Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006200

Physical Location & Seq

Genomic Coordinates Reverse (-)

3859662 .. 3860604

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTCCGTTTTCTTCTTCTTCTGCTGAGATTAAGATCGCGAGAACGGCTCCGTTTTCTTCTTCTGCTGAGAACAAAGGGAACAGGCAGATCAACGGAGCTTCTTCTTCTGCTTCCTCTTGTGATGCTGAGAATGCAAAGAGTGGCGGATCTCGTCAGCTCGGCAAAGCAGCTTACATGGAAGGCAAACATGTAGATGCTCTCCAGATCTTTATGTGGATGCATAGAAAGGAGATGAGTTTCTCTACCTCTGAGGTTGCACTCTTTGTGGATATCATTGGTAACACTATCGGCATAGCTGCTGCTCACTCCTACTTGAAGAAAGTAGACCCAAACTGCGACCAAATGCACAATCGTACCGAGAATTGGCCTGCTTTCGTGTCTCTCGTGAAGTTGGAGACTAAGCTGTTAAAGGAAAACGGGATAGTTCACGCTACTCGCCCTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031966 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045182 GO:0045727 GO:0045948 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070129 GO:0070131 GO:0070132 GO:0070134 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

150

Amino Acids

16.29

Weight (kDa)

9.17

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02370 AT1G11470 AT4G01990
fragaria_vesca	FvH4_1g27080 FvH4_1g27080 FvH4_1g27080 FvH4_1g27080
malus_domestica	MD09G1284000.v1.1
prunus_persica	Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1
pyrus_communis	pycom09g19190 pycom17g27490
rosa_chinensis	RchiOBHm_Chr3g0487401
rosa_laevigata	RLG00000023007
rosa_multiflora	Rmu_co8482639.1_g000001 Rmu_sc0001955.1_g000002
rosa_roxburghii	Rroxscaffold_6G00394810
rosa_rugosa	Rorug03G0233700
rosa_samantha	Rh3AG281800 Rh3BG317400 Rh3CG315500 Rh3DG313400
rosa_wichuraiana	Rw3G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	41
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	157
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	366
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	5 cut(s)	101, 160, 173, 299, 406
AluI	AGCT	5 cut(s)	101, 160, 173, 299, 406
Alw26I	GTCTC	2 cut(s)	387, 392
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	3 cut(s)	170, 299, 302
BaeI	ACNNNNGTAYC	2 cut(s)	340, 373
BauI	CACGAG	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	182, 286, 289
BceAI	ACGGC	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	387, 392
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	3 cut(s)	171, 300, 303
BlsI	GCNGC	3 cut(s)	172, 301, 304
BmiI	GGNNCC	2 cut(s)	6, 51
BmsI	GCATC	3 cut(s)	115, 187, 210
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpmI	CTGGAG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	35
BsaXI	ACNNNNNCTCC	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	35
BseGI	GGATG	1 cut(s)	225
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMII	CTCAG	4 cut(s)	18, 60, 120, 243
BseXI	GCAGC	3 cut(s)	182, 286, 289
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	2 cut(s)	387, 392
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	370
Bsp143I	GATC	4 cut(s)	36, 90, 149, 207
Bsp68I	TCGCGA	1 cut(s)	41
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	4 cut(s)	19, 61, 121, 244
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	6, 51
BspPI	GGATC	1 cut(s)	157
BssMI	GATC	4 cut(s)	36, 90, 149, 207
BssSI	CACGAG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	5 cut(s)	27, 69, 129, 252, 402
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	4 cut(s)	39, 93, 152, 210
BstMAI	GTCTC	2 cut(s)	387, 392
BstMBI	GATC	4 cut(s)	36, 90, 149, 207
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 134
BstNSI	RCATGY	1 cut(s)	194
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	182, 286, 289
BstX2I	RGATCY	2 cut(s)	149, 207
BstYI	RGATCY	2 cut(s)	149, 207
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	225
BtuMI	TCGCGA	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	2 cut(s)	178, 191
CviJI	RGCY	8 cut(s)	5, 50, 101, 160, 173, 299, 370, 406
CviKI_1	RGCY	8 cut(s)	5, 50, 101, 160, 173, 299, 370, 406
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	5 cut(s)	27, 69, 129, 252, 402
DpnI	GATC	4 cut(s)	38, 92, 151, 209
DpnII	GATC	4 cut(s)	36, 90, 149, 207
EciI	GGCGGA	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	225
FaeI	CATG	2 cut(s)	181, 194
FaiI	YATR	5 cut(s)	179, 192, 215, 225, 296
FatI	CATG	2 cut(s)	177, 190
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	3 cut(s)	171, 300, 303
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	171, 300, 303
GluI	GCNGC	3 cut(s)	171, 300, 303
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	370
Hin1II	CATG	2 cut(s)	181, 194
Hpy166II	GTNNAC	2 cut(s)	328, 430
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	3 cut(s)	40, 205, 388
Hpy8I	GTNNAC	2 cut(s)	328, 430
HpyAV	CCTTC	1 cut(s)	176
HpyCH4V	TGCA	4 cut(s)	137, 223, 260, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 134
HpyF3I	CTNAG	5 cut(s)	27, 69, 129, 252, 402
Hsp92II	CATG	2 cut(s)	181, 194
Kzo9I	GATC	4 cut(s)	36, 90, 149, 207
LmnI	GCTCC	3 cut(s)	10, 55, 98
LpnPI	CCDG	3 cut(s)	70, 218, 384
Lsp1109I	GCAGC	3 cut(s)	182, 286, 289
LweI	GCATC	3 cut(s)	115, 187, 210
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	4 cut(s)	38, 92, 151, 209
MboI	GATC	4 cut(s)	36, 90, 149, 207
MboII	GAAGA	8 cut(s)	6, 9, 12, 51, 54, 96, 99, 331
MflI	RGATCY	2 cut(s)	149, 207
MluCI	AATT	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	4 cut(s)	127, 247, 259, 453
Mph1103I	ATGCAT	1 cut(s)	225
MseI	TTAA	2 cut(s)	33, 410
MslI	CAYNNNNRTG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	139
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	47, 134
NdeII	GATC	4 cut(s)	36, 90, 149, 207
NlaIII	CATG	2 cut(s)	181, 194
NlaIV	GGNNCC	2 cut(s)	6, 51
NmeAIII	GCCGAG	1 cut(s)	141
NruI	TCGCGA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	225
NspI	RCATGY	1 cut(s)	194
PciI	ACATGT	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	172, 301, 304
PscI	ACATGT	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	6, 51
PsuI	RGATCY	2 cut(s)	149, 207
RruI	TCGCGA	1 cut(s)	41
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	33, 410
SatI	GCNGC	3 cut(s)	171, 300, 303
Sau3AI	GATC	4 cut(s)	36, 90, 149, 207
SetI	ASST	7 cut(s)	103, 162, 175, 251, 258, 301, 408
SfaNI	GCATC	3 cut(s)	115, 187, 210
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	147
TasI	AATT	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	33, 410
Tru9I	TTAA	2 cut(s)	33, 410
TseI	GCWGC	3 cut(s)	170, 299, 302
TspGWI	ACGGA	2 cut(s)	42, 111
XceI	RCATGY	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.