Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006200

Physical Location & Seq

Genomic Coordinates Forward (+)

21597597 .. 21599178

Gene Structure 1582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0233700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGCCACCTCAAGCTTATGCACAGAATAGATGCCAAGAGGAGTTGTATGCTAGTGGGTGTACATTGATGGATTGCGGGGAAAAGTGTTTCAATAAACACCATGATCAAGGACATGAATGCATTGGCAATAGTGGCGGAACTATCTATGCTTGTTATTGCTTCTTCAATTGTACGCGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

60

Amino Acids

6.75

Weight (kDa)

5.78

Isoelectric Point (pI)

69.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SLR1-BP	PF07333	8 - 57	2.2e-06	S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02370 AT1G11470 AT4G01990
fragaria_vesca	FvH4_1g27080 FvH4_1g27080 FvH4_1g27080 FvH4_1g27080
malus_domestica	MD09G1284000.v1.1
prunus_persica	Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1 Prupe.3G010700_v2.0.a1
pyrus_communis	pycom09g19190 pycom17g27490
rosa_chinensis	RchiOBHm_Chr3g0487401
rosa_laevigata	RLG00000023007
rosa_multiflora	Rmu_co8482639.1_g000001 Rmu_sc0001955.1_g000002
rosa_roxburghii	Rroxscaffold_6G00394810
rosa_rugosa	Rorug03G0233700
rosa_samantha	Rh3AG281800 Rh3BG317400 Rh3CG315500 Rh3DG313400
rosa_wichuraiana	Rw3G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	175
AciI	CCGC	2 cut(s)	75, 135
AfaI	GTAC	3 cut(s)	61, 172, 178
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	91, 166
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
BccI	CCATC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	103
BfaI	CTAG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	2 cut(s)	75, 135
BspFNI	CGCG	1 cut(s)	175
BsrGI	TGTACA	1 cut(s)	59
BssMI	GATC	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstUI	CGCG	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	60, 171, 177
CviAII	CATG	2 cut(s)	101, 113
CviJI	RGCY	1 cut(s)	14
CviKI_1	RGCY	1 cut(s)	14
CviQI	GTAC	3 cut(s)	60, 171, 177
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	122
FaeI	CATG	2 cut(s)	104, 116
FaiI	YATR	5 cut(s)	18, 48, 102, 114, 147
FatI	CATG	2 cut(s)	100, 112
FauI	CCCGC	1 cut(s)	68
FbaI	TGATCA	1 cut(s)	103
FspBI	CTAG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	104, 116
HindIII	AAGCTT	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	20, 120
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	104, 116
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	51
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	1 cut(s)	154
MfeI	CAATTG	1 cut(s)	166
MluCI	AATT	1 cut(s)	166
MluI	ACGCGT	1 cut(s)	173
MnlI	CCTC	2 cut(s)	18, 31
Mph1103I	ATGCAT	1 cut(s)	122
MseI	TTAA	1 cut(s)	181
MunI	CAATTG	1 cut(s)	166
Mva1269I	GAATGC	1 cut(s)	122
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	104, 116
NsiI	ATGCAT	1 cut(s)	122
PctI	GAATGC	1 cut(s)	122
RsaI	GTAC	3 cut(s)	61, 172, 178
RsaNI	GTAC	3 cut(s)	60, 171, 177
SaqAI	TTAA	1 cut(s)	181
Sau3AI	GATC	1 cut(s)	103
SetI	ASST	2 cut(s)	10, 16
SfaNI	GCATC	1 cut(s)	20
SgeI	CNNG	8 cut(s)	23, 47, 63, 88, 113, 119, 125, 162
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	2 cut(s)	75, 135
SspMI	CTAG	1 cut(s)	51
TasI	AATT	1 cut(s)	166
TatI	WGTACW	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	181
Tru9I	TTAA	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	129
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.