FvH4_1g26180

chitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005224
Physical Location & Seq
Reverse (-)
18038965 .. 18040459
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26180.t1

Sequence Viewer

Length: 825 bp
ATGGCTGCGGTCTCATTCTCATCTGCAGTCTTCCTCTTCTCCCTCACTACCATCTTTCTTGTCTCCATCTCATCATGGGAGGCCGAGGCTCATCCAGTATCTACTTTGGTTAAGAAAAACCTCTACAAAATCTTGTTTTTACACAAGGACGACAAGGCATGCCCTGCAAACAACTTCTACACCTATAAATCATTCATCAAGGCAACCAAATCCTTCCCGGCATTCGCCAATACCGGAAGTGTAGCCACCCGAAAGCGCGAGATTGCAGCCTTTCTTGCTCAGATCTCTCATGAGACCACCGGCGGGTGGGCTACTGCGCCCGACGGACCATATTCTTGGGGTTTGTGCTATAAAGAGGAGATCAGTCCGGGTAGCAACTACTGTGATGACACTGACAAAGAGTGGCCATGCTATCCTGGCAAATCTTACAAAGGAAGAGGACCAGTTCAATTATCTTGGAACTATAACTATGGGCAGGCAGGCAAGGCATTAGGGTTTGATGGGCTAAGGAATCCAGAATTAGTAGCAAACAATTCCATACTCGCATTCAAAACAGCTTTATGGTTCTGGATGACTGAGCAGAAGCCGAAGCCCTCATGTCATGATGTTATGGTAGGTCGATATGTGCTCACGGAAGCTGACGTGGCGGCTAATCGGACTGCCGGATTTGGGATGGTGACGAACATCATCAACGGCAACCTCGAGTGTGGAATAGGTAGCGATGCACGAGTGAATGATCGAATTGGTTATTTCAAAAGATATGCTAGTGTGTTTAGTGTTCAAACAGGGCCAAGTTTAGATTGTGGAAATCAGAAACCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_19

Protein Analysis

275

Amino Acids

30.21

Weight (kDa)

8.72

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 36 - 268 7.8e-106 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 258
AciI CCGC 3 cut(s) 8, 303, 647
AcoI YGGCCR 1 cut(s) 404
AfiI CCNNNNNNNGG 3 cut(s) 303, 306, 669
AgsI TTSAA 4 cut(s) 449, 550, 754, 782
AjiI CACGTC 1 cut(s) 643
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 2 cut(s) 557, 638
AluI AGCT 2 cut(s) 557, 638
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 3 cut(s) 16, 67, 287
Ama87I CYCGRG 1 cut(s) 701
AoxI GGCC 3 cut(s) 81, 404, 788
ApeKI GCWGC 2 cut(s) 5, 266
AspLEI GCGC 2 cut(s) 258, 319
AspS9I GGNCC 3 cut(s) 326, 440, 788
AsuC2I CCSGG 2 cut(s) 218, 369
AsuHPI GGTGA 1 cut(s) 688
AvaI CYCGRG 1 cut(s) 701
AvaII GGWCC 2 cut(s) 326, 440
BalI TGGCCA 1 cut(s) 406
BauI CACGAG 1 cut(s) 726
BbsI GAAGAC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 1 cut(s) 278
BccI CCATC 4 cut(s) 59, 74, 494, 667
BceAI ACGGC 1 cut(s) 709
BciT130I CCWGG 1 cut(s) 417
BcnI CCSGG 2 cut(s) 218, 369
BcoDI GTCTC 3 cut(s) 16, 67, 287
BfaI CTAG 1 cut(s) 765
BfmI CTRYAG 1 cut(s) 24
BglII AGATCT 1 cut(s) 282
BisI GCNGC 3 cut(s) 6, 267, 648
BlsI GCNGC 3 cut(s) 7, 268, 649
Bme1390I CCNGG 3 cut(s) 218, 369, 417
Bme18I GGWCC 2 cut(s) 326, 440
BmeT110I CYCGRG 1 cut(s) 701
BmgBI CACGTC 1 cut(s) 643
BmgT120I GGNCC 3 cut(s) 326, 440, 788
BmrFI CCNGG 3 cut(s) 218, 369, 417
BmsI GCATC 1 cut(s) 712
BpiI GAAGAC 1 cut(s) 22
Bpu10I CCTNAGC 1 cut(s) 506
BpuMI CCSGG 2 cut(s) 218, 369
BsaI GGTCTC 2 cut(s) 16, 287
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 3 cut(s) 303, 306, 669
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 95, 443
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 3 cut(s) 91, 576, 678
BseLI CCNNNNNNNGG 3 cut(s) 303, 306, 669
BseMII CTCAG 2 cut(s) 293, 567
BseNI ACTGG 2 cut(s) 95, 443
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 3 cut(s) 83, 406, 790
BsiHKAI GWGCWC 1 cut(s) 630
BsiHKCI CYCGRG 1 cut(s) 701
BsiSI CCGG 5 cut(s) 218, 234, 300, 368, 663
BslI CCNNNNNNNGG 3 cut(s) 303, 306, 669
BsmAI GTCTC 3 cut(s) 16, 67, 287
BsmI GAATGC 2 cut(s) 221, 545
BsnI GGCC 3 cut(s) 83, 406, 790
Bso31I GGTCTC 2 cut(s) 16, 287
BsoBI CYCGRG 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 630
Bsp143I GATC 3 cut(s) 282, 360, 736
BspACI CCGC 3 cut(s) 8, 303, 647
BspANI GGCC 3 cut(s) 83, 406, 790
BspCNI CTCAG 2 cut(s) 292, 568
BspFNI CGCG 1 cut(s) 258
BspHI TCATGA 2 cut(s) 289, 601
BspMAI CTGCAG 1 cut(s) 28
BspTNI GGTCTC 2 cut(s) 16, 287
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 2 cut(s) 95, 443
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 3 cut(s) 282, 360, 736
BssSI CACGAG 1 cut(s) 726
Bst2BI CACGAG 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 2 cut(s) 41, 430
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 3 cut(s) 160, 477, 481
BstDEI CTNAG 3 cut(s) 279, 506, 576
BstF5I GGATG 3 cut(s) 91, 576, 678
BstFNI CGCG 1 cut(s) 258
BstHHI GCGC 2 cut(s) 258, 319
BstKTI GATC 3 cut(s) 285, 363, 739
BstMAI GTCTC 3 cut(s) 16, 67, 287
BstMBI GATC 3 cut(s) 282, 360, 736
BstMWI GCNNNNNNNGC 5 cut(s) 164, 275, 417, 485, 644
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 3 cut(s) 216, 367, 415
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 336
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 3 cut(s) 83, 406, 790
BtgZI GCGATG 1 cut(s) 735
BtrI CACGTC 1 cut(s) 643
BtsCI GGATG 3 cut(s) 91, 576, 678
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 3 cut(s) 160, 477, 481
CciI TCATGA 2 cut(s) 289, 601
CfoI GCGC 2 cut(s) 258, 319
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 3 cut(s) 326, 440, 788
CviAII CATG 6 cut(s) 75, 159, 290, 408, 597, 602
DdeI CTNAG 3 cut(s) 279, 506, 576
DpnI GATC 3 cut(s) 284, 362, 738
DpnII GATC 3 cut(s) 282, 360, 736
EaeI YGGCCR 1 cut(s) 404
Eam1104I CTCTTC 2 cut(s) 41, 430
EarI CTCTTC 2 cut(s) 41, 430
Eco31I GGTCTC 2 cut(s) 16, 287
Eco47I GGWCC 2 cut(s) 326, 440
Eco88I CYCGRG 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 415
FaeI CATG 6 cut(s) 78, 162, 293, 411, 600, 605
FatI CATG 6 cut(s) 74, 158, 289, 407, 596, 601
FauI CCCGC 1 cut(s) 296
Fnu4HI GCNGC 3 cut(s) 6, 267, 648
FokI GGATG 3 cut(s) 78, 583, 685
Fsp4HI GCNGC 3 cut(s) 6, 267, 648
FspBI CTAG 1 cut(s) 765
GlaI GCGC 2 cut(s) 257, 318
GluI GCNGC 3 cut(s) 6, 267, 648
HaeIII GGCC 3 cut(s) 83, 406, 790
HapII CCGG 5 cut(s) 218, 234, 300, 368, 663
HhaI GCGC 2 cut(s) 258, 319
Hin1II CATG 6 cut(s) 78, 162, 293, 411, 600, 605
Hin6I GCGC 2 cut(s) 256, 317
HinP1I GCGC 2 cut(s) 256, 317
HinfI GANTC 1 cut(s) 511
HpaII CCGG 5 cut(s) 218, 234, 300, 368, 663
HphI GGTGA 1 cut(s) 688
Hpy188I TCNGA 3 cut(s) 282, 657, 813
Hpy188III TCNNGA 4 cut(s) 290, 515, 568, 602
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 4 cut(s) 26, 167, 266, 725
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 275, 417, 485, 644
HpyF3I CTNAG 3 cut(s) 279, 506, 576
HpySE526I ACGT 1 cut(s) 642
Hsp92II CATG 6 cut(s) 78, 162, 293, 411, 600, 605
HspAI GCGC 2 cut(s) 256, 317
Kzo9I GATC 3 cut(s) 282, 360, 736
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 1 cut(s) 712
MaeI CTAG 1 cut(s) 765
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 1 cut(s) 676
MalI GATC 3 cut(s) 284, 362, 738
MboI GATC 3 cut(s) 282, 360, 736
MboII GAAGA 3 cut(s) 22, 28, 447
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 630
MlsI TGGCCA 1 cut(s) 406
MluCI AATT 4 cut(s) 449, 518, 532, 741
MluNI TGGCCA 1 cut(s) 406
MnlI CCTC 9 cut(s) 44, 53, 73, 79, 131, 349, 431, 604, 710
Mox20I TGGCCA 1 cut(s) 406
MscI TGGCCA 1 cut(s) 406
MseI TTAA 2 cut(s) 111, 823
Msp20I TGGCCA 1 cut(s) 406
MspI CCGG 5 cut(s) 218, 234, 300, 368, 663
MspR9I CCNGG 3 cut(s) 218, 369, 417
Mva1269I GAATGC 2 cut(s) 221, 545
MvaI CCWGG 1 cut(s) 417
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 5 cut(s) 164, 275, 417, 485, 644
NciI CCSGG 2 cut(s) 218, 369
NdeII GATC 3 cut(s) 282, 360, 736
NlaIII CATG 6 cut(s) 78, 162, 293, 411, 600, 605
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 676
NspI RCATGY 1 cut(s) 162
PaeI GCATGC 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 701
PagI TCATGA 2 cut(s) 289, 601
PcsI WCGNNNNNNNCGW 1 cut(s) 699
PctI GAATGC 2 cut(s) 221, 545
PfeI GAWTC 1 cut(s) 511
PkrI GCNGC 3 cut(s) 7, 268, 649
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspPI GGNCC 3 cut(s) 326, 440, 788
PspXI VCTCGAGB 1 cut(s) 701
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 282
SaqAI TTAA 2 cut(s) 111, 823
SatI GCNGC 3 cut(s) 6, 267, 648
Sau3AI GATC 3 cut(s) 282, 360, 736
Sau96I GGNCC 3 cut(s) 326, 440, 788
ScrFI CCNGG 3 cut(s) 218, 369, 417
SduI GDGCHC 1 cut(s) 630
SetI ASST 8 cut(s) 123, 185, 559, 619, 640, 645, 702, 718
SfaNI GCATC 1 cut(s) 712
SfcI CTRYAG 1 cut(s) 24
Sfr274I CTCGAG 1 cut(s) 701
SgrAI CRCCGGYG 1 cut(s) 299
SinI GGWCC 2 cut(s) 326, 440
SlaI CTCGAG 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
SphI GCATGC 1 cut(s) 162
Sse9I AATT 4 cut(s) 449, 518, 532, 741
SsiI CCGC 3 cut(s) 8, 303, 647
SspMI CTAG 1 cut(s) 765
StyD4I CCNGG 3 cut(s) 216, 367, 415
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 1 cut(s) 645
TaqI TCGA 3 cut(s) 619, 702, 739
TasI AATT 4 cut(s) 449, 518, 532, 741
TauI GCSGC 1 cut(s) 650
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 2 cut(s) 111, 823
Tru9I TTAA 2 cut(s) 111, 823
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 2 cut(s) 5, 266
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 1 cut(s) 184
TspGWI ACGGA 2 cut(s) 339, 647
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 2 cut(s) 326, 440
XceI RCATGY 1 cut(s) 162
XhoI CTCGAG 1 cut(s) 701
XspI CTAG 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.