RchiOBHm_Chr7g0218441

chitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005224
Physical Location & Seq
Forward (+)
36461235 .. 36462461
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19554

Sequence Viewer

Length: 825 bp
ATGGCTGCGGTCTTGCTGTCATCTTCAGCCTTCTTCTTCTTCCTCACTACCATCTTTCTTTTCTCCATCTCATCATGGGAAGTTGAGGCTCATCCAGTATCTACTTTGATCAACAAAAAGCTTTACAACAACTTGTTTCTACACAAGGACGACACAGCATGCCCTGCAAATGATTTCTACACCTATCGCTCCTTCATCGAGGCAACCAAATACTTTCCGAGATTCGGCAGCACCGGAAGTCTAGCCACTCGAAAGCGTGAAATTGCAGCATTTCTTGCTCAGATCTCTCACGAGACCACAGGCGGGTGGGCTACAGCGCCCGACGGACCATACTCTTGGGGTTTGTGCTTTAAAGAGGAAGTCAATCCGGGAAGCAACTATTGCGACAGCACCAACAAGGAGTGGCCATGCTATCCTGGAAAATCTTACAAAGGAAGAGGACCAATTCAACTATCTTGGAACTATAATTATGGTCAGGCAGGCAAGGCATTAGGGTTTGATGGACTAAAAAATCCAGAAGTAGTAGCAAACAATTCCTTAATAGCTTTCAAAACAGCTATATGGTTCTGGATGACTGAGCAAAAGCCGAAGCCCTCTTGTCACAATGTCATGGTGGGTCGATATGTGCTCACGCAAGCTGACATGGCTGCTAATAGGACAGTCGGATTCGGGATGGTGACGAACATCATCAACGGTGGACTTGAGTGTGGAATAGGCAGCGATGCACGAGTGAATGATCGAATTGGTTATTTCAAAAGATATGCTAGTCTGTTTGGTGTTCAAACAGGACCAAATTTAGACTGTGAAAATCAAAAGTCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_19

Protein Analysis

274

Amino Acids

30.52

Weight (kDa)

8.59

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 36 - 268 8e-107 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 303
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 1 cut(s) 793
AcuI CTGAAG 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 224, 303
AgsI TTSAA 4 cut(s) 449, 550, 754, 782
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 4 cut(s) 121, 545, 557, 638
AluI AGCT 4 cut(s) 121, 545, 557, 638
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 1 cut(s) 287
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 5 cut(s) 5, 228, 266, 647, 717
ApoI RAATTY 1 cut(s) 793
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 3 cut(s) 326, 440, 788
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 688
AvaII GGWCC 3 cut(s) 326, 440, 788
BalI TGGCCA 1 cut(s) 406
BauI CACGAG 2 cut(s) 290, 726
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 4 cut(s) 240, 278, 634, 729
BccI CCATC 4 cut(s) 59, 74, 494, 667
BciT130I CCWGG 1 cut(s) 417
BclI TGATCA 1 cut(s) 108
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 2 cut(s) 242, 765
BfmI CTRYAG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 320
BglII AGATCT 1 cut(s) 282
BisI GCNGC 5 cut(s) 6, 229, 267, 648, 718
BlsI GCNGC 5 cut(s) 7, 230, 268, 649, 719
Bme1390I CCNGG 2 cut(s) 369, 417
Bme18I GGWCC 3 cut(s) 326, 440, 788
BmgT120I GGNCC 3 cut(s) 326, 440, 788
BmrFI CCNGG 2 cut(s) 369, 417
BmsI GCATC 1 cut(s) 712
BpuEI CTTGAG 1 cut(s) 722
BpuMI CCSGG 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 287
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 303
Bse1I ACTGG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 417
BseGI GGATG 3 cut(s) 91, 576, 678
BseLI CCNNNNNNNGG 2 cut(s) 224, 303
BseMII CTCAG 2 cut(s) 293, 567
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 4 cut(s) 240, 278, 634, 729
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 630
BsiSI CCGG 2 cut(s) 234, 368
BslI CCNNNNNNNGG 2 cut(s) 224, 303
BsmAI GTCTC 1 cut(s) 287
BsnI GGCC 1 cut(s) 406
Bso31I GGTCTC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 630
Bsp143I GATC 3 cut(s) 108, 282, 736
BspACI CCGC 2 cut(s) 8, 303
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 2 cut(s) 292, 568
BspTNI GGTCTC 1 cut(s) 287
BsrI ACTGG 1 cut(s) 95
BssMI GATC 3 cut(s) 108, 282, 736
BssSI CACGAG 2 cut(s) 290, 726
Bst2BI CACGAG 2 cut(s) 290, 726
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 3 cut(s) 661, 695, 803
Bst6I CTCTTC 1 cut(s) 430
BstAPI GCANNNNNTGC 3 cut(s) 164, 275, 381
BstC8I GCNNGC 3 cut(s) 160, 481, 636
BstDEI CTNAG 2 cut(s) 279, 576
BstF5I GGATG 3 cut(s) 91, 576, 678
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 3 cut(s) 111, 285, 739
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 3 cut(s) 108, 282, 736
BstMWI GCNNNNNNNGC 5 cut(s) 164, 275, 381, 485, 644
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 367, 415
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 4 cut(s) 240, 278, 634, 729
BstX2I RGATCY 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 336
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 1 cut(s) 406
BtgZI GCGATG 1 cut(s) 735
BtsCI GGATG 3 cut(s) 91, 576, 678
Cac8I GCNNGC 3 cut(s) 160, 481, 636
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 3 cut(s) 326, 440, 788
CviAII CATG 5 cut(s) 75, 159, 408, 610, 643
DdeI CTNAG 2 cut(s) 279, 576
DpnI GATC 3 cut(s) 110, 284, 738
DpnII GATC 3 cut(s) 108, 282, 736
DraI TTTAAA 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 404
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 3 cut(s) 326, 440, 788
Eco57I CTGAAG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 415
FaeI CATG 5 cut(s) 78, 162, 411, 613, 646
FatI CATG 5 cut(s) 74, 158, 407, 609, 642
FauI CCCGC 1 cut(s) 296
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 5 cut(s) 6, 229, 267, 648, 718
FokI GGATG 3 cut(s) 78, 583, 685
Fsp4HI GCNGC 5 cut(s) 6, 229, 267, 648, 718
FspBI CTAG 2 cut(s) 242, 765
GlaI GCGC 1 cut(s) 318
GluI GCNGC 5 cut(s) 6, 229, 267, 648, 718
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 1 cut(s) 406
HapII CCGG 2 cut(s) 234, 368
HhaI GCGC 1 cut(s) 319
Hin1II CATG 5 cut(s) 78, 162, 411, 613, 646
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 2 cut(s) 222, 666
HpaII CCGG 2 cut(s) 234, 368
HphI GGTGA 1 cut(s) 688
Hpy166II GTNNAC 1 cut(s) 698
Hpy188I TCNGA 3 cut(s) 219, 282, 665
Hpy188III TCNNGA 4 cut(s) 290, 515, 568, 670
Hpy8I GTNNAC 1 cut(s) 698
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 40, 202
HpyCH4III ACNGT 3 cut(s) 661, 695, 803
HpyCH4V TGCA 3 cut(s) 167, 266, 725
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 275, 381, 485, 644
HpyF3I CTNAG 2 cut(s) 279, 576
Hsp92II CATG 5 cut(s) 78, 162, 411, 613, 646
HspAI GCGC 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 3 cut(s) 108, 282, 736
LmnI GCTCC 1 cut(s) 194
Lsp1109I GCAGC 4 cut(s) 240, 278, 634, 729
LweI GCATC 1 cut(s) 712
MaeI CTAG 2 cut(s) 242, 765
MaeIII GTNAC 2 cut(s) 599, 676
MalI GATC 3 cut(s) 110, 284, 738
MboI GATC 3 cut(s) 108, 282, 736
MboII GAAGA 5 cut(s) 15, 25, 28, 31, 447
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 630
MlsI TGGCCA 1 cut(s) 406
MluCI AATT 6 cut(s) 261, 444, 466, 532, 741, 793
MluNI TGGCCA 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 643
MnlI CCTC 6 cut(s) 53, 79, 193, 349, 431, 604
Mox20I TGGCCA 1 cut(s) 406
MscI TGGCCA 1 cut(s) 406
MseI TTAA 3 cut(s) 351, 539, 823
Msp20I TGGCCA 1 cut(s) 406
MspI CCGG 2 cut(s) 234, 368
MspR9I CCNGG 2 cut(s) 369, 417
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 5 cut(s) 164, 275, 381, 485, 644
NciI CCSGG 1 cut(s) 369
NdeII GATC 3 cut(s) 108, 282, 736
NlaIII CATG 5 cut(s) 78, 162, 411, 613, 646
NmuCI GTSAC 2 cut(s) 599, 676
NspI RCATGY 1 cut(s) 162
PaeI GCATGC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 222, 666
PfoI TCCNGGA 2 cut(s) 367, 415
PkrI GCNGC 5 cut(s) 7, 230, 268, 649, 719
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspPI GGNCC 3 cut(s) 326, 440, 788
PsuI RGATCY 1 cut(s) 282
SaqAI TTAA 3 cut(s) 351, 539, 823
SatI GCNGC 5 cut(s) 6, 229, 267, 648, 718
Sau3AI GATC 3 cut(s) 108, 282, 736
Sau96I GGNCC 3 cut(s) 326, 440, 788
ScrFI CCNGG 2 cut(s) 369, 417
SduI GDGCHC 1 cut(s) 630
SetI ASST 5 cut(s) 123, 185, 547, 559, 640
SfaNI GCATC 1 cut(s) 712
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 3 cut(s) 326, 440, 788
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
SphI GCATGC 1 cut(s) 162
Sse9I AATT 6 cut(s) 261, 444, 466, 532, 741, 793
SsiI CCGC 2 cut(s) 8, 303
SspMI CTAG 2 cut(s) 242, 765
StyD4I CCNGG 2 cut(s) 367, 415
TaaI ACNGT 3 cut(s) 661, 695, 803
TaqI TCGA 4 cut(s) 198, 250, 619, 739
TasI AATT 6 cut(s) 261, 444, 466, 532, 741, 793
TfiI GAWTC 2 cut(s) 222, 666
Tru1I TTAA 3 cut(s) 351, 539, 823
Tru9I TTAA 3 cut(s) 351, 539, 823
TseFI GTSAC 2 cut(s) 599, 676
TseI GCWGC 5 cut(s) 5, 228, 266, 647, 717
Tsp45I GTSAC 2 cut(s) 599, 676
TspDTI ATGAA 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 339
VpaK11BI GGWCC 3 cut(s) 326, 440, 788
XapI RAATTY 1 cut(s) 793
XceI RCATGY 1 cut(s) 162
XspI CTAG 2 cut(s) 242, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.