) 56, 82, 196, 352, 434, 607
Mox20I TGGCCA 1 cut(s) 409
MscI TGGCCA 1 cut(s) 409
MseI TTAA 4 cut(s) 354, 494, 542, 826
MslI CAYNNNNRTG 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 409
MspI CCGG 2 cut(s) 237, 371
MspR9I CCNGG 2 cut(s) 372, 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 5 cut(s) 167, 278, 384, 488, 647
NciI CCSGG 1 cut(s) 372
NdeII GATC 3 cut(s) 111, 285, 739
NlaIII CATG 6 cut(s) 58, 81, 165, 414, 616, 649
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 602, 679
NspI RCATGY 1 cut(s) 165
PaeI GCATGC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 225
PfoI TCCNGGA 2 cut(s) 370, 418
PkrI GCNGC 4 cut(s) 7, 271, 652, 722
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 3 cut(s) 329, 443, 791
PsuI RGATCY 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 4 cut(s) 354, 494, 542, 826
SatI GCNGC 4 cut(s) 6, 270, 651, 721
Sau3AI GATC 3 cut(s) 111, 285, 739
Sau96I GGNCC 3 cut(s) 329, 443, 791
ScrFI CCNGG 2 cut(s) 372, 420
SduI GDGCHC 1 cut(s) 633
SetI ASST 6 cut(s) 126, 188, 500, 550, 562, 643
SfaNI GCATC 1 cut(s) 715
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 3 cut(s) 329, 443, 791
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
SphI GCATGC 1 cut(s) 165
Sse9I AATT 6 cut(s) 264, 447, 469, 535, 744, 796
SsiI CCGC 2 cut(s) 8, 306
SspMI CTAG 2 cut(s) 245, 768
StyD4I CCNGG 2 cut(s) 370, 418
TaaI ACNGT 3 cut(s) 664, 698, 806
TaqI TCGA 4 cut(s) 201, 253, 622, 742
TasI AATT 6 cut(s) 264, 447, 469, 535, 744, 796
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 4 cut(s) 354, 494, 542, 826
Tru9I TTAA 4 cut(s) 354, 494, 542, 826
TseFI GTSAC 2 cut(s) 602, 679
TseI GCWGC 4 cut(s) 5, 269, 650, 720
Tsp45I GTSAC 2 cut(s) 602, 679
TspDTI ATGAA 1 cut(s) 187
TspGWI ACGGA 1 cut(s) 342
VpaK11BI GGWCC 3 cut(s) 329, 443, 791
XapI RAATTY 1 cut(s) 796
XceI RCATGY 1 cut(s) 165
XspI CTAG 2 cut(s) 245, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.