MD09G1290900.v1.1

chitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0005224
Physical Location & Seq
Forward (+)
37292495 .. 37292749
255 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1290900.v1.1.491

Sequence Viewer

Length: 255 bp
ATGACCGAGCAAAAGCCGAAGCCTTCTTCTCATGACGTCATGGTTGGACTGTATGTACCCACAGAAGCTGACGTTGCGGCCAATCGGACTGTTGGATTTGGGCTGGTGACTAACATCATCAACGGTGGACTAGAGTGTGGAATACCCAACGATGCACGAGTGAATGATTGGATTGGTTATTTCAAAAGATATGCTGGACTGCTTAATGTCGATACTAAACCCAACTTAGACTATGAAAATCAAAAGTCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_19

Protein Analysis

85

Amino Acids

9.28

Weight (kDa)

5.15

Isoelectric Point (pI)

21.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 1 - 77 3.8e-28 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 39
AciI CCGC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 57
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 118
BauI CACGAG 1 cut(s) 156
BfaI CTAG 1 cut(s) 131
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmsI GCATC 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 36
BshFI GGCC 1 cut(s) 80
BsnI GGCC 1 cut(s) 80
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 80
BspHI TCATGA 1 cut(s) 31
BssNI GRCGYC 1 cut(s) 36
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst4CI ACNGT 3 cut(s) 51, 91, 125
BstACI GRCGYC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 80
CaiI CAGNNNCTG 1 cut(s) 68
CciI TCATGA 1 cut(s) 31
Csp6I GTAC 1 cut(s) 56
CviAII CATG 2 cut(s) 32, 40
CviJI RGCY 5 cut(s) 16, 22, 68, 80, 103
CviKI_1 RGCY 5 cut(s) 16, 22, 68, 80, 103
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 78
FaeI CATG 2 cut(s) 35, 43
FaiI YATR 5 cut(s) 33, 41, 54, 192, 234
FatI CATG 2 cut(s) 31, 39
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 2 cut(s) 35, 43
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 3 cut(s) 51, 91, 125
HpyCH4IV ACGT 2 cut(s) 36, 72
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 2 cut(s) 36, 72
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 2 cut(s) 35, 43
LpnPI CCDG 2 cut(s) 89, 180
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 131
MaeII ACGT 2 cut(s) 36, 72
MaeIII GTNAC 1 cut(s) 106
MboII GAAGA 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 25, 73
MseI TTAA 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 35, 43
NmuCI GTSAC 1 cut(s) 106
PagI TCATGA 1 cut(s) 31
PkrI GCNGC 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 78
SetI ASST 3 cut(s) 39, 70, 75
SfaNI GCATC 1 cut(s) 142
SgeI CNNG 8 cut(s) 19, 44, 52, 116, 143, 168, 170, 207
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 131
TaaI ACNGT 3 cut(s) 51, 91, 125
TaiI ACGT 2 cut(s) 39, 75
TaqI TCGA 1 cut(s) 210
TaqII GACCGA 1 cut(s) 20
TauI GCSGC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 249
XspI CTAG 1 cut(s) 131
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.