Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012017

Physical Location & Seq

Genomic Coordinates Forward (+)

15112296 .. 15115682

Gene Structure 3387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGTCGACACCATTTGACCTTCTCTACATGTTTGCCTCAAAATCGTCTAGGCCAAAATTAGAGGCCGAGGGACTTGCGGTCCAATTGTCCTTCTTGATACGTAGGCATGCCAACTCGTGGCCAATTGGCCAAGTTAGCCCTCGCCTCAACTGGACAACAAAACGCTCCAAGGCTTTACAGCCCATCTCATTGCAACATAGTGTCTCTCCACAGGTACTCGCCCCAAAACCCAATTTTCTTTCTCCTCGATTACTCTCTTCCCAAACCCCAATCGACAGTGACGTCAACACTGTCTACCGCATAGTCAGTAGCTCCACCCATTCCAAAAACTTGAAGCAAAACTTGAAATCGAGTGGTGTTTTCCTCTCAAATGGTTTGATAGATGAGGTTCTGAAGCGGGCTAGGTTCAGCCATGGAAACCCTTTACAGGCTCTCGAGTTTTTCAATCACACTGGGAATAGGAGAGGGTTTTATCACACCACATTTGCACTCGACACAATGCTTTATATGTTGGGAAGAAGTCGAATGTTCGAAAAGATGTGGGAGGTTTTGGTTGAGATCAAGAGTAAGGATAGGAATTTGATAACTCCTCGTACTGTGATGGTTGTTTTAGCTAGGATTGCTAAGGTTTGTTCTGTTAGGGAGACTGTGGAGTGTTTTAGAAAGTTCAAGAAGCTTGTGCCCGAATTCGACACAGCTTGTTTCAATGCGTTGTTGAGGACTCTTTGTCAAGAGAAGAGTATGACAGATGCTAGGAATGTGTATCATAAGCTGAAGCAGAGCTTTAGGCCGGATTTGCAGACCTTTAATATATTGTTATCAGGTTGGAAGTCGTCGGAGGAAGCCGAGGGGTTTTTCGAGGAGATGAGGGAGATTGGTCTGAAACCTGATATTGTTTCGTATAATTGTTTGATTGATGTTTATAGTAAGAATAGAGAAATGGAGAAAGCGTTTAAGGTGATGGAAAAAATGCGCGACGAGGATATATCACCTGATAAAATCACTTATACTTGTGTCATTGGGGGATTGGGGTTGGTTGGTCAGCCTGATAAAGCCAAAGATGTGTTGAAGGAAATGAAGGAGCTTGGGTGCTACCCAGATGTTGCAGCATACAATGCTGCCATTAGGAATTTTTGCATTGCAAAGAGGCTTGGTGATGCTAATGGGTTGATGGAGGAGATGATAAGTAATGGTTTGAGTCCAAATGCAACTACTTACAATTTGTTCTTTAGGGTTTTCTTCTGGTCAAGTGACTTGCAGAACTCTTGGAGCTTGTATGGGAGAATGATGCATACTGGGTGTCTGCCTAATACACAGTCGTGCATGTTCCTGATCAGGTTGTTTCGGAGGCTGGAAAAGGTGGATATGGCATTGCAGCTGTGGAATGAAATGGTCGAGAGGGGTTTTGGCTCTTATATATTGGTATCTGATGTGCTGTTTGATTTGCTGTGTGATATGGGTAAACTAACAGAAGCAGAAACGTGCTTCTTGCAGATGGTGGAGAAGGGGCATAAGCCAAGTAATGTTTCCTTTAGAAGGATCAAGGTGCTTATGGAACTGGCAAACAAGCATGAGGCCCTCAAGAACTTGACAGAGAAAATGGCACTTTTTGGCTCTTCAATCCATCTTCCTGAGAGTATGGATAGGTCAACAGAGGTACCGCGCTCAGAATCACTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

560

Amino Acids

64.06

Weight (kDa)

9.12

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	231 - 275	9e-07	PPR repeat family
PPR_3	PF13812	286 - 342	4.5e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	289 - 389	1.6e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	293 - 325	6.1e-09	PPR repeat
PPR_2	PF13041	296 - 343	8e-17	PPR repeat family
PPR_long	PF17177	298 - 412	1e-09	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	299 - 328	7.6e-08	PPR repeat
PPR_3	PF13812	319 - 375	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	328 - 360	7.8e-06	PPR repeat
PPR	PF01535	334 - 364	8.9e-07	PPR repeat
PPR_2	PF13041	340 - 379	1.3e-06	PPR repeat family
PPR_3	PF13812	355 - 412	8.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	366 - 413	4.4e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02420
fragaria_vesca	FvH4_5g32610 FvH4_5g32610 FvH4_5g32610
malus_domestica	MD08G1216300.v1.1
prunus_persica	Prupe.1G549200_v2.0.a1
pyrus_communis	pycom08g18730
rosa_chinensis	RchiOBHm_Chr7g0230241
rosa_laevigata	RLG00000001507
rosa_multiflora	Rmu_sc0002822.1_g000019 Rmu_sc0008506.1_g000024
rosa_roxburghii	Rroxscaffold_3G00230280
rosa_rugosa	Rorug07G0260000
rosa_samantha	Rh7AG409400 Rh7BG389300 Rh7CG428000 Rh7DG407000
rosa_wichuraiana	Rw0G018590 Rw0G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AatII	GACGTC	1 cut(s)	285
Acc65I	GGTACC	1 cut(s)	1657
AccB1I	GGYRCC	1 cut(s)	1657
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccI	GTMKAC	2 cut(s)	5, 294
AccII	CGCG	2 cut(s)	975, 1663
AciI	CCGC	4 cut(s)	77, 298, 397, 1661
AclWI	GGATC	1 cut(s)	1547
AcoI	YGGCCR	2 cut(s)	119, 127
AcsI	RAATTY	3 cut(s)	577, 686, 1129
AcuI	CTGAAG	2 cut(s)	413, 794
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	3 cut(s)	216, 595, 1659
AfiI	CCNNNNNNNGG	3 cut(s)	117, 427, 1536
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	7 cut(s)	334, 346, 445, 670, 706, 1069, 1620
AhdI	GACNNNNNGTC	2 cut(s)	77, 726
AjuI	GAANNNNNNNTTGG	2 cut(s)	1510, 1542
AleI	CACNNNNGTG	1 cut(s)	1318
AluBI	AGCT	9 cut(s)	312, 614, 676, 698, 772, 783, 1084, 1272, 1378
AluI	AGCT	9 cut(s)	312, 614, 676, 698, 772, 783, 1084, 1272, 1378
Alw26I	GTCTC	2 cut(s)	208, 638
AlwI	GGATC	1 cut(s)	1547
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	6 cut(s)	50, 63, 119, 127, 788, 1575
ApeKI	GCWGC	3 cut(s)	1106, 1118, 1375
ApoI	RAATTY	3 cut(s)	577, 686, 1129
Asp718I	GGTACC	1 cut(s)	1657
AspLEI	GCGC	2 cut(s)	975, 1665
AspS9I	GGNCC	2 cut(s)	79, 1576
AsuHPI	GGTGA	3 cut(s)	970, 981, 1166
AsuII	TTCGAA	1 cut(s)	531
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	684
BaeI	ACNNNNGTAYC	2 cut(s)	1641, 1674
BalI	TGGCCA	2 cut(s)	121, 129
BanI	GGYRCC	1 cut(s)	1657
BauI	CACGAG	1 cut(s)	115
BbvI	GCAGC	3 cut(s)	1105, 1118, 1387
BccI	CCATC	6 cut(s)	191, 595, 955, 1165, 1489, 1632
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BclI	TGATCA	1 cut(s)	1332
BcoDI	GTCTC	2 cut(s)	208, 638
BfaI	CTAG	4 cut(s)	48, 402, 615, 753
BisI	GCNGC	3 cut(s)	1107, 1119, 1376
BlsI	GCNGC	3 cut(s)	1108, 1120, 1377
Bme18I	GGWCC	1 cut(s)	79
BmeRI	GACNNNNNGTC	2 cut(s)	77, 726
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	79, 1576
BmiI	GGNNCC	1 cut(s)	1659
BmrI	ACTGGG	2 cut(s)	462, 1305
BmsI	GCATC	3 cut(s)	739, 1147, 1278
BmuI	ACTGGG	2 cut(s)	462, 1305
Bpu10I	CCTNAGC	1 cut(s)	624
Bpu14I	TTCGAA	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	1565
BsaAI	YACGTR	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	4 cut(s)	66, 168, 412, 846
BsaXI	ACNNNNNCTCC	4 cut(s)	935, 965, 1073, 1103
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 427, 1536
Bse1I	ACTGG	4 cut(s)	155, 457, 1300, 1563
Bse3DI	GCAATG	3 cut(s)	188, 1137, 1370
BseDI	CCNNGG	4 cut(s)	66, 168, 412, 846
BseLI	CCNNNNNNNGG	3 cut(s)	117, 427, 1536
BseMI	GCAATG	3 cut(s)	188, 1137, 1370
BseMII	CTCAG	2 cut(s)	1623, 1680
BseNI	ACTGG	4 cut(s)	155, 457, 1300, 1563
BseRI	GAGGAG	4 cut(s)	234, 579, 875, 1190
BseSI	GKGCMC	1 cut(s)	684
BseXI	GCAGC	3 cut(s)	1105, 1118, 1387
Bsh1236I	CGCG	2 cut(s)	975, 1663
BshFI	GGCC	6 cut(s)	52, 65, 121, 129, 790, 1577
BshNI	GGYRCC	1 cut(s)	1657
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	791
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	3 cut(s)	117, 427, 1536
BsmAI	GTCTC	2 cut(s)	208, 638
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	6 cut(s)	52, 65, 121, 129, 790, 1577
BsoBI	CYCGRG	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp143I	GATC	3 cut(s)	558, 1332, 1539
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	4 cut(s)	77, 298, 397, 1661
BspANI	GGCC	6 cut(s)	52, 65, 121, 129, 790, 1577
BspCNI	CTCAG	2 cut(s)	1624, 1679
BspFNI	CGCG	2 cut(s)	975, 1663
BspLI	GGNNCC	1 cut(s)	1659
BspPI	GGATC	1 cut(s)	1547
BspQI	GCTCTTC	1 cut(s)	1621
BspT104I	TTCGAA	1 cut(s)	531
BspT107I	GGYRCC	1 cut(s)	1657
BsrDI	GCAATG	3 cut(s)	188, 1137, 1370
BsrI	ACTGG	4 cut(s)	155, 457, 1300, 1563
BssECI	CCNNGG	4 cut(s)	66, 168, 412, 846
BssMI	GATC	3 cut(s)	558, 1332, 1539
BssNI	GRCGYC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	115
BssT1I	CCWWGG	2 cut(s)	168, 412
Bst2BI	CACGAG	1 cut(s)	115
Bst4CI	ACNGT	5 cut(s)	278, 292, 598, 649, 1317
Bst6I	CTCTTC	3 cut(s)	262, 731, 1621
BstACI	GRCGYC	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	1115
BstBAI	YACGTR	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	108, 399
BstDEI	CTNAG	3 cut(s)	624, 1632, 1666
BstDSI	CCRYGG	1 cut(s)	412
BstENI	CCTNNNNNAGG	1 cut(s)	1534
BstFNI	CGCG	2 cut(s)	975, 1663
BstHHI	GCGC	2 cut(s)	975, 1665
BstKTI	GATC	3 cut(s)	561, 1335, 1542
BstMAI	GTCTC	2 cut(s)	208, 638
BstMBI	GATC	3 cut(s)	558, 1332, 1539
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 620, 796, 1115
BstNSI	RCATGY	3 cut(s)	31, 110, 1327
BstSLI	GKGCMC	1 cut(s)	684
BstSNI	TACGTA	1 cut(s)	101
BstUI	CGCG	2 cut(s)	975, 1663
BstV1I	GCAGC	3 cut(s)	1105, 1118, 1387
BsuRI	GGCC	6 cut(s)	52, 65, 121, 129, 790, 1577
BtgI	CCRYGG	1 cut(s)	412
BtsIMutI	CAGTG	3 cut(s)	283, 288, 450
Cac8I	GCNNGC	2 cut(s)	108, 399
CfoI	GCGC	2 cut(s)	975, 1665
Cfr13I	GGNCC	2 cut(s)	79, 1576
Csp6I	GTAC	3 cut(s)	215, 594, 1658
CviAII	CATG	5 cut(s)	28, 107, 413, 1324, 1571
CviQI	GTAC	3 cut(s)	215, 594, 1658
DdeI	CTNAG	3 cut(s)	624, 1632, 1666
DpnI	GATC	3 cut(s)	560, 1334, 1541
DpnII	GATC	3 cut(s)	558, 1332, 1539
DrdI	GACNNNNNNGTC	1 cut(s)	281
DriI	GACNNNNNGTC	2 cut(s)	77, 726
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	2 cut(s)	119, 127
Eam1104I	CTCTTC	3 cut(s)	262, 731, 1621
Eam1105I	GACNNNNNGTC	2 cut(s)	77, 726
EarI	CTCTTC	3 cut(s)	262, 731, 1621
Eco105I	TACGTA	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	168, 412
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	413, 794
Eco88I	CYCGRG	1 cut(s)	434
EcoNI	CCTNNNNNAGG	1 cut(s)	1534
EcoO109I	RGGNCCY	1 cut(s)	1576
EcoRI	GAATTC	1 cut(s)	686
EcoT14I	CCWWGG	2 cut(s)	168, 412
EcoT22I	ATGCAT	1 cut(s)	1293
ErhI	CCWWGG	2 cut(s)	168, 412
FaeI	CATG	5 cut(s)	31, 110, 416, 1327, 1574
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 767, 799
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	5 cut(s)	27, 106, 412, 1323, 1570
FauI	CCCGC	1 cut(s)	390
FbaI	TGATCA	1 cut(s)	1332
FblI	GTMKAC	2 cut(s)	5, 294
Fnu4HI	GCNGC	3 cut(s)	1107, 1119, 1376
Fsp4HI	GCNGC	3 cut(s)	1107, 1119, 1376
FspBI	CTAG	4 cut(s)	48, 402, 615, 753
GlaI	GCGC	2 cut(s)	974, 1664
GluI	GCNGC	3 cut(s)	1107, 1119, 1376
HaeIII	GGCC	6 cut(s)	52, 65, 121, 129, 790, 1577
HapII	CCGG	1 cut(s)	791
HhaI	GCGC	2 cut(s)	975, 1665
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	5 cut(s)	31, 110, 416, 1327, 1574
Hin6I	GCGC	2 cut(s)	973, 1663
HinP1I	GCGC	2 cut(s)	973, 1663
HincII	GTYRAC	3 cut(s)	6, 286, 1650
HindII	GTYRAC	3 cut(s)	6, 286, 1650
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	3 cut(s)	721, 1198, 1670
HpaII	CCGG	1 cut(s)	791
HphI	GGTGA	3 cut(s)	970, 981, 1166
Hpy166II	GTNNAC	5 cut(s)	6, 286, 295, 1463, 1650
Hpy188I	TCNGA	6 cut(s)	393, 838, 882, 1347, 1429, 1669
Hpy188III	TCNNGA	9 cut(s)	94, 434, 562, 670, 731, 1330, 1396, 1582, 1631
Hpy8I	GTNNAC	5 cut(s)	6, 286, 295, 1463, 1650
Hpy99I	CGWCG	2 cut(s)	838, 980
HpyAV	CCTTC	6 cut(s)	29, 100, 1063, 1072, 1498, 1530
HpyCH4III	ACNGT	5 cut(s)	278, 292, 598, 649, 1317
HpyCH4IV	ACGT	3 cut(s)	100, 282, 1481
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 620, 796, 1115
HpyF3I	CTNAG	3 cut(s)	624, 1632, 1666
HpySE526I	ACGT	3 cut(s)	100, 282, 1481
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	5 cut(s)	31, 110, 416, 1327, 1574
HspAI	GCGC	2 cut(s)	973, 1663
KpnI	GGTACC	1 cut(s)	1661
Ksp22I	TGATCA	1 cut(s)	1332
Kzo9I	GATC	3 cut(s)	558, 1332, 1539
LguI	GCTCTTC	1 cut(s)	1621
LmnI	GCTCC	4 cut(s)	170, 317, 1081, 1269
Lsp1109I	GCAGC	3 cut(s)	1105, 1118, 1387
LweI	GCATC	3 cut(s)	739, 1147, 1278
MaeI	CTAG	4 cut(s)	48, 402, 615, 753
MaeII	ACGT	3 cut(s)	100, 282, 1481
MaeIII	GTNAC	2 cut(s)	278, 1250
MalI	GATC	3 cut(s)	560, 1334, 1541
MboI	GATC	3 cut(s)	558, 1332, 1539
MboII	GAAGA	6 cut(s)	249, 528, 748, 1231, 1608, 1619
MfeI	CAATTG	2 cut(s)	83, 123
MhlI	GDGCHC	1 cut(s)	684
MlsI	TGGCCA	2 cut(s)	121, 129
MluCI	AATT	9 cut(s)	56, 83, 123, 232, 577, 686, 904, 1129, 1219
MluNI	TGGCCA	2 cut(s)	121, 129
MlyI	GAGTC	2 cut(s)	715, 1207
MmeI	TCCRAC	2 cut(s)	806, 816
Mox20I	TGGCCA	2 cut(s)	121, 129
Mph1103I	ATGCAT	1 cut(s)	1293
MscI	TGGCCA	2 cut(s)	121, 129
MseI	TTAA	2 cut(s)	807, 954
MslI	CAYNNNNRTG	1 cut(s)	1318
Msp20I	TGGCCA	2 cut(s)	121, 129
MspA1I	CMGCKG	1 cut(s)	1378
MspI	CCGG	1 cut(s)	791
MunI	CAATTG	2 cut(s)	83, 123
MvnI	CGCG	2 cut(s)	975, 1663
MwoI	GCNNNNNNNGC	4 cut(s)	135, 620, 796, 1115
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	3 cut(s)	558, 1332, 1539
NlaIII	CATG	5 cut(s)	31, 110, 416, 1327, 1574
NlaIV	GGNNCC	1 cut(s)	1659
NmeAIII	GCCGAG	2 cut(s)	91, 871
NmuCI	GTSAC	2 cut(s)	278, 1250
NsiI	ATGCAT	1 cut(s)	1293
NspI	RCATGY	3 cut(s)	31, 110, 1327
NspV	TTCGAA	1 cut(s)	531
OliI	CACNNNNGTG	1 cut(s)	1318
PaeI	GCATGC	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	434
PciI	ACATGT	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	1621
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	1670
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	1108, 1120, 1377
PleI	GAGTC	2 cut(s)	715, 1206
PpsI	GAGTC	2 cut(s)	715, 1206
Ppu21I	YACGTR	1 cut(s)	101
PscI	ACATGT	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	1659
PspPI	GGNCC	2 cut(s)	79, 1576
PvuII	CAGCTG	1 cut(s)	1378
RsaI	GTAC	3 cut(s)	216, 595, 1659
RsaNI	GTAC	3 cut(s)	215, 594, 1658
RseI	CAYNNNNRTG	1 cut(s)	1318
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	1621
SaqAI	TTAA	2 cut(s)	807, 954
SatI	GCNGC	3 cut(s)	1107, 1119, 1376
Sau3AI	GATC	3 cut(s)	558, 1332, 1539
Sau96I	GGNCC	2 cut(s)	79, 1576
SchI	GAGTC	2 cut(s)	715, 1207
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	3 cut(s)	739, 1147, 1278
Sfr274I	CTCGAG	1 cut(s)	434
SfuI	TTCGAA	1 cut(s)	531
SinI	GGWCC	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	1318
SmlI	CTYRAG	2 cut(s)	434, 1580
SmoI	CTYRAG	2 cut(s)	434, 1580
SnaBI	TACGTA	1 cut(s)	101
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	9 cut(s)	56, 83, 123, 232, 577, 686, 904, 1129, 1219
SsiI	CCGC	4 cut(s)	77, 298, 397, 1661
SspMI	CTAG	4 cut(s)	48, 402, 615, 753
StyI	CCWWGG	2 cut(s)	168, 412
TaaI	ACNGT	5 cut(s)	278, 292, 598, 649, 1317
TaiI	ACGT	3 cut(s)	103, 285, 1484
TasI	AATT	9 cut(s)	56, 83, 123, 232, 577, 686, 904, 1129, 1219
TfiI	GAWTC	1 cut(s)	1670
Tru1I	TTAA	2 cut(s)	807, 954
Tru9I	TTAA	2 cut(s)	807, 954
TscAI	CASTG	3 cut(s)	283, 295, 457
TseFI	GTSAC	2 cut(s)	278, 1250
TseI	GCWGC	3 cut(s)	1106, 1118, 1375
Tsp45I	GTSAC	2 cut(s)	278, 1250
TspDTI	ATGAA	2 cut(s)	1091, 1401
TspRI	CASTG	3 cut(s)	283, 295, 457
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	79
XagI	CCTNNNNNAGG	1 cut(s)	1534
XapI	RAATTY	3 cut(s)	577, 686, 1129
XceI	RCATGY	3 cut(s)	31, 110, 1327
XhoI	CTCGAG	1 cut(s)	434
XmiI	GTMKAC	2 cut(s)	5, 294
XspI	CTAG	4 cut(s)	48, 402, 615, 753
ZraI	GACGTC	1 cut(s)	283
Zsp2I	ATGCAT	1 cut(s)	1293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.