Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8482639.1

Orthogroup ID

OG0006200

Physical Location & Seq

Genomic Coordinates Reverse (-)

1050 .. 2117

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8482639.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atggaagagaaggcattggcgctttatcagaagatggatgagttggaccatgctaactctactctggtttttaacaatctcatgtctttgtatatgagaaaggagcggccggagaaagtggcgcctttcgtagagcaaatgaagcagagggagatatctttagatacgtttagttacaatatctggatgcagagctatgcctctttgaatgatattgaaggcgtggagagagttgtggaagagatgcaaagccaagatcaagacaaatgcaactggtcaacatatagtaatctggcttccatctatgtaaaggcgcagctttttgagaaggctgagctagcgcttaaaatgtcggagaaaatgatgataccgctgaagcagcgccagacataccatttcttgattaccctctacgccaacactggtaatctaggtgaggtcaaaagaatatgggaatccctcaagttagctttcccagaaaccaccaatatgagctatatacttatgcttcaagctctatgtaagctaaaagatattgagggtttaaaagaatgctttgaggagtggcagtccaattgttccagttatgatatgaggttagcaaatgtagttatacgtgcttatcttagtcaggacatgtatgaagaagcgctgttgatctttaaggatgctactaagaggtctaaagggcctttcttcaaggctcgagaaatgttcatggtttacttcttggatgcccgtcaggttgattcggccattagctatttgggagaggcaatttcagaaaccaaggatgagaattggcatccgtctccagaaatcattggtgcattttttaagtattttgaggaaacaaaagatgttgatagctctgaaaactttcataagattctgaagcgtctaaattgtctcagttccaatgagtattctttgttgcttaaggtttatctagctgctggtgaattgcttcctgagatatgtcagagattgaaggaagacaacattcaaataagccccgagcttgaggaattggtggagagggtttccccaagtagatcgacagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

355

Amino Acids

41.44

Weight (kDa)

5.04

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02370 AT1G11470 AT4G01990
fragaria_vesca	FvH4_1g27080 FvH4_1g27080 FvH4_1g27080 FvH4_1g27080
malus_domestica	MD09G1284000.v1.1
prunus_persica	Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1
pyrus_communis	pycom09g19190 pycom17g27490
rosa_chinensis	RchiOBHm_Chr3g0487401
rosa_laevigata	RLG00000023007
rosa_multiflora	Rmu_co8482639.1_g000001 Rmu_sc0001955.1_g000002
rosa_roxburghii	Rroxscaffold_6G00394810
rosa_rugosa	Rorug03G0233700
rosa_samantha	Rh3AG281800 Rh3BG317400 Rh3CG315500 Rh3DG313400
rosa_wichuraiana	Rw3G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AccBSI	CCGCTC	1 cut(s)	106
AciI	CCGC	2 cut(s)	106, 371
AcoI	YGGCCR	2 cut(s)	107, 753
AcuI	CTGAAG	2 cut(s)	395, 914
AcyI	GRCGYC	1 cut(s)	122
AfeI	AGCGCT	2 cut(s)	342, 651
AflII	CTTAAG	1 cut(s)	938
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	6 cut(s)	208, 218, 512, 700, 991, 1007
Alw26I	GTCTC	2 cut(s)	816, 914
Ama87I	CYCGRG	2 cut(s)	705, 1016
Aor51HI	AGCGCT	2 cut(s)	342, 651
AoxI	GGCC	3 cut(s)	107, 689, 753
ApeKI	GCWGC	3 cut(s)	316, 379, 953
Asp700I	GAANNNNTTC	2 cut(s)	879, 966
AspLEI	GCGC	6 cut(s)	22, 124, 316, 343, 384, 652
AspS9I	GGNCC	2 cut(s)	46, 689
AsuHPI	GGTGA	2 cut(s)	446, 971
AsuNHI	GCTAGC	1 cut(s)	337
AvaI	CYCGRG	2 cut(s)	705, 1016
AvaII	GGWCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	280, 312
BbsI	GAAGAC	1 cut(s)	1002
BbvI	GCAGC	3 cut(s)	328, 391, 940
BccI	CCATC	2 cut(s)	28, 308
BcoDI	GTCTC	2 cut(s)	816, 914
BfaI	CTAG	3 cut(s)	338, 431, 950
BfoI	RGCGCY	5 cut(s)	23, 125, 344, 385, 653
BfrI	CTTAAG	1 cut(s)	938
BisI	GCNGC	4 cut(s)	107, 317, 380, 954
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	4 cut(s)	108, 318, 381, 955
Bme18I	GGWCC	1 cut(s)	46
BmeT110I	CYCGRG	2 cut(s)	705, 1016
BmgT120I	GGNCC	2 cut(s)	46, 689
BmiI	GGNNCC	1 cut(s)	123
BmsI	GCATC	5 cut(s)	177, 234, 658, 724, 814
BmtI	GCTAGC	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	1002
BpmI	CTGGAG	1 cut(s)	798
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	446, 1043
BsaAI	YACGTR	1 cut(s)	617
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	789
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bse1I	ACTGG	3 cut(s)	278, 427, 582
BseDI	CCNNGG	1 cut(s)	789
BseGI	GGATG	6 cut(s)	43, 192, 673, 739, 799, 805
BseMII	CTCAG	3 cut(s)	324, 925, 963
BseNI	ACTGG	3 cut(s)	278, 427, 582
BseRI	GAGGAG	1 cut(s)	575
BseX3I	CGGCCG	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	328, 391, 940
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	3 cut(s)	109, 691, 755
BshNI	GGYRCC	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	110
BsiHKCI	CYCGRG	2 cut(s)	705, 1016
BsiSI	CCGG	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	816, 914
BsmBI	CGTCTC	1 cut(s)	816
BsmI	GAATGC	1 cut(s)	557
BsnI	GGCC	3 cut(s)	109, 691, 755
BsoBI	CYCGRG	2 cut(s)	705, 1016
Bsp143I	GATC	3 cut(s)	256, 657, 1055
Bsp1720I	GCTNAGC	1 cut(s)	333
BspACI	CCGC	2 cut(s)	106, 371
BspANI	GGCC	3 cut(s)	109, 691, 755
BspCNI	CTCAG	3 cut(s)	325, 924, 964
BspLI	GGNNCC	1 cut(s)	123
BspOI	GCTAGC	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	121
BspTI	CTTAAG	1 cut(s)	938
BsrBI	CCGCTC	1 cut(s)	106
BsrI	ACTGG	3 cut(s)	278, 427, 582
BssECI	CCNNGG	1 cut(s)	789
BssMI	GATC	3 cut(s)	256, 657, 1055
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	789
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	938
BstBAI	YACGTR	1 cut(s)	617
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	5 cut(s)	333, 626, 675, 911, 972
BstF5I	GGATG	6 cut(s)	43, 192, 673, 739, 799, 805
BstH2I	RGCGCY	5 cut(s)	23, 125, 344, 385, 653
BstHHI	GCGC	6 cut(s)	22, 124, 316, 343, 384, 652
BstKTI	GATC	3 cut(s)	259, 660, 1058
BstMAI	GTCTC	2 cut(s)	816, 914
BstMBI	GATC	3 cut(s)	256, 657, 1055
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 338, 379
BstNSI	RCATGY	1 cut(s)	640
BstV1I	GCAGC	3 cut(s)	328, 391, 940
BstV2I	GAAGAC	1 cut(s)	1002
BstZI	CGGCCG	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	109, 691, 755
BtsCI	GGATG	6 cut(s)	43, 192, 673, 739, 799, 805
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	339
CfoI	GCGC	6 cut(s)	22, 124, 316, 343, 384, 652
Cfr13I	GGNCC	2 cut(s)	46, 689
CseI	GACGC	1 cut(s)	887
CviAII	CATG	4 cut(s)	50, 82, 637, 718
DdeI	CTNAG	5 cut(s)	333, 626, 675, 911, 972
DinI	GGCGCC	1 cut(s)	123
DpnI	GATC	3 cut(s)	258, 659, 1057
DpnII	GATC	3 cut(s)	256, 657, 1055
DraI	TTTAAA	1 cut(s)	546
EaeI	YGGCCR	2 cut(s)	107, 753
EagI	CGGCCG	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EclXI	CGGCCG	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	789
Eco32I	GATATC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	46
Eco47III	AGCGCT	2 cut(s)	342, 651
Eco52I	CGGCCG	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	395, 914
Eco88I	CYCGRG	2 cut(s)	705, 1016
EcoO109I	RGGNCCY	1 cut(s)	689
EcoRV	GATATC	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	789
EgeI	GGCGCC	1 cut(s)	123
EheI	GGCGCC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	789
Esp3I	CGTCTC	1 cut(s)	816
FaeI	CATG	4 cut(s)	53, 85, 640, 721
FatI	CATG	4 cut(s)	49, 81, 636, 717
Fnu4HI	GCNGC	4 cut(s)	107, 317, 380, 954
FokI	GGATG	6 cut(s)	50, 199, 680, 746, 792, 806
Fsp4HI	GCNGC	4 cut(s)	107, 317, 380, 954
FspBI	CTAG	3 cut(s)	338, 431, 950
GlaI	GCGC	6 cut(s)	21, 123, 315, 342, 383, 651
GluI	GCNGC	4 cut(s)	107, 317, 380, 954
GsuI	CTGGAG	1 cut(s)	798
HaeII	RGCGCY	5 cut(s)	23, 125, 344, 385, 653
HaeIII	GGCC	3 cut(s)	109, 691, 755
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	887
HhaI	GCGC	6 cut(s)	22, 124, 316, 343, 384, 652
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	53, 85, 640, 721
Hin6I	GCGC	6 cut(s)	20, 122, 314, 341, 382, 650
HinP1I	GCGC	6 cut(s)	20, 122, 314, 341, 382, 650
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	3 cut(s)	455, 749, 889
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	2 cut(s)	446, 971
Hpy166II	GTNNAC	2 cut(s)	279, 724
Hpy188I	TCNGA	6 cut(s)	30, 355, 784, 874, 894, 984
Hpy188III	TCNNGA	7 cut(s)	184, 260, 400, 632, 707, 815, 971
Hpy8I	GTNNAC	2 cut(s)	279, 724
HpyAV	CCTTC	4 cut(s)	4, 212, 322, 985
HpyCH4IV	ACGT	2 cut(s)	167, 616
HpyCH4V	TGCA	4 cut(s)	190, 247, 270, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 338, 379
HpyF3I	CTNAG	5 cut(s)	333, 626, 675, 911, 972
HpySE526I	ACGT	2 cut(s)	167, 616
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	4 cut(s)	53, 85, 640, 721
HspAI	GCGC	6 cut(s)	20, 122, 314, 341, 382, 650
KasI	GGCGCC	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	256, 657, 1055
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	3 cut(s)	328, 391, 940
LweI	GCATC	5 cut(s)	177, 234, 658, 724, 814
MaeI	CTAG	3 cut(s)	338, 431, 950
MaeII	ACGT	2 cut(s)	167, 616
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	3 cut(s)	258, 659, 1057
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	3 cut(s)	256, 657, 1055
MboII	GAAGA	6 cut(s)	17, 43, 251, 656, 688, 1007
MfeI	CAATTG	1 cut(s)	574
MluCI	AATT	6 cut(s)	574, 777, 799, 904, 962, 1028
Mly113I	GGCGCC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	24, 333
MroXI	GAANNNNTTC	2 cut(s)	879, 966
MseI	TTAA	6 cut(s)	72, 345, 545, 663, 837, 939
MslI	CAYNNNNRTG	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	373
MspCI	CTTAAG	1 cut(s)	938
MspI	CCGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	574
Mva1269I	GAATGC	1 cut(s)	557
MwoI	GCNNNNNNNGC	3 cut(s)	142, 338, 379
NarI	GGCGCC	1 cut(s)	122
NdeII	GATC	3 cut(s)	256, 657, 1055
NheI	GCTAGC	1 cut(s)	337
NlaIII	CATG	4 cut(s)	53, 85, 640, 721
NlaIV	GGNNCC	1 cut(s)	123
NspI	RCATGY	1 cut(s)	640
PaeR7I	CTCGAG	1 cut(s)	705
PciI	ACATGT	1 cut(s)	636
PctI	GAATGC	1 cut(s)	557
PdmI	GAANNNNTTC	2 cut(s)	879, 966
PfeI	GAWTC	3 cut(s)	455, 749, 889
PkrI	GCNGC	4 cut(s)	108, 318, 381, 955
PluTI	GGCGCC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	617
PscI	ACATGT	1 cut(s)	636
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	46, 689
RseI	CAYNNNNRTG	1 cut(s)	488
SaqAI	TTAA	6 cut(s)	72, 345, 545, 663, 837, 939
SatI	GCNGC	4 cut(s)	107, 317, 380, 954
Sau3AI	GATC	3 cut(s)	256, 657, 1055
Sau96I	GGNCC	2 cut(s)	46, 689
SfaNI	GCATC	5 cut(s)	177, 234, 658, 724, 814
SfoI	GGCGCC	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	705
SinI	GGWCC	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	705
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	4 cut(s)	461, 705, 938, 1022
SmoI	CTYRAG	4 cut(s)	461, 705, 938, 1022
Sse9I	AATT	6 cut(s)	574, 777, 799, 904, 962, 1028
SsiI	CCGC	2 cut(s)	106, 371
SspDI	GGCGCC	1 cut(s)	121
SspMI	CTAG	3 cut(s)	338, 431, 950
StyI	CCWWGG	1 cut(s)	789
TaiI	ACGT	2 cut(s)	170, 619
TaqI	TCGA	2 cut(s)	706, 1058
TasI	AATT	6 cut(s)	574, 777, 799, 904, 962, 1028
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	3 cut(s)	455, 749, 889
Tru1I	TTAA	6 cut(s)	72, 345, 545, 663, 837, 939
Tru9I	TTAA	6 cut(s)	72, 345, 545, 663, 837, 939
TscAI	CASTG	1 cut(s)	427
TseI	GCWGC	3 cut(s)	316, 379, 953
TspDTI	ATGAA	4 cut(s)	155, 657, 706, 872
TspGWI	ACGGA	1 cut(s)	798
TspRI	CASTG	1 cut(s)	427
Vha464I	CTTAAG	1 cut(s)	938
VpaK11BI	GGWCC	1 cut(s)	46
XceI	RCATGY	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	763
XhoI	CTCGAG	1 cut(s)	705
XmnI	GAANNNNTTC	2 cut(s)	879, 966
XspI	CTAG	3 cut(s)	338, 431, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.