AT1G02370

repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
474373 .. 476612
2240 bp
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UTR
Exon/CDS
Intron
AT1G02370.1

Sequence Viewer

Length: 1614 bp
ATGAATTTCCGTAATCTGATTGCTTCCGGTTCTCGCCTCGGCAAGAGGTTCTGTGCAACGGTATTTGCTCCGGCGTCGGCGACTGGCATCGTCGAAGCCTCTGTTTCTTCTCCAGCGGCGGCGAATGTCGTCGAAGCCTCTGTTTCTTCTCCGGCGGCGGAGAATGGCGTCAGAACCTCTGTTGCTGCTCCGACGGTGGCTTCAAGGCAGCGAGAGTTGTACAAGAAACTTTCTATGCTTAGTGTGACGGGAGGAACAGTGGCAGAGACGTTAAATCAGTTCATCATGGAGGGTATTACTGTCAGAAAAGACGATCTCTTTCGCTGTGCTAAAACCCTTCGCAAATTCCGTCGACCTCAACACGCTTTTGAGATCTTTGATTGGATGGAGAAGAGGAAAATGACATTTTCTGTGTCTGATCATGCAATTTGTTTGGATCTAATTGGAAAGACTAAAGGTTTAGAAGCAGCTGAGAACTACTTTAACAACTTAGATCCTTCTGCAAAGAATCATCAGTCGACTTATGGGGCGCTCATGAACTGTTACTGTGTTGAACTTGAGGAAGAGAAAGCAAAGGCTCATTTTGAGATAATGGATGAGCTTAACTTTGTTAACAATTCGTTACCGTTTAATAACATGATGTCTATGTACATGCGGTTGAGTCAACCGGAGAAGGTACCTGTGTTGGTTGATGCGATGAAACAGAGGGGTATATCTCCTTGTGGTGTCACTTACTCTATATGGATGCAGAGCTGTGGAAGTTTGAATGACTTAGATGGATTAGAGAAGATTATAGATGAGATGGGGAAAGACAGTGAAGCTAAAACCACTTGGAATACTTTCTCTAATCTGGCTGCAATCTACACTAAAGCTGGTCTTTACGAGAAGGCGGATTCTGCACTGAAATCTATGGAGGAGAAAATGAATCCTAACAACCGTGATTCCCACCATTTTCTCATGAGTTTGTACGCTGGAATCTCGAAAGGTCCTGAGGTTTATAGGGTTTGGGAATCGCTGAAGAAGGCTCGTCCTGAGGTCAACAACTTGAGCTATCTAGTCATGTTACAAGCGATGAGTAAACTAGGCGACTTAGATGGGATTAAGAAGATTTTCACAGAGTGGGAATCGAAATGCTGGGCTTACGATATGAGGCTGGCTAATATCGCGATTAACACGTATTTGAAAGGGAATATGTATGAAGAAGCAGAGAAGATTCTTGATGGTGCCATGAAAAAGTCTAAAGGTCCTTTCTCCAAAGCGAGACAGCTTCTGATGATCCATCTGTTGGAGAACGATAAAGCGGATTTGGCTATGAAGCATTTGGAAGCAGCGGTTTCTGATTCTGCAGAGAACAAAGACGAATGGGGCTGGAGCTCAGAGCTGGTCAGCTTGTTTTTCCTTCACTTTGAGAAAGCTAAAGATGTTGATGGAGCGGAAGATTTCTGCAAGATTTTGTCGAATTGGAAACCTCTTGATTCTGAAACTATGACATTTCTCATAAAGACTTATGCAGCAGCAGAGAAGACTAGTCCTGATATGCGAGAGAGATTGTCTCAACAGCAGATCGAAGTAAGCGAGGAGATCCAAGACTTGCTTAAAACAGTTTGTCCCTAA

Protein Analysis

537

Amino Acids

60.35

Weight (kDa)

5.98

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 210 - 252 2.6e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 676
AccB1I GGYRCC 2 cut(s) 676, 1223
AccB7I CCANNNNNTGG 1 cut(s) 1285
AccBSI CCGCTC 1 cut(s) 1433
AccI GTMKAC 2 cut(s) 352, 518
AccII CGCG 1 cut(s) 1166
AciI CCGC 9 cut(s) 116, 119, 155, 158, 655, 890, 1301, 1331, 1433
AclWI GGATC 4 cut(s) 444, 488, 1270, 1576
AcsI RAATTY 2 cut(s) 4, 344
AcuI CTGAAG 1 cut(s) 1037
AcyI GRCGYC 2 cut(s) 74, 168
AdeI CACNNNGTG 1 cut(s) 1119
AfaI GTAC 4 cut(s) 221, 650, 678, 968
AfiI CCNNNNNNNGG 1 cut(s) 1285
AflIII ACRYGT 1 cut(s) 1173
AgsI TTSAA 4 cut(s) 204, 554, 766, 1183
AhlI ACTAGT 1 cut(s) 1526
Alw21I GWGCWC 1 cut(s) 1376
Alw26I GTCTC 3 cut(s) 260, 1255, 1557
AlwI GGATC 4 cut(s) 444, 488, 1270, 1576
AlwNI CAGNNNCTG 1 cut(s) 1270
ApeKI GCWGC 7 cut(s) 185, 208, 467, 854, 1328, 1511, 1514
ApoI RAATTY 2 cut(s) 4, 344
Asp700I GAANNNNTTC 2 cut(s) 839, 1109
Asp718I GGTACC 1 cut(s) 676
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 2 cut(s) 986, 1244
AvaII GGWCC 2 cut(s) 986, 1244
AxyI CCTNAGG 2 cut(s) 990, 1032
BaeI ACNNNNGTAYC 2 cut(s) 668, 701
BanI GGYRCC 2 cut(s) 676, 1223
BanII GRGCYC 1 cut(s) 1376
BbsI GAAGAC 1 cut(s) 1529
Bbv12I GWGCWC 1 cut(s) 1376
BbvI GCAGC 7 cut(s) 172, 220, 479, 841, 1340, 1523, 1526
BccI CCATC 7 cut(s) 379, 770, 796, 1088, 1214, 1287, 1421
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 3 cut(s) 260, 1255, 1557
BcuI ACTAGT 1 cut(s) 1526
BfaI CTAG 3 cut(s) 1055, 1082, 1527
BfmI CTRYAG 1 cut(s) 1344
BfoI RGCGCY 1 cut(s) 533
BglII AGATCT 1 cut(s) 372
Bme18I GGWCC 2 cut(s) 986, 1244
BmgT120I GGNCC 2 cut(s) 986, 1244
BmiI GGNNCC 2 cut(s) 678, 1225
BmsI GCATC 3 cut(s) 96, 682, 735
BpiI GAAGAC 1 cut(s) 1529
BplI GAGNNNNNCTC 2 cut(s) 1537, 1569
BpmI CTGGAG 2 cut(s) 96, 1390
BpuEI CTTGAG 2 cut(s) 578, 1066
BsaAI YACGTR 1 cut(s) 1176
BsaHI GRCGYC 2 cut(s) 74, 168
BsaJI CCNNGG 1 cut(s) 37
BsaWI WCCGGW 2 cut(s) 26, 667
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 1285
Bse1I ACTGG 1 cut(s) 88
Bse21I CCTNAGG 2 cut(s) 990, 1032
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 3 cut(s) 390, 601, 750
BseLI CCNNNNNNNGG 1 cut(s) 1285
BseMII CTCAG 4 cut(s) 462, 981, 1023, 1389
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 929, 1592
BseXI GCAGC 7 cut(s) 172, 220, 479, 841, 1340, 1523, 1526
BseYI CCCAGC 1 cut(s) 1134
BsgI GTGCAG 1 cut(s) 882
Bsh1236I CGCG 1 cut(s) 1166
BshNI GGYRCC 2 cut(s) 676, 1223
BsiHKAI GWGCWC 1 cut(s) 1376
BsiSI CCGG 4 cut(s) 27, 71, 152, 668
BslFI GGGAC 1 cut(s) 1593
BslI CCNNNNNNNGG 1 cut(s) 1285
BsmAI GTCTC 3 cut(s) 260, 1255, 1557
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 1593
Bsp1286I GDGCHC 1 cut(s) 1376
Bsp1407I TGTACA 2 cut(s) 219, 648
Bsp143I GATC 8 cut(s) 313, 372, 418, 436, 493, 1275, 1563, 1581
Bsp68I TCGCGA 1 cut(s) 1166
BspACI CCGC 9 cut(s) 116, 119, 155, 158, 655, 890, 1301, 1331, 1433
BspCNI CTCAG 4 cut(s) 463, 982, 1024, 1388
BspFNI CGCG 1 cut(s) 1166
BspHI TCATGA 2 cut(s) 534, 957
BspLI GGNNCC 2 cut(s) 678, 1225
BspMAI CTGCAG 1 cut(s) 1348
BspPI GGATC 4 cut(s) 444, 488, 1270, 1576
BspT107I GGYRCC 2 cut(s) 676, 1223
BsrBI CCGCTC 1 cut(s) 1433
BsrGI TGTACA 2 cut(s) 219, 648
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 8 cut(s) 313, 372, 418, 436, 493, 1275, 1563, 1581
BssNI GRCGYC 2 cut(s) 74, 168
Bst6I CTCTTC 2 cut(s) 386, 558
BstACI GRCGYC 2 cut(s) 74, 168
BstAUI TGTACA 2 cut(s) 219, 648
BstBAI YACGTR 1 cut(s) 1176
BstC8I GCNNGC 1 cut(s) 1155
BstDEI CTNAG 8 cut(s) 239, 471, 490, 772, 990, 1032, 1090, 1375
BstF5I GGATG 3 cut(s) 390, 601, 750
BstFNI CGCG 1 cut(s) 1166
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 8 cut(s) 316, 375, 421, 439, 496, 1278, 1566, 1584
BstMAI GTCTC 3 cut(s) 260, 1255, 1557
BstMBI GATC 8 cut(s) 313, 372, 418, 436, 493, 1275, 1563, 1581
BstMWI GCNNNNNNNGC 3 cut(s) 896, 1163, 1307
BstNSI RCATGY 1 cut(s) 655
BstSFI CTRYAG 1 cut(s) 1344
BstUI CGCG 1 cut(s) 1166
BstV1I GCAGC 7 cut(s) 172, 220, 479, 841, 1340, 1523, 1526
BstV2I GAAGAC 1 cut(s) 1529
BstX2I RGATCY 4 cut(s) 372, 436, 493, 1581
BstYI RGATCY 4 cut(s) 372, 436, 493, 1581
Bsu36I CCTNAGG 2 cut(s) 990, 1032
BtgZI GCGATG 2 cut(s) 710, 1085
BtsCI GGATG 3 cut(s) 390, 601, 750
BtsIMutI CAGTG 3 cut(s) 264, 820, 899
BtuMI TCGCGA 1 cut(s) 1166
Cac8I GCNNGC 1 cut(s) 1155
CaiI CAGNNNCTG 1 cut(s) 1270
CciI TCATGA 2 cut(s) 534, 957
CfoI GCGC 1 cut(s) 532
Cfr13I GGNCC 2 cut(s) 986, 1244
CseI GACGC 2 cut(s) 63, 157
Csp6I GTAC 4 cut(s) 220, 649, 677, 967
CviAII CATG 8 cut(s) 286, 422, 535, 637, 652, 958, 1060, 1228
CviQI GTAC 4 cut(s) 220, 649, 677, 967
DdeI CTNAG 8 cut(s) 239, 471, 490, 772, 990, 1032, 1090, 1375
DpnI GATC 8 cut(s) 315, 374, 420, 438, 495, 1277, 1565, 1583
DpnII GATC 8 cut(s) 313, 372, 418, 436, 493, 1275, 1563, 1581
DraIII CACNNNGTG 1 cut(s) 1119
Eam1104I CTCTTC 2 cut(s) 386, 558
EarI CTCTTC 2 cut(s) 386, 558
EciI GGCGGA 2 cut(s) 173, 905
Ecl136II GAGCTC 1 cut(s) 1374
Eco24I GRGCYC 1 cut(s) 1376
Eco47I GGWCC 2 cut(s) 986, 1244
Eco53kI GAGCTC 1 cut(s) 1374
Eco57I CTGAAG 1 cut(s) 1037
Eco81I CCTNAGG 2 cut(s) 990, 1032
EcoICRI GAGCTC 1 cut(s) 1374
EcoO109I RGGNCCY 2 cut(s) 986, 1244
EcoT38I GRGCYC 1 cut(s) 1376
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 8 cut(s) 289, 425, 538, 640, 655, 961, 1063, 1231
FalI AAGNNNNNCTT 4 cut(s) 861, 893, 1578, 1610
FaqI GGGAC 1 cut(s) 1593
FatI CATG 8 cut(s) 285, 421, 534, 636, 651, 957, 1059, 1227
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 2 cut(s) 352, 518
FokI GGATG 3 cut(s) 397, 608, 757
FriOI GRGCYC 1 cut(s) 1376
FspBI CTAG 3 cut(s) 1055, 1082, 1527
GlaI GCGC 1 cut(s) 531
GsaI CCCAGC 1 cut(s) 1138
GsuI CTGGAG 2 cut(s) 96, 1390
HaeII RGCGCY 1 cut(s) 533
HapII CCGG 4 cut(s) 27, 71, 152, 668
HgaI GACGC 2 cut(s) 63, 157
HhaI GCGC 1 cut(s) 532
Hin1I GRCGYC 2 cut(s) 74, 168
Hin1II CATG 8 cut(s) 289, 425, 538, 640, 655, 961, 1063, 1231
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 5 cut(s) 353, 519, 613, 665, 1039
HindII GTYRAC 5 cut(s) 353, 519, 613, 665, 1039
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 4 cut(s) 27, 71, 152, 668
Hpy166II GTNNAC 6 cut(s) 353, 519, 613, 665, 1039, 1079
Hpy188I TCNGA 9 cut(s) 18, 173, 192, 305, 418, 1272, 1339, 1378, 1480
Hpy188III TCNNGA 9 cut(s) 535, 958, 979, 989, 1031, 1165, 1217, 1472, 1532
Hpy8I GTNNAC 6 cut(s) 353, 519, 613, 665, 1039, 1079
Hpy99I CGWCG 5 cut(s) 79, 95, 134, 196, 354
HpyAV CCTTC 6 cut(s) 347, 507, 667, 880, 1015, 1409
HpyCH4IV ACGT 2 cut(s) 269, 1175
HpyCH4V TGCA 9 cut(s) 56, 425, 503, 748, 857, 899, 1346, 1446, 1511
HpyF10VI GCNNNNNNNGC 3 cut(s) 896, 1163, 1307
HpyF3I CTNAG 8 cut(s) 239, 471, 490, 772, 990, 1032, 1090, 1375
HpySE526I ACGT 2 cut(s) 269, 1175
Hsp92I GRCGYC 2 cut(s) 74, 168
Hsp92II CATG 8 cut(s) 289, 425, 538, 640, 655, 961, 1063, 1231
HspAI GCGC 1 cut(s) 530
KpnI GGTACC 1 cut(s) 680
Ksp22I TGATCA 1 cut(s) 418
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 8 cut(s) 313, 372, 418, 436, 493, 1275, 1563, 1581
LmnI GCTCC 4 cut(s) 73, 193, 1371, 1430
Lsp1109I GCAGC 7 cut(s) 172, 220, 479, 841, 1340, 1523, 1526
LweI GCATC 3 cut(s) 96, 682, 735
MaeI CTAG 3 cut(s) 1055, 1082, 1527
MaeII ACGT 2 cut(s) 269, 1175
MaeIII GTNAC 5 cut(s) 244, 542, 621, 727, 1062
MalI GATC 8 cut(s) 315, 374, 420, 438, 495, 1277, 1565, 1583
MbiI CCGCTC 1 cut(s) 1433
MboI GATC 8 cut(s) 313, 372, 418, 436, 493, 1275, 1563, 1581
MflI RGATCY 4 cut(s) 372, 436, 493, 1581
MhlI GDGCHC 1 cut(s) 1376
MluCI AATT 6 cut(s) 4, 344, 426, 441, 616, 1459
MlyI GAGTC 1 cut(s) 670
MmeI TCCRAC 2 cut(s) 215, 1266
MroXI GAANNNNTTC 2 cut(s) 839, 1109
MseI TTAA 8 cut(s) 272, 483, 603, 612, 630, 1101, 1170, 1596
MspA1I CMGCKG 3 cut(s) 116, 470, 1331
MspI CCGG 4 cut(s) 27, 71, 152, 668
MvnI CGCG 1 cut(s) 1166
MwoI GCNNNNNNNGC 3 cut(s) 896, 1163, 1307
NdeII GATC 8 cut(s) 313, 372, 418, 436, 493, 1275, 1563, 1581
NlaIII CATG 8 cut(s) 289, 425, 538, 640, 655, 961, 1063, 1231
NlaIV GGNNCC 2 cut(s) 678, 1225
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 244, 727
NruI TCGCGA 1 cut(s) 1166
NspI RCATGY 1 cut(s) 655
PagI TCATGA 2 cut(s) 534, 957
PcsI WCGNNNNNNNCGW 2 cut(s) 346, 1572
PdmI GAANNNNTTC 2 cut(s) 839, 1109
PflMI CCANNNNNTGG 1 cut(s) 1285
PleI GAGTC 1 cut(s) 669
PpsI GAGTC 1 cut(s) 669
Ppu21I YACGTR 1 cut(s) 1176
PpuMI RGGWCCY 2 cut(s) 986, 1244
Psp124BI GAGCTC 1 cut(s) 1376
Psp5II RGGWCCY 2 cut(s) 986, 1244
PspFI CCCAGC 1 cut(s) 1134
PspN4I GGNNCC 2 cut(s) 678, 1225
PspPI GGNCC 2 cut(s) 986, 1244
PspPPI RGGWCCY 2 cut(s) 986, 1244
PstI CTGCAG 1 cut(s) 1348
PstNI CAGNNNCTG 1 cut(s) 1270
PsuI RGATCY 4 cut(s) 372, 436, 493, 1581
PvuII CAGCTG 1 cut(s) 470
RruI TCGCGA 1 cut(s) 1166
RsaI GTAC 4 cut(s) 221, 650, 678, 968
RsaNI GTAC 4 cut(s) 220, 649, 677, 967
SacI GAGCTC 1 cut(s) 1376
SalI GTCGAC 2 cut(s) 351, 517
SaqAI TTAA 8 cut(s) 272, 483, 603, 612, 630, 1101, 1170, 1596
Sau3AI GATC 8 cut(s) 313, 372, 418, 436, 493, 1275, 1563, 1581
Sau96I GGNCC 2 cut(s) 986, 1244
SchI GAGTC 1 cut(s) 670
SduI GDGCHC 1 cut(s) 1376
SfaNI GCATC 3 cut(s) 96, 682, 735
SfcI CTRYAG 1 cut(s) 1344
SinI GGWCC 2 cut(s) 986, 1244
SmlI CTYRAG 2 cut(s) 557, 1045
SmoI CTYRAG 2 cut(s) 557, 1045
SpeI ACTAGT 1 cut(s) 1526
Sse9I AATT 6 cut(s) 4, 344, 426, 441, 616, 1459
SsiI CCGC 9 cut(s) 116, 119, 155, 158, 655, 890, 1301, 1331, 1433
SspMI CTAG 3 cut(s) 1055, 1082, 1527
SstI GAGCTC 1 cut(s) 1376
TaiI ACGT 2 cut(s) 272, 1178
TaqI TCGA 8 cut(s) 93, 132, 352, 518, 980, 1127, 1457, 1566
TasI AATT 6 cut(s) 4, 344, 426, 441, 616, 1459
TatI WGTACW 2 cut(s) 219, 648
TauI GCSGC 3 cut(s) 119, 122, 158
Tru1I TTAA 8 cut(s) 272, 483, 603, 612, 630, 1101, 1170, 1596
Tru9I TTAA 8 cut(s) 272, 483, 603, 612, 630, 1101, 1170, 1596
TscAI CASTG 3 cut(s) 264, 820, 906
TseFI GTSAC 2 cut(s) 244, 727
TseI GCWGC 7 cut(s) 185, 208, 467, 854, 1328, 1511, 1514
Tsp45I GTSAC 2 cut(s) 244, 727
TspDTI ATGAA 8 cut(s) 17, 271, 551, 713, 938, 1212, 1244, 1328
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 3 cut(s) 264, 820, 906
Van91I CCANNNNNTGG 1 cut(s) 1285
VpaK11BI GGWCC 2 cut(s) 986, 1244
XapI RAATTY 2 cut(s) 4, 344
XceI RCATGY 1 cut(s) 655
XmiI GTMKAC 2 cut(s) 352, 518
XmnI GAANNNNTTC 2 cut(s) 839, 1109
XspI CTAG 3 cut(s) 1055, 1082, 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.