Prupe.3G010700_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
678835 .. 682061
3227 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G010700.4

Sequence Viewer

Length: 1506 bp
ATGAATTCTAGCCGCTCGATATCCGCCGGCACTTGGCTGGTGAGGAAGCTTTGCACGGCGGTTGAGGCTGCGACGGAGTCGGCGCGGAGTCAGCCTGGAAATCCCAATAGGCTGTACCGGAGGCTATCGGCTTTGGGAGCCACCGGAGGCAGCGTGGCAAAGACGTTAAATCAGTACATTATGGAGGGCAAAATGTTGAAGAAGTACGAGCTCGAGAGGTGCATCAAGGAGCTCCGCAAGTACCGCAAGTTCCAGCATGCCTTAGAGATAATGGAATGGATGGAGTTTAGGAAAATGAATTACTCGAAAGCTGACTTTGCCATACGTTTGGATCTTACGTCCAAAGTGAAAGGGATAGAGGCAGCTGAGGATTACTTTAGCGGCCTCTCTCCGTCTTTAAAGGATCGATTTACTTACGGAGCCCTTTTGAACTGTTATTGCAAGGAACTGATGGAAGAAAAGGCATTGGCTCTTTATGAGACGATGGATGAGTTGGAGTTTGCTTCCTCTTCTTTGGTCTTTAACAATCTCATGTCTATGCATATGAGAAAGCAGCAACCAGAGAAAGTGGCTCCTTTAGTGCAAGAAATGAAGCAGAGGAACATCCCTCTGGACACATTTACGTATAACATCTGGATGCAGAGCTTTGCGTCTTTAAACGATTTTGAAGGAGCAGAAAGAGTCCTGGACGAGATGCAAAAACAAGATGGAAACCAATGCAGTTGGTCAACATATAGTAACCTGGCTGCGATTTATGTAAAGGCTAAGATTTTTGATAAGGCTGAGCTAGCCCTTAAAAAGTCGGAGGAAATGATGAAACCCCTGAAGCAGCGCAATACATACCATTTCTTGATTAGCCTCTATGCCTGCACTTCTAATCTAGGTGAGGTCAAAAGGGTATGGGAATCCCTCAAGAAAGCTTTCCCAGCAACCAACAATATGAGCTATCTTATCATGCTTCAGGCCCTCTGTAAGCTAAATGATATTGAGGGCTTGAAAGAATGTTTTGAGGAATGGGAGTGCAAATGCTCCAGTTATGATATGCGACTGGCAAATACTGCTATACGTGGTTACCTCAGTCAGGACATGTATGAAGAAGCTGCATTGGTCTTTGCAGATGCCTGTAAGAGGACTAAAGGGCCTTTCTTTAAGGCTCGGGAAATGTTCATGCTTTACTTCTTGAAAAACTGTCAGGTGGATTTGGCTGTTAGCTATTTGGGAGCGGCTGTTTCAGAAACCGCGGATGGGGAATGGCATCCATCCCCAGATACCACAAGTGCATTTTTTAAGTATTTTGAAGAAGAGAAAGATGTTGAAAGTGCTGAGAACTTTTGCAAGATTCTGAAGCGTCTAAATTGCCTCTGTTCCAATGAGTATTATTTGTTGCTTAAGACTTACATAGCTGCTGGGAAATTGGATCCTGAGATGCGTCAAAGATTGAAGGAAGAAGATATTGAAATAAGCCCCGAGCTTGAGAGTTTGCTTGAAAGGGTTTCCCCTGAGTAG

Protein Analysis

502

Amino Acids

57.82

Weight (kDa)

6.09

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 15, 1223
AccII CGCG 2 cut(s) 85, 1241
AclWI GGATC 4 cut(s) 339, 411, 1412, 1425
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 3 cut(s) 845, 944, 1364
AfaI GTAC 4 cut(s) 116, 176, 206, 242
AfiI CCNNNNNNNGG 4 cut(s) 33, 1081, 1128, 1245
AflII CTTAAG 1 cut(s) 1388
AflIII ACRYGT 1 cut(s) 1086
AjnI CCWGG 3 cut(s) 94, 684, 741
Alw21I GWGCWC 2 cut(s) 213, 234
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 4 cut(s) 339, 411, 1412, 1425
Ama87I CYCGRG 3 cut(s) 212, 1155, 1466
AoxI GGCC 3 cut(s) 382, 963, 1139
ApeKI GCWGC 8 cut(s) 68, 150, 362, 553, 746, 829, 1100, 1403
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 920
AspLEI GCGC 2 cut(s) 85, 834
AspS9I GGNCC 2 cut(s) 964, 1139
AsuHPI GGTGA 2 cut(s) 52, 896
AsuNHI GCTAGC 1 cut(s) 787
AvaI CYCGRG 3 cut(s) 212, 1155, 1466
BamHI GGATCC 1 cut(s) 1417
BanII GRGCYC 3 cut(s) 213, 234, 424
Bbv12I GWGCWC 2 cut(s) 213, 234
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 8 cut(s) 55, 162, 374, 565, 733, 841, 1087, 1390
BccI CCATC 6 cut(s) 274, 445, 478, 701, 1238, 1267
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 3 cut(s) 96, 686, 743
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 3 cut(s) 9, 788, 881
BfrI CTTAAG 1 cut(s) 1388
BlpI GCTNAGC 1 cut(s) 783
Bme1390I CCNGG 3 cut(s) 96, 686, 743
BmeT110I CYCGRG 3 cut(s) 212, 1155, 1466
BmgT120I GGNCC 2 cut(s) 964, 1139
BmiI GGNNCC 4 cut(s) 139, 421, 573, 1419
BmrFI CCNGG 3 cut(s) 96, 686, 743
BmsI GCATC 6 cut(s) 231, 627, 684, 1108, 1264, 1416
BmtI GCTAGC 1 cut(s) 791
BpmI CTGGAG 1 cut(s) 1015
Bpu10I CCTNAGC 1 cut(s) 366
Bpu1102I GCTNAGC 1 cut(s) 783
BpuEI CTTGAG 2 cut(s) 896, 1493
Bsa29I ATCGAT 1 cut(s) 406
BsaAI YACGTR 2 cut(s) 624, 1067
BsaJI CCNNGG 1 cut(s) 1239
BsaWI WCCGGW 2 cut(s) 117, 143
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 1212, 1242
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 1081, 1128, 1245
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 1032, 1053
BseBI CCWGG 3 cut(s) 96, 686, 743
BseCI ATCGAT 1 cut(s) 406
BseDI CCNNGG 1 cut(s) 1239
BseGI GGATG 7 cut(s) 285, 493, 603, 642, 1249, 1255, 1259
BseLI CCNNNNNNNGG 4 cut(s) 33, 1081, 1128, 1245
BseMII CTCAG 6 cut(s) 357, 774, 1090, 1314, 1413, 1491
BseNI ACTGG 2 cut(s) 1032, 1053
BseXI GCAGC 8 cut(s) 55, 162, 374, 565, 733, 841, 1087, 1390
BseYI CCCAGC 2 cut(s) 925, 1406
BsgI GTGCAG 1 cut(s) 853
Bsh1236I CGCG 2 cut(s) 85, 1241
BshFI GGCC 3 cut(s) 384, 965, 1141
BshVI ATCGAT 1 cut(s) 406
BsiHKAI GWGCWC 2 cut(s) 213, 234
BsiHKCI CYCGRG 3 cut(s) 212, 1155, 1466
BsiSI CCGG 3 cut(s) 27, 118, 144
BslI CCNNNNNNNGG 4 cut(s) 33, 1081, 1128, 1245
BsmAI GTCTC 1 cut(s) 473
BsmBI CGTCTC 1 cut(s) 473
BsnI GGCC 3 cut(s) 384, 965, 1141
BsoBI CYCGRG 3 cut(s) 212, 1155, 1466
Bsp1286I GDGCHC 3 cut(s) 213, 234, 424
Bsp143I GATC 3 cut(s) 331, 403, 1417
Bsp1720I GCTNAGC 1 cut(s) 783
BspANI GGCC 3 cut(s) 384, 965, 1141
BspCNI CTCAG 6 cut(s) 358, 775, 1089, 1315, 1414, 1492
BspDI ATCGAT 1 cut(s) 406
BspFNI CGCG 2 cut(s) 85, 1241
BspLI GGNNCC 4 cut(s) 139, 421, 573, 1419
BspOI GCTAGC 1 cut(s) 791
BspPI GGATC 4 cut(s) 339, 411, 1412, 1425
BspTI CTTAAG 1 cut(s) 1388
BsrBI CCGCTC 2 cut(s) 15, 1223
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 2 cut(s) 1032, 1053
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 1239
BssMI GATC 3 cut(s) 331, 403, 1417
Bst2UI CCWGG 3 cut(s) 96, 686, 743
Bst4CI ACNGT 2 cut(s) 434, 1190
Bst6I CTCTTC 2 cut(s) 514, 1296
BstAFI CTTAAG 1 cut(s) 1388
BstAPI GCANNNNNTGC 1 cut(s) 1058
BstBAI YACGTR 2 cut(s) 624, 1067
BstC8I GCNNGC 4 cut(s) 28, 258, 789, 868
BstDEI CTNAG 8 cut(s) 262, 366, 765, 783, 1076, 1323, 1422, 1500
BstDSI CCRYGG 1 cut(s) 1239
BstEII GGTNACC 1 cut(s) 1070
BstENI CCTNNNNNAGG 2 cut(s) 1079, 1126
BstF5I GGATG 7 cut(s) 285, 493, 603, 642, 1249, 1255, 1259
BstFNI CGCG 2 cut(s) 85, 1241
BstHHI GCGC 2 cut(s) 85, 834
BstKTI GATC 3 cut(s) 334, 406, 1420
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 3 cut(s) 331, 403, 1417
BstMWI GCNNNNNNNGC 8 cut(s) 65, 91, 137, 243, 317, 788, 926, 1058
BstNI CCWGG 3 cut(s) 96, 686, 743
BstNSI RCATGY 2 cut(s) 260, 1090
BstPI GGTNACC 1 cut(s) 1070
BstSCI CCNGG 3 cut(s) 94, 684, 741
BstSNI TACGTA 1 cut(s) 624
BstUI CGCG 2 cut(s) 85, 1241
BstV1I GCAGC 8 cut(s) 55, 162, 374, 565, 733, 841, 1087, 1390
BstX2I RGATCY 2 cut(s) 331, 1417
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 2 cut(s) 331, 1417
Bsu15I ATCGAT 1 cut(s) 406
BsuRI GGCC 3 cut(s) 384, 965, 1141
BsuTUI ATCGAT 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 1239
BtsCI GGATG 7 cut(s) 285, 493, 603, 642, 1249, 1255, 1259
Cac8I GCNNGC 4 cut(s) 28, 258, 789, 868
CfoI GCGC 2 cut(s) 85, 834
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 964, 1139
Cfr42I CCGCGG 1 cut(s) 1242
ClaI ATCGAT 1 cut(s) 406
CseI GACGC 3 cut(s) 639, 1337, 1418
Csp6I GTAC 4 cut(s) 115, 175, 205, 241
CviAII CATG 5 cut(s) 257, 532, 955, 1087, 1168
CviQI GTAC 4 cut(s) 115, 175, 205, 241
DdeI CTNAG 8 cut(s) 262, 366, 765, 783, 1076, 1323, 1422, 1500
DpnI GATC 3 cut(s) 333, 405, 1419
DpnII GATC 3 cut(s) 331, 403, 1417
DraI TTTAAA 2 cut(s) 399, 657
Eam1104I CTCTTC 2 cut(s) 514, 1296
EarI CTCTTC 2 cut(s) 514, 1296
EciI GGCGGA 1 cut(s) 13
Ecl136II GAGCTC 2 cut(s) 211, 232
Eco105I TACGTA 1 cut(s) 624
Eco24I GRGCYC 3 cut(s) 213, 234, 424
Eco32I GATATC 1 cut(s) 21
Eco53kI GAGCTC 2 cut(s) 211, 232
Eco57I CTGAAG 3 cut(s) 845, 944, 1364
Eco88I CYCGRG 3 cut(s) 212, 1155, 1466
Eco91I GGTNACC 1 cut(s) 1070
EcoICRI GAGCTC 2 cut(s) 211, 232
EcoNI CCTNNNNNAGG 2 cut(s) 1079, 1126
EcoO109I RGGNCCY 2 cut(s) 964, 1139
EcoO65I GGTNACC 1 cut(s) 1070
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 3 cut(s) 94, 684, 741
EcoRV GATATC 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 543
EcoT38I GRGCYC 3 cut(s) 213, 234, 424
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 5 cut(s) 260, 535, 958, 1090, 1171
FatI CATG 5 cut(s) 256, 531, 954, 1086, 1167
FauNDI CATATG 1 cut(s) 543
FokI GGATG 7 cut(s) 292, 500, 590, 649, 1242, 1246, 1256
FriOI GRGCYC 3 cut(s) 213, 234, 424
FspBI CTAG 3 cut(s) 9, 788, 881
GlaI GCGC 2 cut(s) 84, 833
GsaI CCCAGC 2 cut(s) 929, 1410
GsuI CTGGAG 1 cut(s) 1015
HaeIII GGCC 3 cut(s) 384, 965, 1141
HapII CCGG 3 cut(s) 27, 118, 144
HgaI GACGC 3 cut(s) 639, 1337, 1418
HhaI GCGC 2 cut(s) 85, 834
Hin1II CATG 5 cut(s) 260, 535, 958, 1090, 1171
Hin6I GCGC 2 cut(s) 83, 832
HinP1I GCGC 2 cut(s) 83, 832
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HindIII AAGCTT 2 cut(s) 47, 918
HinfI GANTC 5 cut(s) 77, 88, 681, 905, 1339
HpaII CCGG 3 cut(s) 27, 118, 144
HphI GGTGA 2 cut(s) 52, 896
Hpy166II GTNNAC 1 cut(s) 729
Hpy188I TCNGA 3 cut(s) 805, 1234, 1344
Hpy188III TCNNGA 9 cut(s) 214, 611, 634, 850, 913, 1082, 1157, 1180, 1421
Hpy8I GTNNAC 1 cut(s) 729
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 662, 1435
HpyCH4III ACNGT 2 cut(s) 434, 1190
HpyCH4IV ACGT 5 cut(s) 164, 325, 338, 623, 1066
HpyF10VI GCNNNNNNNGC 8 cut(s) 65, 91, 137, 243, 317, 788, 926, 1058
HpyF3I CTNAG 8 cut(s) 262, 366, 765, 783, 1076, 1323, 1422, 1500
HpySE526I ACGT 5 cut(s) 164, 325, 338, 623, 1066
Hsp92II CATG 5 cut(s) 260, 535, 958, 1090, 1171
HspAI GCGC 2 cut(s) 83, 832
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
KspI CCGCGG 1 cut(s) 1242
Kzo9I GATC 3 cut(s) 331, 403, 1417
LmnI GCTCC 8 cut(s) 137, 229, 237, 419, 577, 671, 1034, 1220
Lsp1109I GCAGC 8 cut(s) 55, 162, 374, 565, 733, 841, 1087, 1390
LweI GCATC 6 cut(s) 231, 627, 684, 1108, 1264, 1416
MaeI CTAG 3 cut(s) 9, 788, 881
MaeII ACGT 5 cut(s) 164, 325, 338, 623, 1066
MaeIII GTNAC 2 cut(s) 737, 1070
MalI GATC 3 cut(s) 333, 405, 1419
MbiI CCGCTC 2 cut(s) 15, 1223
MboI GATC 3 cut(s) 331, 403, 1417
MboII GAAGA 8 cut(s) 211, 467, 501, 1106, 1310, 1313, 1457, 1460
MflI RGATCY 2 cut(s) 331, 1417
MhlI GDGCHC 3 cut(s) 213, 234, 424
MluCI AATT 4 cut(s) 4, 298, 1354, 1412
MlyI GAGTC 3 cut(s) 86, 97, 690
MmeI TCCRAC 2 cut(s) 474, 783
Mph1103I ATGCAT 1 cut(s) 543
MroNI GCCGGC 1 cut(s) 26
MroXI GAANNNNTTC 1 cut(s) 920
MseI TTAA 8 cut(s) 167, 398, 522, 656, 795, 1149, 1287, 1389
MslI CAYNNNNRTG 2 cut(s) 536, 635
MspA1I CMGCKG 2 cut(s) 365, 1241
MspCI CTTAAG 1 cut(s) 1388
MspI CCGG 3 cut(s) 27, 118, 144
MspR9I CCNGG 3 cut(s) 96, 686, 743
MvaI CCWGG 3 cut(s) 96, 686, 743
MvnI CGCG 2 cut(s) 85, 1241
MwoI GCNNNNNNNGC 8 cut(s) 65, 91, 137, 243, 317, 788, 926, 1058
NaeI GCCGGC 1 cut(s) 28
NdeI CATATG 1 cut(s) 543
NdeII GATC 3 cut(s) 331, 403, 1417
NgoMIV GCCGGC 1 cut(s) 26
NheI GCTAGC 1 cut(s) 787
NlaIII CATG 5 cut(s) 260, 535, 958, 1090, 1171
NlaIV GGNNCC 4 cut(s) 139, 421, 573, 1419
NsiI ATGCAT 1 cut(s) 543
NspI RCATGY 2 cut(s) 260, 1090
PaeI GCATGC 1 cut(s) 260
PaeR7I CTCGAG 1 cut(s) 212
PciI ACATGT 1 cut(s) 1086
PdiI GCCGGC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 2 cut(s) 905, 1339
PflFI GACNNNGTC 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 684
PleI GAGTC 3 cut(s) 85, 96, 689
PpsI GAGTC 3 cut(s) 85, 96, 689
Ppu21I YACGTR 2 cut(s) 624, 1067
PscI ACATGT 1 cut(s) 1086
Psp124BI GAGCTC 2 cut(s) 213, 234
Psp6I CCWGG 3 cut(s) 94, 684, 741
PspEI GGTNACC 1 cut(s) 1070
PspFI CCCAGC 2 cut(s) 925, 1406
PspGI CCWGG 3 cut(s) 94, 684, 741
PspN4I GGNNCC 4 cut(s) 139, 421, 573, 1419
PspPI GGNCC 2 cut(s) 964, 1139
PsrI GAACNNNNNNTAC 2 cut(s) 233, 265
PsuI RGATCY 2 cut(s) 331, 1417
PsyI GACNNNGTC 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 4 cut(s) 116, 176, 206, 242
RsaNI GTAC 4 cut(s) 115, 175, 205, 241
RseI CAYNNNNRTG 2 cut(s) 536, 635
SacI GAGCTC 2 cut(s) 213, 234
SacII CCGCGG 1 cut(s) 1242
SaqAI TTAA 8 cut(s) 167, 398, 522, 656, 795, 1149, 1287, 1389
Sau3AI GATC 3 cut(s) 331, 403, 1417
Sau96I GGNCC 2 cut(s) 964, 1139
SchI GAGTC 3 cut(s) 86, 97, 690
ScrFI CCNGG 3 cut(s) 96, 686, 743
SduI GDGCHC 3 cut(s) 213, 234, 424
SfaNI GCATC 6 cut(s) 231, 627, 684, 1108, 1264, 1416
Sfr274I CTCGAG 1 cut(s) 212
Sfr303I CCGCGG 1 cut(s) 1242
SgrBI CCGCGG 1 cut(s) 1242
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 2 cut(s) 536, 635
SmlI CTYRAG 4 cut(s) 212, 911, 1388, 1472
SmoI CTYRAG 4 cut(s) 212, 911, 1388, 1472
SnaBI TACGTA 1 cut(s) 624
SphI GCATGC 1 cut(s) 260
Sse9I AATT 4 cut(s) 4, 298, 1354, 1412
SspMI CTAG 3 cut(s) 9, 788, 881
SstI GAGCTC 2 cut(s) 213, 234
StyD4I CCNGG 3 cut(s) 94, 684, 741
TaaI ACNGT 2 cut(s) 434, 1190
TaiI ACGT 5 cut(s) 167, 328, 341, 626, 1069
TaqI TCGA 4 cut(s) 17, 213, 305, 406
TasI AATT 4 cut(s) 4, 298, 1354, 1412
TatI WGTACW 1 cut(s) 174
TauI GCSGC 3 cut(s) 15, 384, 1226
TfiI GAWTC 2 cut(s) 905, 1339
Tru1I TTAA 8 cut(s) 167, 398, 522, 656, 795, 1149, 1287, 1389
Tru9I TTAA 8 cut(s) 167, 398, 522, 656, 795, 1149, 1287, 1389
TseI GCWGC 8 cut(s) 68, 150, 362, 553, 746, 829, 1100, 1403
TspDTI ATGAA 6 cut(s) 17, 311, 605, 830, 1107, 1156
TspGWI ACGGA 3 cut(s) 89, 381, 432
Tth111I GACNNNGTC 1 cut(s) 76
Vha464I CTTAAG 1 cut(s) 1388
XagI CCTNNNNNAGG 2 cut(s) 1079, 1126
XapI RAATTY 1 cut(s) 4
XceI RCATGY 2 cut(s) 260, 1090
XhoI CTCGAG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 920
XspI CTAG 3 cut(s) 9, 788, 881
Zsp2I ATGCAT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.