FvH4_1g27080

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
18852794 .. 18856247
3454 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27080.t1

Sequence Viewer

Length: 1251 bp
ATGGAATGGATGGAGTTTAGGAAGATAAATTATTCGTTGCCTGACTATGCGGTACGATTGGATCTCACGGCCAAAGCCAAAGGGATAGAGGCGGCAGAGAGTTACTTCAGCAACCTACCGCAGTCTGCCAAGAACAAATTGACTTATGGGTCCCTTTTGAACTGTTATTGCAAGGAAGTGATGGAAGAAAAGGCTTTGGCGCTCTATAAGAAGATGGATGAGTTGAACTATGTTGACTCTGCTCTGGTTTTCAACAATCTCATGGCTCTGTATATGAGAAAGAAGCAGCCGGAGAAGGTGGCTCCTTTCGTAGAGGAAATGAAGCGGAGGGAGATACGTTTGGATACTTTTAGTTATAATATCTGGATGCAGAGCTATGCCTCTTTGAATGATATGAAAGGCGTAGAGAGTGTTGTGGAAGAGATGCAAAGCCAAGATGAAGACGAATGTGATTGGTCAACATATAGTAACCTGGCTTCCATCTATGTAAAGGCGCAGCTTTATGAGAAGGCTGAGGTAGCTCTTAAATTGTCTGAGAAAGTGATGATGTCCGGGAAGCCACAGCGCCAGACGTACCATTTCTTGATTACACTCTATGCCAACACTGGTAATCTAGGTGAGGTCAAAAGAATATGGGAATCCCTCAAGTTAGCTTTTCCGGATACCAACAATATCAGCTATCTTCTTGTGGTTCAAGCGCTATGTAAGCTAAAAGATGTGGAGGGTTTGAAAGAATGCTTTGAGGAGTGGCAGTCTAATTGCTCCAGTTATGATATGAGGTTAGCAAACGTTGTTATACGTGCTTATCTGAGTCAGAACATGTATGAAGAAGCGCTGTTGATCTTTAAGGATGCTACTAAGAGGTGTAGAGGGCCTTTTTTCAAGGCTCGGGAAATCTTCATGGCCTACTTCTTGGATAATCGTCAGCCTGATCTGGCCATTAGCTATTTGGAAGAAGCGATTTTAGAAACCAAGGATGACGAATGGCGTCCATCTCCAGAAACCATTGCTGCATTTCTGAATTATTTTGAGGAAACAAAAGATATTGATAGTGCTGAGAACTTTTGCAAGATTCTGAAGCGTCTAAATTGTCTCAGTTCCAATGAGTATTGTTTGTTGCTTAAGGTTTATGTAGCTGCTGGTGAATTCCTTCCTGAGATATGTCAGAGATTGAAGGAAGACAACATTCAAATAAGCCCCGAGCTCGAGGAATTGGTAGAGAAGGTTTCCCCAAGCAGATCAACAACATAG

Protein Analysis

417

Amino Acids

48.42

Weight (kDa)

4.99

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 82 - 127 8.6e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AasI GACNNNNNNGTC 1 cut(s) 148
AccIII TCCGGA 1 cut(s) 658
AciI CCGC 4 cut(s) 50, 92, 119, 325
AclI AACGTT 1 cut(s) 789
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 2 cut(s) 69, 936
AcsI RAATTY 1 cut(s) 1145
AcuI CTGAAG 2 cut(s) 91, 1097
AcyI GRCGYC 1 cut(s) 988
AfaI GTAC 2 cut(s) 54, 575
AfeI AGCGCT 2 cut(s) 699, 834
AflII CTTAAG 1 cut(s) 1121
AflIII ACRYGT 1 cut(s) 819
AgsI TTSAA 9 cut(s) 160, 226, 253, 388, 695, 730, 883, 1174, 1190
AjnI CCWGG 1 cut(s) 471
AluBI AGCT 9 cut(s) 375, 499, 521, 653, 678, 709, 945, 1136, 1204
AluI AGCT 9 cut(s) 375, 499, 521, 653, 678, 709, 945, 1136, 1204
Alw21I GWGCWC 1 cut(s) 1206
Alw26I GTCTC 1 cut(s) 1097
AlwI GGATC 1 cut(s) 69
Ama87I CYCGRG 3 cut(s) 888, 1199, 1205
Aor13HI TCCGGA 1 cut(s) 658
Aor51HI AGCGCT 2 cut(s) 699, 834
AoxI GGCC 4 cut(s) 69, 872, 903, 936
ApeKI GCWGC 4 cut(s) 286, 496, 1010, 1136
ApoI RAATTY 1 cut(s) 1145
Asp700I GAANNNNTTC 1 cut(s) 1149
AspLEI GCGC 5 cut(s) 202, 496, 567, 700, 835
AspS9I GGNCC 2 cut(s) 150, 872
AsuC2I CCSGG 1 cut(s) 553
AsuHPI GGTGA 2 cut(s) 629, 1154
AvaI CYCGRG 3 cut(s) 888, 1199, 1205
AvaII GGWCC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 938
BanII GRGCYC 1 cut(s) 1206
BarI GAAGNNNNNNTAC 2 cut(s) 460, 492
BbsI GAAGAC 2 cut(s) 447, 1185
Bbv12I GWGCWC 1 cut(s) 1206
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 4 cut(s) 298, 508, 997, 1123
BccI CCATC 5 cut(s) 4, 175, 208, 488, 1000
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 473
BciVI GTATCC 2 cut(s) 337, 655
BcnI CCSGG 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 1097
BfaI CTAG 1 cut(s) 614
BfoI RGCGCY 4 cut(s) 203, 568, 701, 836
BfrI CTTAAG 1 cut(s) 1121
BfuI GTATCC 2 cut(s) 337, 655
BisI GCNGC 5 cut(s) 93, 287, 497, 1011, 1137
BlsI GCNGC 5 cut(s) 94, 288, 498, 1012, 1138
Bme1390I CCNGG 2 cut(s) 473, 553
Bme18I GGWCC 1 cut(s) 150
BmeT110I CYCGRG 3 cut(s) 888, 1199, 1205
BmgT120I GGNCC 2 cut(s) 150, 872
BmiI GGNNCC 3 cut(s) 151, 152, 303
BmrFI CCNGG 2 cut(s) 473, 553
BmsI GCATC 3 cut(s) 357, 414, 841
BpiI GAAGAC 2 cut(s) 447, 1185
BpmI CTGGAG 2 cut(s) 748, 981
Bpu10I CCTNAGC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 629
BpuMI CCSGG 1 cut(s) 553
BsaAI YACGTR 1 cut(s) 800
BsaHI GRCGYC 1 cut(s) 988
BsaJI CCNNGG 1 cut(s) 972
BsaWI WCCGGW 1 cut(s) 658
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bse1I ACTGG 2 cut(s) 610, 765
Bse3DI GCAATG 1 cut(s) 1005
BseAI TCCGGA 1 cut(s) 658
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 1 cut(s) 972
BseGI GGATG 5 cut(s) 15, 223, 372, 856, 982
BseMI GCAATG 1 cut(s) 1005
BseMII CTCAG 6 cut(s) 504, 525, 800, 1047, 1108, 1146
BseNI ACTGG 2 cut(s) 610, 765
BseRI GAGGAG 1 cut(s) 758
BseXI GCAGC 4 cut(s) 298, 508, 997, 1123
BshFI GGCC 4 cut(s) 71, 874, 905, 938
BsiHKAI GWGCWC 1 cut(s) 1206
BsiHKCI CYCGRG 3 cut(s) 888, 1199, 1205
BsiSI CCGG 3 cut(s) 290, 552, 659
BslFI GGGAC 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 1097
BsmFI GGGAC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 4 cut(s) 71, 874, 905, 938
BsoBI CYCGRG 3 cut(s) 888, 1199, 1205
Bsp1286I GDGCHC 1 cut(s) 1206
Bsp13I TCCGGA 1 cut(s) 658
Bsp143I GATC 4 cut(s) 61, 840, 931, 1238
BspACI CCGC 4 cut(s) 50, 92, 119, 325
BspANI GGCC 4 cut(s) 71, 874, 905, 938
BspCNI CTCAG 6 cut(s) 505, 526, 801, 1048, 1107, 1147
BspEI TCCGGA 1 cut(s) 658
BspLI GGNNCC 3 cut(s) 151, 152, 303
BspPI GGATC 1 cut(s) 69
BspTI CTTAAG 1 cut(s) 1121
BsrDI GCAATG 1 cut(s) 1005
BsrI ACTGG 2 cut(s) 610, 765
BssECI CCNNGG 1 cut(s) 972
BssMI GATC 4 cut(s) 61, 840, 931, 1238
BssNI GRCGYC 1 cut(s) 988
BssT1I CCWWGG 1 cut(s) 972
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 414
BstACI GRCGYC 1 cut(s) 988
BstAFI CTTAAG 1 cut(s) 1121
BstBAI YACGTR 1 cut(s) 800
BstDEI CTNAG 7 cut(s) 513, 534, 809, 858, 1056, 1094, 1155
BstF5I GGATG 5 cut(s) 15, 223, 372, 856, 982
BstH2I RGCGCY 4 cut(s) 203, 568, 701, 836
BstHHI GCGC 5 cut(s) 202, 496, 567, 700, 835
BstKTI GATC 4 cut(s) 64, 843, 934, 1241
BstMAI GTCTC 1 cut(s) 1097
BstMBI GATC 4 cut(s) 61, 840, 931, 1238
BstMWI GCNNNNNNNGC 2 cut(s) 518, 706
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 1 cut(s) 823
BstSCI CCNGG 2 cut(s) 471, 551
BstV1I GCAGC 4 cut(s) 298, 508, 997, 1123
BstV2I GAAGAC 2 cut(s) 447, 1185
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuI GTATCC 2 cut(s) 337, 655
BsuRI GGCC 4 cut(s) 71, 874, 905, 938
BtsCI GGATG 5 cut(s) 15, 223, 372, 856, 982
BtsIMutI CAGTG 1 cut(s) 603
CfoI GCGC 5 cut(s) 202, 496, 567, 700, 835
Cfr13I GGNCC 2 cut(s) 150, 872
CseI GACGC 2 cut(s) 977, 1070
Csp6I GTAC 2 cut(s) 53, 574
CviAII CATG 3 cut(s) 262, 820, 901
CviQI GTAC 2 cut(s) 53, 574
DdeI CTNAG 7 cut(s) 513, 534, 809, 858, 1056, 1094, 1155
DpnI GATC 4 cut(s) 63, 842, 933, 1240
DpnII GATC 4 cut(s) 61, 840, 931, 1238
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 2 cut(s) 69, 936
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Ecl136II GAGCTC 1 cut(s) 1204
Eco130I CCWWGG 1 cut(s) 972
Eco24I GRGCYC 1 cut(s) 1206
Eco47I GGWCC 1 cut(s) 150
Eco47III AGCGCT 2 cut(s) 699, 834
Eco53kI GAGCTC 1 cut(s) 1204
Eco57I CTGAAG 2 cut(s) 91, 1097
Eco88I CYCGRG 3 cut(s) 888, 1199, 1205
EcoICRI GAGCTC 1 cut(s) 1204
EcoO109I RGGNCCY 2 cut(s) 150, 872
EcoRI GAATTC 1 cut(s) 1145
EcoRII CCWGG 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 972
EcoT38I GRGCYC 1 cut(s) 1206
ErhI CCWWGG 1 cut(s) 972
FaeI CATG 3 cut(s) 265, 823, 904
FaqI GGGAC 1 cut(s) 136
FatI CATG 3 cut(s) 261, 819, 900
Fnu4HI GCNGC 5 cut(s) 93, 287, 497, 1011, 1137
FokI GGATG 5 cut(s) 22, 230, 379, 863, 989
FriOI GRGCYC 1 cut(s) 1206
Fsp4HI GCNGC 5 cut(s) 93, 287, 497, 1011, 1137
FspBI CTAG 1 cut(s) 614
GlaI GCGC 5 cut(s) 201, 495, 566, 699, 834
GluI GCNGC 5 cut(s) 93, 287, 497, 1011, 1137
GsuI CTGGAG 2 cut(s) 748, 981
HaeII RGCGCY 4 cut(s) 203, 568, 701, 836
HaeIII GGCC 4 cut(s) 71, 874, 905, 938
HapII CCGG 3 cut(s) 290, 552, 659
HgaI GACGC 2 cut(s) 977, 1070
HhaI GCGC 5 cut(s) 202, 496, 567, 700, 835
Hin1I GRCGYC 1 cut(s) 988
Hin1II CATG 3 cut(s) 265, 823, 904
Hin6I GCGC 5 cut(s) 200, 494, 565, 698, 833
HinP1I GCGC 5 cut(s) 200, 494, 565, 698, 833
HincII GTYRAC 2 cut(s) 235, 459
HindII GTYRAC 2 cut(s) 235, 459
HinfI GANTC 4 cut(s) 236, 638, 811, 1072
HpaII CCGG 3 cut(s) 290, 552, 659
HphI GGTGA 2 cut(s) 629, 1154
Hpy166II GTNNAC 2 cut(s) 235, 459
Hpy188I TCNGA 6 cut(s) 535, 810, 816, 1020, 1077, 1167
Hpy188III TCNNGA 6 cut(s) 364, 583, 659, 890, 998, 1154
Hpy8I GTNNAC 2 cut(s) 235, 459
HpyAV CCTTC 5 cut(s) 289, 502, 1160, 1168, 1216
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 4 cut(s) 337, 572, 789, 799
HpyCH4V TGCA 5 cut(s) 171, 370, 427, 1013, 1068
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 706
HpyF3I CTNAG 7 cut(s) 513, 534, 809, 858, 1056, 1094, 1155
HpySE526I ACGT 4 cut(s) 337, 572, 789, 799
Hsp92I GRCGYC 1 cut(s) 988
Hsp92II CATG 3 cut(s) 265, 823, 904
HspAI GCGC 5 cut(s) 200, 494, 565, 698, 833
KflI GGGWCCC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 658
Kzo9I GATC 4 cut(s) 61, 840, 931, 1238
LmnI GCTCC 2 cut(s) 307, 767
Lsp1109I GCAGC 4 cut(s) 298, 508, 997, 1123
LweI GCATC 3 cut(s) 357, 414, 841
MaeI CTAG 1 cut(s) 614
MaeII ACGT 4 cut(s) 337, 572, 789, 799
MaeIII GTNAC 2 cut(s) 101, 467
MalI GATC 4 cut(s) 63, 842, 933, 1240
MboI GATC 4 cut(s) 61, 840, 931, 1238
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 1206
MlsI TGGCCA 1 cut(s) 938
MluCI AATT 8 cut(s) 28, 137, 527, 757, 1021, 1087, 1145, 1211
MluNI TGGCCA 1 cut(s) 938
MlyI GAGTC 2 cut(s) 230, 820
Mox20I TGGCCA 1 cut(s) 938
MroI TCCGGA 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 1149
MscI TGGCCA 1 cut(s) 938
MseI TTAA 3 cut(s) 525, 846, 1122
Msp20I TGGCCA 1 cut(s) 938
MspCI CTTAAG 1 cut(s) 1121
MspI CCGG 3 cut(s) 290, 552, 659
MspR9I CCNGG 2 cut(s) 473, 553
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 518, 706
NciI CCSGG 1 cut(s) 553
NdeII GATC 4 cut(s) 61, 840, 931, 1238
NlaIII CATG 3 cut(s) 265, 823, 904
NlaIV GGNNCC 3 cut(s) 151, 152, 303
NspI RCATGY 1 cut(s) 823
PaeR7I CTCGAG 1 cut(s) 1205
PciI ACATGT 1 cut(s) 819
PctI GAATGC 1 cut(s) 740
PdmI GAANNNNTTC 1 cut(s) 1149
PfeI GAWTC 2 cut(s) 638, 1072
PfoI TCCNGGA 1 cut(s) 551
PkrI GCNGC 5 cut(s) 94, 288, 498, 1012, 1138
PleI GAGTC 2 cut(s) 230, 819
PpsI GAGTC 2 cut(s) 230, 819
Ppu21I YACGTR 1 cut(s) 800
PpuMI RGGWCCY 1 cut(s) 150
PscI ACATGT 1 cut(s) 819
PsiI TTATAA 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 1206
Psp1406I AACGTT 1 cut(s) 789
Psp5II RGGWCCY 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 3 cut(s) 151, 152, 303
PspPI GGNCC 2 cut(s) 150, 872
PspPPI RGGWCCY 1 cut(s) 150
PspXI VCTCGAGB 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 2 cut(s) 54, 575
RsaNI GTAC 2 cut(s) 53, 574
SacI GAGCTC 1 cut(s) 1206
SaqAI TTAA 3 cut(s) 525, 846, 1122
SatI GCNGC 5 cut(s) 93, 287, 497, 1011, 1137
Sau3AI GATC 4 cut(s) 61, 840, 931, 1238
Sau96I GGNCC 2 cut(s) 150, 872
SchI GAGTC 2 cut(s) 230, 820
ScrFI CCNGG 2 cut(s) 473, 553
SduI GDGCHC 1 cut(s) 1206
SfaNI GCATC 3 cut(s) 357, 414, 841
Sfr274I CTCGAG 1 cut(s) 1205
SinI GGWCC 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 1205
SmlI CTYRAG 3 cut(s) 644, 1121, 1205
SmoI CTYRAG 3 cut(s) 644, 1121, 1205
Sse9I AATT 8 cut(s) 28, 137, 527, 757, 1021, 1087, 1145, 1211
SsiI CCGC 4 cut(s) 50, 92, 119, 325
SspMI CTAG 1 cut(s) 614
SstI GAGCTC 1 cut(s) 1206
StyD4I CCNGG 2 cut(s) 471, 551
StyI CCWWGG 1 cut(s) 972
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 4 cut(s) 340, 575, 792, 802
TaqI TCGA 1 cut(s) 1206
TasI AATT 8 cut(s) 28, 137, 527, 757, 1021, 1087, 1145, 1211
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 2 cut(s) 638, 1072
Tru1I TTAA 3 cut(s) 525, 846, 1122
Tru9I TTAA 3 cut(s) 525, 846, 1122
TscAI CASTG 1 cut(s) 610
TseI GCWGC 4 cut(s) 286, 496, 1010, 1136
TspDTI ATGAA 5 cut(s) 335, 410, 453, 840, 889
TspRI CASTG 1 cut(s) 610
Vha464I CTTAAG 1 cut(s) 1121
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 1 cut(s) 1145
XceI RCATGY 1 cut(s) 823
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 1205
XmnI GAANNNNTTC 1 cut(s) 1149
XspI CTAG 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.