Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012017

Physical Location & Seq

Genomic Coordinates Forward (+)

493639 .. 495158

Gene Structure 1520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGATGATGATCCTCAAGCCTTTATCTTCTCACCACGTTTCCAATTTCCGTCTCTCTGTATCGTTTCTTCACAGCGTGGCACTATCGGATGCGAAGGTTCCTGTAGAAGAAGAAGGCGATGACGCAGAAACTGTTTTCCGGATGATAAATGGATCAAATCTGCAAGTGGAATTGAAGGAATCGTTGAGCTCTAGTGGAATCCACTTGTCCAAGGACTTAATCGATAGGGTTTTGAAAAGGGTAAGGTTTAGTCATGGGAACCCAATTCAAACCCTAGAGTTTTACAGGTACGCTAGTGCTATAAGAGGGTTTTATCATTCTTCGTTTTCTCTAGATACAATGCTTTATATTCTCGGTAGAAATCGAAAGTTCGATCAAATTTGGGAGCTTTTGATTGAGACTAAGCGTAAGGATCGATCTTTGATATCTCCAAGGACGATGCAAGTTGTGTTAGGTAGAGTTGCTAAGTTGTGTTCCGTTAGACAAACTGTTGAATCTTTCTGGAAGTTTAAGAGATTGGTTCCTGATTTCTTTGACACGGCTTGTTTCAATGCTCTCTTGAGAACTCTTTGCCAAGAGAAGAGTATGACTGATGCTAGGAATGTGTATCATAGCTTGAAGCATCAGTTTCAGCCTGATTTGCAGACTTTTAATATACTTTTATCGGGTTGGAAATCATCGGAAGAAGCGGAAGCTTTCTTCGAGGAAATGAAGGGAAAGGGGCTAAAACCTGATGTGGTTACGTATAACTCTTTGATTGATGTGTATTGCAAGGATAGAGAGATTGAGAAAGCTTATAAGTTGATAGATAAGATGCGAGAGGAGGAGGAAACTCCCGATGTTATAACTTATACAACTGTTATAGGTGGGTTGGGGTTAATCGGTCAGCCTGATAAAGCTAGAGAAGTTTTAAAGGAAATGAAGGAGTATGGGTGTTATCCTGATGTTGCGGCTTATAATGCTGCTATTAGGAATTTTTGCATAGCGAGGAGGCTCGGGGATGCGGATAAGTTGGTGGATGAGATGGTGAAGAAGGGTTTGTCTCCGAATGCGACTACTTATAATCTGTTTTTCCGTGTTTTATCGTTGGCAAATGATTTGGGACGGTCTTGGGAGCTGTATGTGAGAATGTTGGGGAATGAGTGTTTGCCGAATACACAATCCTGTATGTTCTTGATTAAGATGTTTAAGAGACACGAGAAAGTGGATATGGCGATGCGGTTGTGGGAAGATATGGTGGTAAAAGGTTTTGGTTCATATAGTTTGGTTTCAGATGTGCTTTTGGATTTGCTTTGTGATTTGGCTAAAGTCGAAGAAGCTGAGAAATGTTTGCTTGAGATGGTTGAGAAAGGTCATAGACCGAGTAATGTCTCGTTTAAAAGGATCAAGTTGTTGATGGAGCTAGCAAATAAGCACGATGAGGTTAATAACTTGATACAAAAGATGGCTATTTTCAGTACAGAGATTCCGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

491

Amino Acids

56.56

Weight (kDa)

7.93

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	179 - 223	1e-06	PPR repeat family
PPR_2	PF13041	228 - 258	1.9e-09	PPR repeat family
PPR_3	PF13812	234 - 289	2.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	240 - 273	1.2e-13	PPR repeat
PPR_2	PF13041	244 - 291	8.3e-17	PPR repeat family
PPR	PF01535	247 - 275	1.6e-08	PPR repeat
PPR_3	PF13812	267 - 324	2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	279 - 327	7.4e-12	PPR repeat family
PPR_1	PF12854	279 - 308	1e-06	PPR repeat
PPR	PF01535	282 - 312	4.3e-07	PPR repeat
PPR_2	PF13041	314 - 361	7.5e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02420
fragaria_vesca	FvH4_5g32610 FvH4_5g32610 FvH4_5g32610
malus_domestica	MD08G1216300.v1.1
prunus_persica	Prupe.1G549200_v2.0.a1
pyrus_communis	pycom08g18730
rosa_chinensis	RchiOBHm_Chr7g0230241
rosa_laevigata	RLG00000001507
rosa_multiflora	Rmu_sc0002822.1_g000019 Rmu_sc0008506.1_g000024
rosa_roxburghii	Rroxscaffold_3G00230280
rosa_rugosa	Rorug07G0260000
rosa_samantha	Rh7AG409400 Rh7BG389300 Rh7CG428000 Rh7DG407000
rosa_wichuraiana	Rw0G018590 Rw0G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	798, 845, 957, 1062
AccII	CGCG	1 cut(s)	1471
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	5 cut(s)	689, 950, 1004, 1219, 1469
AclWI	GGATC	4 cut(s)	4, 160, 420, 1391
AcsI	RAATTY	2 cut(s)	378, 973
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	2 cut(s)	290, 1459
AgsI	TTSAA	6 cut(s)	175, 235, 269, 494, 550, 619
AluBI	AGCT	9 cut(s)	189, 388, 615, 695, 794, 899, 1117, 1319, 1402
AluI	AGCT	9 cut(s)	189, 388, 615, 695, 794, 899, 1117, 1319, 1402
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	5 cut(s)	56, 392, 1047, 1186, 1375
AlwI	GGATC	4 cut(s)	4, 160, 420, 1391
AlwNI	CAGNNNCTG	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	995
Aor13HI	TCCGGA	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	962
ApoI	RAATTY	2 cut(s)	378, 973
AsuHPI	GGTGA	2 cut(s)	23, 1039
AsuNHI	GCTAGC	1 cut(s)	1402
AvaI	CYCGRG	1 cut(s)	995
BaeI	ACNNNNGTAYC	2 cut(s)	280, 313
BanII	GRGCYC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	51, 83
BauI	CACGAG	1 cut(s)	1196
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	949
BccI	CCATC	4 cut(s)	1018, 1333, 1390, 1438
BceAI	ACGGC	1 cut(s)	555
BcoDI	GTCTC	5 cut(s)	56, 392, 1047, 1186, 1375
BfaI	CTAG	7 cut(s)	192, 275, 294, 332, 597, 900, 1403
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	2 cut(s)	951, 963
BlsI	GCNGC	2 cut(s)	952, 964
BmeT110I	CYCGRG	1 cut(s)	995
BmiI	GGNNCC	3 cut(s)	99, 260, 522
BmsI	GCATC	7 cut(s)	79, 429, 583, 631, 804, 991, 1206
BmtI	GCTAGC	1 cut(s)	1406
BpuEI	CTTGAG	2 cut(s)	580, 1355
Bsa29I	ATCGAT	2 cut(s)	222, 415
BsaAI	YACGTR	1 cut(s)	744
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	210, 431
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	917, 947
Bse8I	GATNNNNATC	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	138
BseCI	ATCGAT	2 cut(s)	222, 415
BseDI	CCNNGG	2 cut(s)	210, 431
BseGI	GGATG	4 cut(s)	94, 147, 1006, 1024
BseJI	GATNNNNATC	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	1311
BseRI	GAGGAG	3 cut(s)	836, 839, 1003
BseXI	GCAGC	1 cut(s)	949
Bsh1236I	CGCG	1 cut(s)	1471
BshVI	ATCGAT	2 cut(s)	222, 415
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	995
BsiSI	CCGG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	1116
BsmAI	GTCTC	5 cut(s)	56, 392, 1047, 1186, 1375
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	1116
BsmI	GAATGC	1 cut(s)	1054
BsoBI	CYCGRG	1 cut(s)	995
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	6 cut(s)	9, 152, 373, 412, 416, 1383
BspACI	CCGC	5 cut(s)	689, 950, 1004, 1219, 1469
BspCNI	CTCAG	1 cut(s)	1312
BspDI	ATCGAT	2 cut(s)	222, 415
BspEI	TCCGGA	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	1471
BspLI	GGNNCC	3 cut(s)	99, 260, 522
BspOI	GCTAGC	1 cut(s)	1406
BspPI	GGATC	4 cut(s)	4, 160, 420, 1391
BssECI	CCNNGG	2 cut(s)	210, 431
BssMI	GATC	6 cut(s)	9, 152, 373, 412, 416, 1383
BssSI	CACGAG	1 cut(s)	1196
BssT1I	CCWWGG	2 cut(s)	210, 431
Bst2BI	CACGAG	1 cut(s)	1196
Bst4CI	ACNGT	4 cut(s)	133, 490, 859, 1107
Bst6I	CTCTTC	1 cut(s)	575
BstBAI	YACGTR	1 cut(s)	744
BstC8I	GCNNGC	1 cut(s)	1404
BstDEI	CTNAG	3 cut(s)	402, 465, 1320
BstF5I	GGATG	4 cut(s)	94, 147, 1006, 1024
BstFNI	CGCG	1 cut(s)	1471
BstKTI	GATC	6 cut(s)	12, 155, 376, 415, 419, 1386
BstMAI	GTCTC	5 cut(s)	56, 392, 1047, 1186, 1375
BstMBI	GATC	6 cut(s)	9, 152, 373, 412, 416, 1383
BstMWI	GCNNNNNNNGC	2 cut(s)	640, 959
BstSFI	CTRYAG	1 cut(s)	102
BstSNI	TACGTA	1 cut(s)	744
BstUI	CGCG	1 cut(s)	1471
BstV1I	GCAGC	1 cut(s)	949
Bsu15I	ATCGAT	2 cut(s)	222, 415
BsuTUI	ATCGAT	2 cut(s)	222, 415
BtgZI	GCGATG	2 cut(s)	132, 1229
BtsCI	GGATG	4 cut(s)	94, 147, 1006, 1024
Cac8I	GCNNGC	1 cut(s)	1404
CaiI	CAGNNNCTG	1 cut(s)	131
ClaI	ATCGAT	2 cut(s)	222, 415
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	289, 1458
CviAII	CATG	1 cut(s)	254
CviQI	GTAC	2 cut(s)	289, 1458
DdeI	CTNAG	3 cut(s)	402, 465, 1320
DpnI	GATC	6 cut(s)	11, 154, 375, 414, 418, 1385
DpnII	GATC	6 cut(s)	9, 152, 373, 412, 416, 1383
DraI	TTTAAA	2 cut(s)	912, 1378
DraIII	CACNNNGTG	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
Ecl136II	GAGCTC	1 cut(s)	189
Eco105I	TACGTA	1 cut(s)	744
Eco130I	CCWWGG	2 cut(s)	210, 431
Eco24I	GRGCYC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	995
EcoICRI	GAGCTC	1 cut(s)	189
EcoRV	GATATC	1 cut(s)	426
EcoT14I	CCWWGG	2 cut(s)	210, 431
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	2 cut(s)	210, 431
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	1 cut(s)	257
FaqI	GGGAC	1 cut(s)	1116
FatI	CATG	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	951, 963
FokI	GGATG	4 cut(s)	101, 154, 1013, 1031
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	951, 963
FspBI	CTAG	7 cut(s)	192, 275, 294, 332, 597, 900, 1403
GluI	GCNGC	2 cut(s)	951, 963
HapII	CCGG	1 cut(s)	139
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	257
HindIII	AAGCTT	2 cut(s)	693, 792
HinfI	GANTC	4 cut(s)	179, 198, 494, 1465
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	23, 1039
Hpy188I	TCNGA	4 cut(s)	88, 682, 1047, 1273
Hpy188III	TCNNGA	8 cut(s)	139, 332, 502, 524, 559, 836, 941, 1174
HpyAV	CCTTC	6 cut(s)	88, 107, 169, 706, 916, 1027
HpyCH4III	ACNGT	4 cut(s)	133, 490, 859, 1107
HpyCH4IV	ACGT	2 cut(s)	36, 743
HpyCH4V	TGCA	5 cut(s)	163, 442, 643, 771, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	640, 959
HpyF3I	CTNAG	3 cut(s)	402, 465, 1320
HpySE526I	ACGT	2 cut(s)	36, 743
Hsp92II	CATG	1 cut(s)	257
Kpn2I	TCCGGA	1 cut(s)	138
Kzo9I	GATC	6 cut(s)	9, 152, 373, 412, 416, 1383
LmnI	GCTCC	3 cut(s)	385, 1114, 1399
Lsp1109I	GCAGC	1 cut(s)	949
LweI	GCATC	7 cut(s)	79, 429, 583, 631, 804, 991, 1206
MaeI	CTAG	7 cut(s)	192, 275, 294, 332, 597, 900, 1403
MaeII	ACGT	2 cut(s)	36, 743
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	6 cut(s)	11, 154, 375, 414, 418, 1385
MboI	GATC	6 cut(s)	9, 152, 373, 412, 416, 1383
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	5 cut(s)	43, 170, 264, 378, 973
MmeI	TCCRAC	1 cut(s)	650
MnlI	CCTC	9 cut(s)	23, 299, 697, 814, 817, 820, 981, 984, 1414
MroI	TCCGGA	1 cut(s)	138
MspI	CCGG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	1054
MvnI	CGCG	1 cut(s)	1471
MwoI	GCNNNNNNNGC	2 cut(s)	640, 959
NdeII	GATC	6 cut(s)	9, 152, 373, 412, 416, 1383
NheI	GCTAGC	1 cut(s)	1402
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	3 cut(s)	99, 260, 522
PctI	GAATGC	1 cut(s)	1054
PfeI	GAWTC	4 cut(s)	179, 198, 494, 1465
PkrI	GCNGC	2 cut(s)	952, 964
Ppu21I	YACGTR	1 cut(s)	744
PsiI	TTATAA	4 cut(s)	798, 845, 957, 1062
Psp124BI	GAGCTC	1 cut(s)	191
PspN4I	GGNNCC	3 cut(s)	99, 260, 522
PstNI	CAGNNNCTG	1 cut(s)	131
RsaI	GTAC	2 cut(s)	290, 1459
RsaNI	GTAC	2 cut(s)	289, 1458
SacI	GAGCTC	1 cut(s)	191
SatI	GCNGC	2 cut(s)	951, 963
Sau3AI	GATC	6 cut(s)	9, 152, 373, 412, 416, 1383
SduI	GDGCHC	1 cut(s)	191
SfaNI	GCATC	7 cut(s)	79, 429, 583, 631, 804, 991, 1206
SfcI	CTRYAG	1 cut(s)	102
SmlI	CTYRAG	3 cut(s)	14, 559, 1334
SmoI	CTYRAG	3 cut(s)	14, 559, 1334
SnaBI	TACGTA	1 cut(s)	744
Sse9I	AATT	5 cut(s)	43, 170, 264, 378, 973
SsiI	CCGC	5 cut(s)	689, 950, 1004, 1219, 1469
SspMI	CTAG	7 cut(s)	192, 275, 294, 332, 597, 900, 1403
SstI	GAGCTC	1 cut(s)	191
StyI	CCWWGG	2 cut(s)	210, 431
TaaI	ACNGT	4 cut(s)	133, 490, 859, 1107
TaiI	ACGT	2 cut(s)	39, 746
TaqI	TCGA	6 cut(s)	222, 364, 372, 415, 702, 1311
TaqII	GACCGA	2 cut(s)	872, 1375
TasI	AATT	5 cut(s)	43, 170, 264, 378, 973
TatI	WGTACW	1 cut(s)	1457
TauI	GCSGC	1 cut(s)	953
TfiI	GAWTC	4 cut(s)	179, 198, 494, 1465
TseI	GCWGC	1 cut(s)	962
TspDTI	ATGAA	3 cut(s)	725, 935, 1245
TspGWI	ACGGA	3 cut(s)	38, 466, 1064
XapI	RAATTY	2 cut(s)	378, 973
XbaI	TCTAGA	1 cut(s)	331
XspI	CTAG	7 cut(s)	192, 275, 294, 332, 597, 900, 1403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.