Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001955.1

Orthogroup ID

OG0006200

Physical Location & Seq

Genomic Coordinates Forward (+)

3594 .. 4841

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001955.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atggaatggatggagtttaggaaaattcattatgctttgcctgactatgccgtacggttggatcttacggcgaaagccaaagggatagaggcagctgagagctacttcagcaatttagcaccgtctgcgaagaacaaattgacttacggatcccttttgaactgttattgcaaggaagtgatggaagagaaggcattggcgctttatcagaagatggatgagttggaccatgctaactctactctggtttttaacaatctcatgtctttgtatatgagaaaggagcggccggagaaagtggcgcctttcgtagagcaaatgaagcagagggagatatgtttagatacgtttagttacaatatctggatgcagagctatgcctctttgaatgatattgaaggcgtggagagagttgtggaagagatgcaaagccaagatcaagacaaatgcaactggtcaacatatagtaatctggcttccatctatgtaaaggcgcagctttttgagaaggctgagctagcgcttaaaatgtcggagaaaatgatgataccgctgaagcagcgccagacataccatttcttgattaccctctacgccaacactggtaatctaggtgaggtcaaaagaatatgggaatccctcaagttagctttcccagaaaccaccaatatgagctatatacttatgcttcaagctctatgtaagctaaaagatattgagggtttaaaagaatgctttgaggagtggcagtccaattgttccagttatgatatgaggttagcaaatgtagttatacgtgcttatcttagtcaggacatgtatgaagaagcgctgttgatctttaaggatgctactaagaggtctaaagggcctttcttcaaggctcgagaaatgttcatggtttacttcttggatgcccgtcaggttgattcggccattagctatttgggagaggcaatttcagaaaccaaggatgagaattggcatccgtctccagaaatcattggtgcattttttaagtattttgaggaaacaaaagatgttgatagctctgaaaactttcataagattctgaagcgtctaaattgtctcagttccaatgagtattctttgttgcttaaggtttatctagctgctggtgaattgcttcctgagatatgtcagagattgaaggaagacaacattcaaataagccccgagcttgaggaattggtggagagggtttccccaagtagatcgacagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

415

Amino Acids

48.3

Weight (kDa)

5.21

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02370 AT1G11470 AT4G01990
fragaria_vesca	FvH4_1g27080 FvH4_1g27080 FvH4_1g27080 FvH4_1g27080
malus_domestica	MD09G1284000.v1.1
prunus_persica	Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1
pyrus_communis	pycom09g19190 pycom17g27490
rosa_chinensis	RchiOBHm_Chr3g0487401
rosa_laevigata	RLG00000023007
rosa_multiflora	Rmu_co8482639.1_g000001 Rmu_sc0001955.1_g000002
rosa_roxburghii	Rroxscaffold_6G00394810
rosa_rugosa	Rorug03G0233700
rosa_samantha	Rh3AG281800 Rh3BG317400 Rh3CG315500 Rh3DG313400
rosa_wichuraiana	Rw3G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	301
AccBSI	CCGCTC	1 cut(s)	286
AciI	CCGC	2 cut(s)	286, 551
AclWI	GGATC	3 cut(s)	69, 144, 157
AcoI	YGGCCR	2 cut(s)	287, 933
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	3 cut(s)	91, 575, 1094
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	54
AfeI	AGCGCT	2 cut(s)	522, 831
AflII	CTTAAG	1 cut(s)	1118
AflIII	ACRYGT	1 cut(s)	816
AgsI	TTSAA	7 cut(s)	160, 388, 398, 692, 880, 1171, 1187
Alw26I	GTCTC	2 cut(s)	996, 1094
AlwI	GGATC	3 cut(s)	69, 144, 157
Ama87I	CYCGRG	2 cut(s)	885, 1196
Aor51HI	AGCGCT	2 cut(s)	522, 831
AoxI	GGCC	3 cut(s)	287, 869, 933
ApeKI	GCWGC	4 cut(s)	92, 496, 559, 1133
ApoI	RAATTY	1 cut(s)	24
Asp700I	GAANNNNTTC	2 cut(s)	1059, 1146
AspLEI	GCGC	6 cut(s)	202, 304, 496, 523, 564, 832
AspS9I	GGNCC	2 cut(s)	226, 869
AsuHPI	GGTGA	2 cut(s)	626, 1151
AsuNHI	GCTAGC	1 cut(s)	517
AvaI	CYCGRG	2 cut(s)	885, 1196
AvaII	GGWCC	1 cut(s)	226
BamHI	GGATCC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	301
BarI	GAAGNNNNNNTAC	2 cut(s)	460, 492
BbsI	GAAGAC	1 cut(s)	1182
BbvI	GCAGC	4 cut(s)	104, 508, 571, 1120
BccI	CCATC	4 cut(s)	4, 175, 208, 488
BceAI	ACGGC	2 cut(s)	35, 84
BcoDI	GTCTC	2 cut(s)	996, 1094
BfaI	CTAG	3 cut(s)	518, 611, 1130
BfoI	RGCGCY	5 cut(s)	203, 305, 524, 565, 833
BfrI	CTTAAG	1 cut(s)	1118
BisI	GCNGC	5 cut(s)	93, 287, 497, 560, 1134
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	5 cut(s)	94, 288, 498, 561, 1135
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	2 cut(s)	885, 1196
BmgT120I	GGNCC	2 cut(s)	226, 869
BmiI	GGNNCC	2 cut(s)	151, 303
BmsI	GCATC	5 cut(s)	357, 414, 838, 904, 994
BmtI	GCTAGC	1 cut(s)	521
BpiI	GAAGAC	1 cut(s)	1182
BpmI	CTGGAG	1 cut(s)	978
Bpu1102I	GCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	2 cut(s)	626, 1223
BsaAI	YACGTR	1 cut(s)	797
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	969
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bse1I	ACTGG	3 cut(s)	458, 607, 762
BseDI	CCNNGG	1 cut(s)	969
BseGI	GGATG	7 cut(s)	15, 223, 372, 853, 919, 979, 985
BseMII	CTCAG	4 cut(s)	87, 504, 1105, 1143
BseNI	ACTGG	3 cut(s)	458, 607, 762
BseRI	GAGGAG	1 cut(s)	755
BseX3I	CGGCCG	1 cut(s)	287
BseXI	GCAGC	4 cut(s)	104, 508, 571, 1120
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	3 cut(s)	289, 871, 935
BshNI	GGYRCC	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	290
BsiHKCI	CYCGRG	2 cut(s)	885, 1196
BsiSI	CCGG	1 cut(s)	290
BsiWI	CGTACG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	996, 1094
BsmBI	CGTCTC	1 cut(s)	996
BsmI	GAATGC	1 cut(s)	737
BsnI	GGCC	3 cut(s)	289, 871, 935
BsoBI	CYCGRG	2 cut(s)	885, 1196
Bsp143I	GATC	5 cut(s)	61, 149, 436, 837, 1235
Bsp1720I	GCTNAGC	1 cut(s)	513
BspACI	CCGC	2 cut(s)	286, 551
BspANI	GGCC	3 cut(s)	289, 871, 935
BspCNI	CTCAG	4 cut(s)	88, 505, 1104, 1144
BspLI	GGNNCC	2 cut(s)	151, 303
BspOI	GCTAGC	1 cut(s)	521
BspPI	GGATC	3 cut(s)	69, 144, 157
BspT107I	GGYRCC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	1118
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	3 cut(s)	458, 607, 762
BssECI	CCNNGG	1 cut(s)	969
BssMI	GATC	5 cut(s)	61, 149, 436, 837, 1235
BssNI	GRCGYC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	969
Bst4CI	ACNGT	3 cut(s)	57, 123, 164
Bst6I	CTCTTC	2 cut(s)	180, 414
BstACI	GRCGYC	1 cut(s)	302
BstAFI	CTTAAG	1 cut(s)	1118
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	797
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	6 cut(s)	96, 513, 806, 855, 1091, 1152
BstF5I	GGATG	7 cut(s)	15, 223, 372, 853, 919, 979, 985
BstH2I	RGCGCY	5 cut(s)	203, 305, 524, 565, 833
BstHHI	GCGC	6 cut(s)	202, 304, 496, 523, 564, 832
BstKTI	GATC	5 cut(s)	64, 152, 439, 840, 1238
BstMAI	GTCTC	2 cut(s)	996, 1094
BstMBI	GATC	5 cut(s)	61, 149, 436, 837, 1235
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 125, 322, 518, 559
BstNSI	RCATGY	1 cut(s)	820
BstV1I	GCAGC	4 cut(s)	104, 508, 571, 1120
BstV2I	GAAGAC	1 cut(s)	1182
BstX2I	RGATCY	2 cut(s)	61, 149
BstYI	RGATCY	2 cut(s)	61, 149
BstZI	CGGCCG	1 cut(s)	287
BsuRI	GGCC	3 cut(s)	289, 871, 935
BtsCI	GGATG	7 cut(s)	15, 223, 372, 853, 919, 979, 985
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	1 cut(s)	519
CfoI	GCGC	6 cut(s)	202, 304, 496, 523, 564, 832
Cfr13I	GGNCC	2 cut(s)	226, 869
CseI	GACGC	1 cut(s)	1067
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	4 cut(s)	230, 262, 817, 898
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	6 cut(s)	96, 513, 806, 855, 1091, 1152
DinI	GGCGCC	1 cut(s)	303
DpnI	GATC	5 cut(s)	63, 151, 438, 839, 1237
DpnII	GATC	5 cut(s)	61, 149, 436, 837, 1235
DraI	TTTAAA	1 cut(s)	726
EaeI	YGGCCR	2 cut(s)	287, 933
EagI	CGGCCG	1 cut(s)	287
Eam1104I	CTCTTC	2 cut(s)	180, 414
EarI	CTCTTC	2 cut(s)	180, 414
EclXI	CGGCCG	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	969
Eco47I	GGWCC	1 cut(s)	226
Eco47III	AGCGCT	2 cut(s)	522, 831
Eco52I	CGGCCG	1 cut(s)	287
Eco57I	CTGAAG	3 cut(s)	91, 575, 1094
Eco88I	CYCGRG	2 cut(s)	885, 1196
EcoO109I	RGGNCCY	1 cut(s)	869
EcoT14I	CCWWGG	1 cut(s)	969
EgeI	GGCGCC	1 cut(s)	303
EheI	GGCGCC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	969
Esp3I	CGTCTC	1 cut(s)	996
FaeI	CATG	4 cut(s)	233, 265, 820, 901
FatI	CATG	4 cut(s)	229, 261, 816, 897
Fnu4HI	GCNGC	5 cut(s)	93, 287, 497, 560, 1134
FokI	GGATG	7 cut(s)	22, 230, 379, 860, 926, 972, 986
Fsp4HI	GCNGC	5 cut(s)	93, 287, 497, 560, 1134
FspBI	CTAG	3 cut(s)	518, 611, 1130
GlaI	GCGC	6 cut(s)	201, 303, 495, 522, 563, 831
GluI	GCNGC	5 cut(s)	93, 287, 497, 560, 1134
GsuI	CTGGAG	1 cut(s)	978
HaeII	RGCGCY	5 cut(s)	203, 305, 524, 565, 833
HaeIII	GGCC	3 cut(s)	289, 871, 935
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	1 cut(s)	1067
HhaI	GCGC	6 cut(s)	202, 304, 496, 523, 564, 832
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	4 cut(s)	233, 265, 820, 901
Hin6I	GCGC	6 cut(s)	200, 302, 494, 521, 562, 830
HinP1I	GCGC	6 cut(s)	200, 302, 494, 521, 562, 830
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	3 cut(s)	635, 929, 1069
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	626, 1151
Hpy166II	GTNNAC	2 cut(s)	459, 904
Hpy188I	TCNGA	6 cut(s)	210, 535, 964, 1054, 1074, 1164
Hpy188III	TCNNGA	7 cut(s)	364, 440, 580, 812, 887, 995, 1151
Hpy8I	GTNNAC	2 cut(s)	459, 904
HpyAV	CCTTC	4 cut(s)	184, 392, 502, 1165
HpyCH4III	ACNGT	3 cut(s)	57, 123, 164
HpyCH4IV	ACGT	2 cut(s)	347, 796
HpyCH4V	TGCA	5 cut(s)	171, 370, 427, 450, 1010
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 125, 322, 518, 559
HpyF3I	CTNAG	6 cut(s)	96, 513, 806, 855, 1091, 1152
HpySE526I	ACGT	2 cut(s)	347, 796
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	4 cut(s)	233, 265, 820, 901
HspAI	GCGC	6 cut(s)	200, 302, 494, 521, 562, 830
KasI	GGCGCC	1 cut(s)	301
Kzo9I	GATC	5 cut(s)	61, 149, 436, 837, 1235
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	4 cut(s)	104, 508, 571, 1120
LweI	GCATC	5 cut(s)	357, 414, 838, 904, 994
MaeI	CTAG	3 cut(s)	518, 611, 1130
MaeII	ACGT	2 cut(s)	347, 796
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	5 cut(s)	63, 151, 438, 839, 1237
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	5 cut(s)	61, 149, 436, 837, 1235
MboII	GAAGA	7 cut(s)	142, 197, 223, 431, 836, 868, 1187
MfeI	CAATTG	1 cut(s)	754
MflI	RGATCY	2 cut(s)	61, 149
MluCI	AATT	9 cut(s)	24, 112, 137, 754, 957, 979, 1084, 1142, 1208
Mly113I	GGCGCC	1 cut(s)	302
MmeI	TCCRAC	3 cut(s)	39, 204, 513
MroXI	GAANNNNTTC	2 cut(s)	1059, 1146
MseI	TTAA	6 cut(s)	252, 525, 725, 843, 1017, 1119
MslI	CAYNNNNRTG	1 cut(s)	668
MspA1I	CMGCKG	2 cut(s)	95, 553
MspCI	CTTAAG	1 cut(s)	1118
MspI	CCGG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	754
Mva1269I	GAATGC	1 cut(s)	737
MwoI	GCNNNNNNNGC	5 cut(s)	108, 125, 322, 518, 559
NarI	GGCGCC	1 cut(s)	302
NdeII	GATC	5 cut(s)	61, 149, 436, 837, 1235
NheI	GCTAGC	1 cut(s)	517
NlaIII	CATG	4 cut(s)	233, 265, 820, 901
NlaIV	GGNNCC	2 cut(s)	151, 303
NspI	RCATGY	1 cut(s)	820
PaeR7I	CTCGAG	1 cut(s)	885
PciI	ACATGT	1 cut(s)	816
PctI	GAATGC	1 cut(s)	737
PdmI	GAANNNNTTC	2 cut(s)	1059, 1146
PfeI	GAWTC	3 cut(s)	635, 929, 1069
Pfl23II	CGTACG	1 cut(s)	52
PkrI	GCNGC	5 cut(s)	94, 288, 498, 561, 1135
PluTI	GGCGCC	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	797
PscI	ACATGT	1 cut(s)	816
PspLI	CGTACG	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	151, 303
PspPI	GGNCC	2 cut(s)	226, 869
PsuI	RGATCY	2 cut(s)	61, 149
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	668
SaqAI	TTAA	6 cut(s)	252, 525, 725, 843, 1017, 1119
SatI	GCNGC	5 cut(s)	93, 287, 497, 560, 1134
Sau3AI	GATC	5 cut(s)	61, 149, 436, 837, 1235
Sau96I	GGNCC	2 cut(s)	226, 869
SfaNI	GCATC	5 cut(s)	357, 414, 838, 904, 994
SfoI	GGCGCC	1 cut(s)	303
Sfr274I	CTCGAG	1 cut(s)	885
SinI	GGWCC	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	885
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	4 cut(s)	641, 885, 1118, 1202
SmoI	CTYRAG	4 cut(s)	641, 885, 1118, 1202
Sse9I	AATT	9 cut(s)	24, 112, 137, 754, 957, 979, 1084, 1142, 1208
SsiI	CCGC	2 cut(s)	286, 551
SspDI	GGCGCC	1 cut(s)	301
SspMI	CTAG	3 cut(s)	518, 611, 1130
StyI	CCWWGG	1 cut(s)	969
TaaI	ACNGT	3 cut(s)	57, 123, 164
TaiI	ACGT	2 cut(s)	350, 799
TaqI	TCGA	2 cut(s)	886, 1238
TasI	AATT	9 cut(s)	24, 112, 137, 754, 957, 979, 1084, 1142, 1208
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	3 cut(s)	635, 929, 1069
Tru1I	TTAA	6 cut(s)	252, 525, 725, 843, 1017, 1119
Tru9I	TTAA	6 cut(s)	252, 525, 725, 843, 1017, 1119
TscAI	CASTG	1 cut(s)	607
TseI	GCWGC	4 cut(s)	92, 496, 559, 1133
TspDTI	ATGAA	5 cut(s)	17, 335, 837, 886, 1052
TspGWI	ACGGA	2 cut(s)	162, 978
TspRI	CASTG	1 cut(s)	607
Vha464I	CTTAAG	1 cut(s)	1118
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	1 cut(s)	820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XhoI	CTCGAG	1 cut(s)	885
XmnI	GAANNNNTTC	2 cut(s)	1059, 1146
XspI	CTAG	3 cut(s)	518, 611, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.