FvH4_5g32610

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012017
Physical Location & Seq
Reverse (-)
23534930 .. 23540847
5918 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32610.t1

Sequence Viewer

Length: 1515 bp
ATGGCAGCAATACGCAAACCCCTCTCATCACCATTCTCCAGGTACTTCCCTCAAACCCCATTTCTCTTCTCTCTCCCTCGACTCCTCTCTTCCCAATCCTCAACCCCCAATGACGTCGACACCGTCTACTGCATCGTCAGCAGCTCCGCCCACTCCAAAAACTTGAAGCAAAGCTTGAAATCCTGCGGTGTTTTCCTCACGAATGATCTGACAGATGAGGTTCTCAAACGGGCTCGGTTCAGCCACGGGAACCCATTACAGGCTCTCGAGTTCTTCAACTACACTGGGAACAGAAGAGGGTTCTATCACACCAGTTTCTCACTCGACACTATGCTTTACATGTTGGGAAGAAGTCGAATGTTTAAAAAAATGTGGGAGGTTTTAGTTGAGACCAAACATAAGGACAGGAGTTTGATAACTCCGCGAACCGTGATGGTTGTGTTAGCTAGGATTGCTAAGGTTTGTTCTGTTAGGGAGACAGTGGAGTGTTTCAAGAAGTTCAAGAAGCTTGTGCCGGAGTTCGATACGGCTTGTTTCAATTCATTGTTGAGGACTCTTTGTCAGGAGAAGAGCATGACAGATGCTAGGAATGTGTATCATAAGCTGAAGCATAGCTTTGAGCCGAATTTGCAGACATTTAATATATTGTTGTCTGGTTGGAAGTCCTCTGAGGAAGCCGAGGGGTTTTTCGAGGAGATGAGGGAGTTGGGTTTGAAGCCTGATGTTGTTTCGTATAATTGTTTGATTGATGTTTATAGTAAGAATAGAGAAATGGAGAAGGTGTTTAAGGTGATGGAGAAAATGCGCGACGAGGAGATATGGCCGGATAAAATTACATATACTTGTGTCATTGGGGGATTTGGGTTGGTTGGTCAGCCGGATAAGGCCAGAGATGTGTTGAAGGAAATGAAGGAGCTCGGGTGCTACCCGGATGTTGCAGCATACAATGCTGCTATTAGGAATTTTTGCATTGCAAAGAGGCTTGGTGATGCTAATGGGTTGATGGAGGAGATGATGAGTAATGGTTTGAGTCCGAATGCAACTACTTACAATTTGTTCTTTCGGGTTTTCTTCTGGTCGAGTGACTTGCAGAACTCTTGGAGCTTGTATGGGAGAATGATGTATATGGGGTGTTTGCCAAATACACAGTCGTGCATGTTTTTGATCAGGTTGTTTAGGAAGTTGGAAAAGGTGGATTTGGCATTGCAGCTGTGGAATGATATGATTGAGAGGGGTTTTGGATCTTATATATTGGTGTCTGATGTGCTGTTTGATTTGCTATGTGATATGGGTAAACTAACAGAAGCAGAAACGTGCTTCTTGCAGATGGTGGAGAAGGGGCATAAGCCAAGTAATGTTTCCTTTAGAAGGATCAAGGTGCTTATGGAACTGGCAAACAAGCATGAGGCCCTCAAGAACTTGACAGAGAAAATGGCACTTTTTGGCTCTTCAATCCATCTTCCTGAGAGTATGGATAGGTCAACAGTGGTACCTTGCTCAGAAGCACTTGCTTGA

Protein Analysis

505

Amino Acids

57.9

Weight (kDa)

8.74

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 175 - 219 3.6e-07 PPR repeat family
PPR_3 PF13812 230 - 288 7.8e-11 Pentatricopeptide repeat domain
PPR_long PF17177 231 - 356 2.1e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 237 - 269 6.6e-07 PPR repeat
PPR_2 PF13041 240 - 287 1e-14 PPR repeat family
PPR PF01535 243 - 271 7.1e-07 PPR repeat
PPR_2 PF13041 275 - 323 8.8e-11 PPR repeat family
PPR PF01535 278 - 308 6.7e-07 PPR repeat
PPR_3 PF13812 299 - 356 3.6e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 310 - 357 3.2e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012017)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02420
fragaria_vesca FvH4_5g32610 FvH4_5g32610 FvH4_5g32610
malus_domestica MD08G1216300.v1.1
prunus_persica Prupe.1G549200_v2.0.a1
pyrus_communis pycom08g18730
rosa_chinensis RchiOBHm_Chr7g0230241
rosa_laevigata RLG00000001507
rosa_multiflora Rmu_sc0002822.1_g000019 Rmu_sc0008506.1_g000024
rosa_roxburghii Rroxscaffold_3G00230280
rosa_rugosa Rorug07G0260000
rosa_samantha Rh7AG409400 Rh7BG389300 Rh7CG428000 Rh7DG407000
rosa_wichuraiana Rw0G018590 Rw0G022620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
Acc65I GGTACC 1 cut(s) 1489
AccB1I GGYRCC 1 cut(s) 1489
AccI GTMKAC 2 cut(s) 117, 126
AccII CGCG 2 cut(s) 424, 807
AciI CCGC 3 cut(s) 147, 186, 422
AclWI GGATC 2 cut(s) 1249, 1379
AcoI YGGCCR 1 cut(s) 821
AcsI RAATTY 2 cut(s) 625, 961
AcuI CTGAAG 1 cut(s) 626
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 2 cut(s) 44, 1491
AfiI CCNNNNNNNGG 2 cut(s) 259, 1368
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 9 cut(s) 166, 178, 277, 493, 502, 538, 715, 901, 1452
AhdI GACNNNNNGTC 1 cut(s) 558
AjnI CCWGG 1 cut(s) 38
AjuI GAANNNNNNNTTGG 2 cut(s) 1342, 1374
AleI CACNNNNGTG 1 cut(s) 1150
AluBI AGCT 9 cut(s) 144, 174, 446, 508, 604, 615, 916, 1104, 1210
AluI AGCT 9 cut(s) 144, 174, 446, 508, 604, 615, 916, 1104, 1210
Alw21I GWGCWC 1 cut(s) 918
Alw26I GTCTC 2 cut(s) 383, 470
AlwI GGATC 2 cut(s) 1249, 1379
Ama87I CYCGRG 2 cut(s) 266, 917
AoxI GGCC 3 cut(s) 821, 885, 1407
ApeKI GCWGC 5 cut(s) 5, 141, 938, 950, 1207
ApoI RAATTY 2 cut(s) 625, 961
ArsI GACNNNNNNTTYG 2 cut(s) 1133, 1165
Asp718I GGTACC 1 cut(s) 1489
AspLEI GCGC 1 cut(s) 807
AspS9I GGNCC 1 cut(s) 1408
AsuC2I CCSGG 1 cut(s) 929
AsuHPI GGTGA 3 cut(s) 21, 802, 998
AvaI CYCGRG 2 cut(s) 266, 917
BaeI ACNNNNGTAYC 2 cut(s) 1473, 1506
BanI GGYRCC 1 cut(s) 1489
BanII GRGCYC 2 cut(s) 235, 918
Bbv12I GWGCWC 1 cut(s) 918
BbvI GCAGC 5 cut(s) 17, 153, 937, 950, 1219
BccI CCATC 5 cut(s) 427, 787, 997, 1321, 1464
BceAI ACGGC 1 cut(s) 543
BcgI CGANNNNNNTGC 2 cut(s) 1069, 1103
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 1 cut(s) 1164
BcnI CCSGG 1 cut(s) 929
BcoDI GTCTC 2 cut(s) 383, 470
BfaI CTAG 2 cut(s) 447, 585
BisI GCNGC 5 cut(s) 6, 142, 939, 951, 1208
BlsI GCNGC 5 cut(s) 7, 143, 940, 952, 1209
Bme1390I CCNGG 2 cut(s) 40, 929
BmeRI GACNNNNNGTC 1 cut(s) 558
BmeT110I CYCGRG 2 cut(s) 266, 917
BmgT120I GGNCC 1 cut(s) 1408
BmiI GGNNCC 2 cut(s) 251, 1491
BmrFI CCNGG 2 cut(s) 40, 929
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 3 cut(s) 141, 571, 979
BmuI ACTGGG 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 22
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 1397
BpuMI CCSGG 1 cut(s) 929
BsaHI GRCGYC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 244, 678
BsaXI ACNNNNNCTCC 4 cut(s) 767, 797, 905, 935
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 1368
Bse1I ACTGG 3 cut(s) 289, 312, 1395
Bse3DI GCAATG 2 cut(s) 969, 1202
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 244, 678
BseGI GGATG 1 cut(s) 937
BseLI CCNNNNNNNGG 2 cut(s) 259, 1368
BseMI GCAATG 2 cut(s) 969, 1202
BseMII CTCAG 3 cut(s) 660, 1455, 1512
BseNI ACTGG 3 cut(s) 289, 312, 1395
BseRI GAGGAG 4 cut(s) 74, 707, 827, 1022
BseXI GCAGC 5 cut(s) 17, 153, 937, 950, 1219
Bsh1236I CGCG 2 cut(s) 424, 807
BshFI GGCC 3 cut(s) 823, 887, 1409
BshNI GGYRCC 1 cut(s) 1489
BsiHKAI GWGCWC 1 cut(s) 918
BsiHKCI CYCGRG 2 cut(s) 266, 917
BsiSI CCGG 4 cut(s) 515, 824, 878, 929
BslI CCNNNNNNNGG 2 cut(s) 259, 1368
BsmAI GTCTC 2 cut(s) 383, 470
BsmI GAATGC 1 cut(s) 1042
BsnI GGCC 3 cut(s) 823, 887, 1409
Bso31I GGTCTC 1 cut(s) 383
BsoBI CYCGRG 2 cut(s) 266, 917
Bsp1286I GDGCHC 2 cut(s) 235, 918
Bsp143I GATC 4 cut(s) 205, 1164, 1241, 1371
BspACI CCGC 3 cut(s) 147, 186, 422
BspANI GGCC 3 cut(s) 823, 887, 1409
BspCNI CTCAG 3 cut(s) 661, 1456, 1511
BspFNI CGCG 2 cut(s) 424, 807
BspLI GGNNCC 2 cut(s) 251, 1491
BspPI GGATC 2 cut(s) 1249, 1379
BspQI GCTCTTC 2 cut(s) 563, 1453
BspT107I GGYRCC 1 cut(s) 1489
BspTNI GGTCTC 1 cut(s) 383
BsrDI GCAATG 2 cut(s) 969, 1202
BsrI ACTGG 3 cut(s) 289, 312, 1395
BssECI CCNNGG 2 cut(s) 244, 678
BssMI GATC 4 cut(s) 205, 1164, 1241, 1371
BssNI GRCGYC 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 5 cut(s) 124, 430, 481, 1149, 1486
Bst6I CTCTTC 5 cut(s) 71, 94, 289, 563, 1453
BstACI GRCGYC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 947
BstDEI CTNAG 4 cut(s) 456, 669, 1464, 1498
BstDSI CCRYGG 1 cut(s) 244
BstENI CCTNNNNNAGG 1 cut(s) 1366
BstF5I GGATG 1 cut(s) 937
BstFNI CGCG 2 cut(s) 424, 807
BstHHI GCGC 1 cut(s) 807
BstKTI GATC 4 cut(s) 208, 1167, 1244, 1374
BstMAI GTCTC 2 cut(s) 383, 470
BstMBI GATC 4 cut(s) 205, 1164, 1241, 1371
BstMWI GCNNNNNNNGC 4 cut(s) 138, 452, 628, 947
BstNI CCWGG 1 cut(s) 40
BstNSI RCATGY 2 cut(s) 343, 1159
BstSCI CCNGG 2 cut(s) 38, 927
BstUI CGCG 2 cut(s) 424, 807
BstV1I GCAGC 5 cut(s) 17, 153, 937, 950, 1219
BstX2I RGATCY 1 cut(s) 1241
BstYI RGATCY 1 cut(s) 1241
BsuRI GGCC 3 cut(s) 823, 887, 1409
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 937
BtsIMutI CAGTG 3 cut(s) 282, 486, 1491
CfoI GCGC 1 cut(s) 807
Cfr13I GGNCC 1 cut(s) 1408
Csp6I GTAC 2 cut(s) 43, 1490
CviAII CATG 4 cut(s) 340, 574, 1156, 1403
CviQI GTAC 2 cut(s) 43, 1490
DdeI CTNAG 4 cut(s) 456, 669, 1464, 1498
DpnI GATC 4 cut(s) 207, 1166, 1243, 1373
DpnII GATC 4 cut(s) 205, 1164, 1241, 1371
DraI TTTAAA 1 cut(s) 364
DriI GACNNNNNGTC 1 cut(s) 558
EaeI YGGCCR 1 cut(s) 821
Eam1104I CTCTTC 5 cut(s) 71, 94, 289, 563, 1453
Eam1105I GACNNNNNGTC 1 cut(s) 558
EarI CTCTTC 5 cut(s) 71, 94, 289, 563, 1453
EciI GGCGGA 1 cut(s) 136
Ecl136II GAGCTC 1 cut(s) 916
Eco24I GRGCYC 2 cut(s) 235, 918
Eco31I GGTCTC 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 916
Eco57I CTGAAG 1 cut(s) 626
Eco88I CYCGRG 2 cut(s) 266, 917
EcoICRI GAGCTC 1 cut(s) 916
EcoNI CCTNNNNNAGG 1 cut(s) 1366
EcoO109I RGGNCCY 1 cut(s) 1408
EcoRII CCWGG 1 cut(s) 38
EcoT38I GRGCYC 2 cut(s) 235, 918
FaeI CATG 4 cut(s) 343, 577, 1159, 1406
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 599, 631
FatI CATG 4 cut(s) 339, 573, 1155, 1402
FbaI TGATCA 1 cut(s) 1164
FblI GTMKAC 2 cut(s) 117, 126
Fnu4HI GCNGC 5 cut(s) 6, 142, 939, 951, 1208
FokI GGATG 1 cut(s) 944
FriOI GRGCYC 2 cut(s) 235, 918
Fsp4HI GCNGC 5 cut(s) 6, 142, 939, 951, 1208
FspBI CTAG 2 cut(s) 447, 585
GlaI GCGC 1 cut(s) 806
GluI GCNGC 5 cut(s) 6, 142, 939, 951, 1208
GsuI CTGGAG 1 cut(s) 22
HaeIII GGCC 3 cut(s) 823, 887, 1409
HapII CCGG 4 cut(s) 515, 824, 878, 929
HhaI GCGC 1 cut(s) 807
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 4 cut(s) 343, 577, 1159, 1406
Hin6I GCGC 1 cut(s) 805
HinP1I GCGC 1 cut(s) 805
HincII GTYRAC 2 cut(s) 118, 1482
HindII GTYRAC 2 cut(s) 118, 1482
HindIII AAGCTT 2 cut(s) 172, 506
HinfI GANTC 3 cut(s) 81, 553, 1030
HpaII CCGG 4 cut(s) 515, 824, 878, 929
HphI GGTGA 3 cut(s) 21, 802, 998
Hpy166II GTNNAC 4 cut(s) 118, 127, 1295, 1482
Hpy188I TCNGA 5 cut(s) 210, 670, 1035, 1261, 1501
Hpy188III TCNNGA 7 cut(s) 199, 266, 493, 502, 563, 1414, 1463
Hpy8I GTNNAC 4 cut(s) 118, 127, 1295, 1482
Hpy99I CGWCG 2 cut(s) 119, 812
HpyAV CCTTC 5 cut(s) 772, 895, 904, 1330, 1362
HpyCH4III ACNGT 5 cut(s) 124, 430, 481, 1149, 1486
HpyCH4IV ACGT 2 cut(s) 114, 1313
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 452, 628, 947
HpyF3I CTNAG 4 cut(s) 456, 669, 1464, 1498
HpySE526I ACGT 2 cut(s) 114, 1313
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 4 cut(s) 343, 577, 1159, 1406
HspAI GCGC 1 cut(s) 805
KpnI GGTACC 1 cut(s) 1493
Ksp22I TGATCA 1 cut(s) 1164
Kzo9I GATC 4 cut(s) 205, 1164, 1241, 1371
LguI GCTCTTC 2 cut(s) 563, 1453
LmnI GCTCC 3 cut(s) 149, 913, 1101
Lsp1109I GCAGC 5 cut(s) 17, 153, 937, 950, 1219
LweI GCATC 3 cut(s) 141, 571, 979
MaeI CTAG 2 cut(s) 447, 585
MaeII ACGT 2 cut(s) 114, 1313
MaeIII GTNAC 1 cut(s) 1082
MalI GATC 4 cut(s) 207, 1166, 1243, 1373
MboI GATC 4 cut(s) 205, 1164, 1241, 1371
MboII GAAGA 9 cut(s) 58, 81, 265, 306, 360, 580, 1063, 1440, 1451
MflI RGATCY 1 cut(s) 1241
MhlI GDGCHC 2 cut(s) 235, 918
MluCI AATT 6 cut(s) 538, 625, 736, 831, 961, 1051
MlyI GAGTC 3 cut(s) 75, 547, 1039
MmeI TCCRAC 2 cut(s) 638, 1164
MseI TTAA 3 cut(s) 363, 639, 786
MslI CAYNNNNRTG 1 cut(s) 1150
MspA1I CMGCKG 1 cut(s) 1210
MspI CCGG 4 cut(s) 515, 824, 878, 929
MspR9I CCNGG 2 cut(s) 40, 929
Mva1269I GAATGC 1 cut(s) 1042
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 2 cut(s) 424, 807
MwoI GCNNNNNNNGC 4 cut(s) 138, 452, 628, 947
NciI CCSGG 1 cut(s) 929
NdeII GATC 4 cut(s) 205, 1164, 1241, 1371
NlaIII CATG 4 cut(s) 343, 577, 1159, 1406
NlaIV GGNNCC 2 cut(s) 251, 1491
NmeAIII GCCGAG 1 cut(s) 703
NmuCI GTSAC 1 cut(s) 1082
NspI RCATGY 2 cut(s) 343, 1159
OliI CACNNNNGTG 1 cut(s) 1150
PaeR7I CTCGAG 1 cut(s) 266
PciI ACATGT 1 cut(s) 339
PciSI GCTCTTC 2 cut(s) 563, 1453
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 1042
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 5 cut(s) 7, 143, 940, 952, 1209
PleI GAGTC 3 cut(s) 75, 547, 1038
PpsI GAGTC 3 cut(s) 75, 547, 1038
PscI ACATGT 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 918
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 251, 1491
PspPI GGNCC 1 cut(s) 1408
PsuI RGATCY 1 cut(s) 1241
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 1210
RsaI GTAC 2 cut(s) 44, 1491
RsaNI GTAC 2 cut(s) 43, 1490
RseI CAYNNNNRTG 1 cut(s) 1150
SacI GAGCTC 1 cut(s) 918
SalI GTCGAC 1 cut(s) 116
SapI GCTCTTC 2 cut(s) 563, 1453
SaqAI TTAA 3 cut(s) 363, 639, 786
SatI GCNGC 5 cut(s) 6, 142, 939, 951, 1208
Sau3AI GATC 4 cut(s) 205, 1164, 1241, 1371
Sau96I GGNCC 1 cut(s) 1408
SchI GAGTC 3 cut(s) 75, 547, 1039
ScrFI CCNGG 2 cut(s) 40, 929
SduI GDGCHC 2 cut(s) 235, 918
SfaNI GCATC 3 cut(s) 141, 571, 979
Sfr274I CTCGAG 1 cut(s) 266
SlaI CTCGAG 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 1150
SmlI CTYRAG 2 cut(s) 266, 1412
SmoI CTYRAG 2 cut(s) 266, 1412
Sse9I AATT 6 cut(s) 538, 625, 736, 831, 961, 1051
SsiI CCGC 3 cut(s) 147, 186, 422
SspMI CTAG 2 cut(s) 447, 585
SstI GAGCTC 1 cut(s) 918
StyD4I CCNGG 2 cut(s) 38, 927
TaaI ACNGT 5 cut(s) 124, 430, 481, 1149, 1486
TaiI ACGT 2 cut(s) 117, 1316
TaqI TCGA 8 cut(s) 79, 117, 267, 324, 355, 522, 690, 1079
TasI AATT 6 cut(s) 538, 625, 736, 831, 961, 1051
Tru1I TTAA 3 cut(s) 363, 639, 786
Tru9I TTAA 3 cut(s) 363, 639, 786
TscAI CASTG 3 cut(s) 289, 486, 1491
TseFI GTSAC 1 cut(s) 1082
TseI GCWGC 5 cut(s) 5, 141, 938, 950, 1207
Tsp45I GTSAC 1 cut(s) 1082
TspDTI ATGAA 2 cut(s) 531, 923
TspRI CASTG 3 cut(s) 289, 486, 1491
Tth111I GACNNNGTC 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 1366
XapI RAATTY 2 cut(s) 625, 961
XceI RCATGY 2 cut(s) 343, 1159
XhoI CTCGAG 1 cut(s) 266
XmiI GTMKAC 2 cut(s) 117, 126
XspI CTAG 2 cut(s) 447, 585
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.