Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012017

Physical Location & Seq

Genomic Coordinates Reverse (-)

56921229 .. 56922749

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG407000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGATGGCACTAAAAGCTAAACCCGTCTCATCCCCATCACCATTTTTCAGGTACTCGCCGCAAAACCCAATTTTCTTTCTCCCTCGATTCCTCTCTTCGCAAACCCCAATCGACAGTGACGTCGACACTGTCTACCGCATAGTCAGTAGCTCCACCCACTCCAAAAACTTGAAGCAAAACTTGAAATCGAGTGGTGTTTTCCTCTCAAATGATTTGATAGATGAGGTTCTGAAGCGTGCTAGGTTCAGCCATGGAAACCCTTTACAGGCTCTCGAGTTTTTCGATTACACTGGGAATAGAAAAGGGTTTTATCACACCACATTTGCACTGGACACAATGCTTTATATGTTGGGAAGAAGTCGAATGTTCGAAAAGATGTGGGAGGTTTTGGTTGAGATCAAGAGTAAGGATAGGAATTTGATAACTCCGCGTACTGTGATGGTTGCATTAGCTAGGATTGCTAAGGTTTGTTCTGTTAGGGAGACAGTGGAGTGTTTTAGAAAGTTCAAGAAGCTTGTGCCCGAATTCGACACAGCTTGTTTCAATGCGTTGTTGAGGACTCTTTGTCAAGAGAAGAGTATGACAGATGCTAGGAATGTGTATCATAAGCTGAAGCAGAGCTTTAGGCCGAATTTGCAGACCTTTAATATATTGTTATCGGGTTGGAAGTCATCGGAGGAAGCTGAGGGGTTTTTCGAGGAGATGAGGGAGATGGGTCTGAAACCTGATATTGTTTCGTACAATTGTTTGATCGATGTTTATAGTAAGAATAGAGAAATGGAGAAAGCGTTTAAGGTGATGGAAAAAATGCATGACGAGGATATTTCACCAGATAAAATCACGTATACTTGTGTCATTGGGGGACTGGGGTTGGTTGGTCAGCCTGATAAAGCCAGAGATGTGTTGAAGGAAATGAAGGAGCTTGGGTGCTACCCAGATGTTGCGGCATACAATGCTGCCATTAGGAATTTTTGCATTGCAAAGAGGCTTGGTGATGCTAATGGGTTGATGGAGGAGATGATAAGTAATGGTTTGAGTCCAAATGCAACTACTTACAATTTGTTCTTTAGGGTTTTCTTCTGGTCAAGTGACTTGCAGAACTCTTGGAGCTTGTATGGGAGAATGATGCATACTGGGTGTCTGCCTAATACACAGTCGTGCATGTTCCTGATCAGGTTGTTTCGGAGGCTGGAAAAGGTGGATATGGCATTGCAGCTGTGGAATGATATGGTCGAGAGGGGTTTTGGGTCTTATATATTGGTATCTGATGTGCTGTTTGATTTGCTGTGTGATATGGGTAAACTAACAGAAGCAGAAACGTGCTTCTTGCAGATGATGGAGAAGGGGCATAAGCCAAGTAATGTTTCCTTTAGAAGGATCAAGGTGCTTATGGAACTGGCAAACAAGCATGAGGCCCTCAAGAACTTGACGGAGAAAATGACACTTTTTGGCTCTTCAATCCATCTTCCTGAGAGTATGGATAGGTCAACAGAGGTACTGCGATCAGAATCACTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

506

Amino Acids

58.21

Weight (kDa)

8.67

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	177 - 221	6.2e-07	PPR repeat family
PPR_3	PF13812	232 - 288	6.5e-11	Pentatricopeptide repeat domain
PPR_long	PF17177	232 - 358	9.2e-10	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	235 - 335	2.7e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	238 - 270	6.1e-09	PPR repeat
PPR_2	PF13041	242 - 289	1.9e-16	PPR repeat family
PPR	PF01535	245 - 274	1.5e-07	PPR repeat
PPR_3	PF13812	265 - 322	1e-08	Pentatricopeptide repeat domain
PPR	PF01535	280 - 310	1e-06	PPR repeat
PPR_2	PF13041	283 - 325	2.3e-07	PPR repeat family
PPR_3	PF13812	301 - 358	7.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	312 - 359	3.8e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02420
fragaria_vesca	FvH4_5g32610 FvH4_5g32610 FvH4_5g32610
malus_domestica	MD08G1216300.v1.1
prunus_persica	Prupe.1G549200_v2.0.a1
pyrus_communis	pycom08g18730
rosa_chinensis	RchiOBHm_Chr7g0230241
rosa_laevigata	RLG00000001507
rosa_multiflora	Rmu_sc0002822.1_g000019 Rmu_sc0008506.1_g000024
rosa_roxburghii	Rroxscaffold_3G00230280
rosa_rugosa	Rorug07G0260000
rosa_samantha	Rh7AG409400 Rh7BG389300 Rh7CG428000 Rh7DG407000
rosa_wichuraiana	Rw0G018590 Rw0G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AatII	GACGTC	1 cut(s)	123
AccI	GTMKAC	3 cut(s)	123, 132, 845
AccII	CGCG	1 cut(s)	430
AciI	CCGC	4 cut(s)	59, 136, 428, 944
AclWI	GGATC	1 cut(s)	1385
AcsI	RAATTY	4 cut(s)	415, 524, 631, 967
AcuI	CTGAAG	2 cut(s)	251, 632
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	4 cut(s)	53, 433, 740, 1497
AfiI	CCNNNNNNNGG	2 cut(s)	265, 1374
AgsI	TTSAA	6 cut(s)	172, 184, 508, 544, 907, 1458
AhdI	GACNNNNNGTC	1 cut(s)	564
AjuI	GAANNNNNNNTTGG	2 cut(s)	1348, 1380
AleI	CACNNNNGTG	1 cut(s)	1156
Alw26I	GTCTC	2 cut(s)	31, 476
AlwI	GGATC	1 cut(s)	1385
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	626, 1413
ApeKI	GCWGC	2 cut(s)	956, 1213
ApoI	RAATTY	4 cut(s)	415, 524, 631, 967
AspS9I	GGNCC	1 cut(s)	1414
AsuHPI	GGTGA	4 cut(s)	30, 808, 819, 1004
AsuII	TTCGAA	1 cut(s)	369
AvaI	CYCGRG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	684
BbvI	GCAGC	2 cut(s)	943, 1225
BccI	CCATC	7 cut(s)	43, 433, 706, 793, 1003, 1330, 1470
BclI	TGATCA	1 cut(s)	1170
BcoDI	GTCTC	2 cut(s)	31, 476
BfaI	CTAG	3 cut(s)	240, 453, 591
BisI	GCNGC	4 cut(s)	59, 945, 957, 1214
BlsI	GCNGC	4 cut(s)	60, 946, 958, 1215
BmeRI	GACNNNNNGTC	1 cut(s)	564
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	1414
BmrI	ACTGGG	3 cut(s)	300, 875, 1143
BmsI	GCATC	3 cut(s)	577, 985, 1116
BmuI	ACTGGG	3 cut(s)	300, 875, 1143
Bpu10I	CCTNAGC	2 cut(s)	462, 684
Bpu14I	TTCGAA	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	1403
Bsa29I	ATCGAT	1 cut(s)	753
BsaAI	YACGTR	1 cut(s)	843
BsaBI	GATNNNNATC	1 cut(s)	1507
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	4 cut(s)	773, 803, 911, 941
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 1374
Bse1I	ACTGG	5 cut(s)	295, 333, 870, 1138, 1401
Bse3DI	GCAATG	2 cut(s)	975, 1208
Bse8I	GATNNNNATC	1 cut(s)	1507
BseCI	ATCGAT	1 cut(s)	753
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	29
BseJI	GATNNNNATC	1 cut(s)	1507
BseLI	CCNNNNNNNGG	2 cut(s)	265, 1374
BseMI	GCAATG	2 cut(s)	975, 1208
BseMII	CTCAG	2 cut(s)	675, 1461
BseNI	ACTGG	5 cut(s)	295, 333, 870, 1138, 1401
BseRI	GAGGAG	2 cut(s)	713, 1028
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	943, 1225
Bsh1236I	CGCG	1 cut(s)	430
BshFI	GGCC	2 cut(s)	628, 1415
BshVI	ATCGAT	1 cut(s)	753
BsiHKCI	CYCGRG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	876
BslI	CCNNNNNNNGG	2 cut(s)	265, 1374
BsmAI	GTCTC	2 cut(s)	31, 476
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	876
BsnI	GGCC	2 cut(s)	628, 1415
BsoBI	CYCGRG	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	5 cut(s)	396, 750, 1170, 1377, 1502
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	4 cut(s)	59, 136, 428, 944
BspANI	GGCC	2 cut(s)	628, 1415
BspCNI	CTCAG	2 cut(s)	676, 1462
BspDI	ATCGAT	1 cut(s)	753
BspFNI	CGCG	1 cut(s)	430
BspPI	GGATC	1 cut(s)	1385
BspQI	GCTCTTC	1 cut(s)	1459
BspT104I	TTCGAA	1 cut(s)	369
BsrDI	GCAATG	2 cut(s)	975, 1208
BsrI	ACTGG	5 cut(s)	295, 333, 870, 1138, 1401
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	5 cut(s)	396, 750, 1170, 1377, 1502
BssNAI	GTATAC	1 cut(s)	846
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	250
Bst1107I	GTATAC	1 cut(s)	846
Bst4CI	ACNGT	5 cut(s)	116, 130, 436, 487, 1155
Bst6I	CTCTTC	3 cut(s)	100, 569, 1459
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	953
BstBAI	YACGTR	1 cut(s)	843
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	462, 684, 1470
BstDSI	CCRYGG	1 cut(s)	250
BstENI	CCTNNNNNAGG	1 cut(s)	1372
BstF5I	GGATG	1 cut(s)	29
BstFNI	CGCG	1 cut(s)	430
BstKTI	GATC	5 cut(s)	399, 753, 1173, 1380, 1505
BstMAI	GTCTC	2 cut(s)	31, 476
BstMBI	GATC	5 cut(s)	396, 750, 1170, 1377, 1502
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 458, 634, 953
BstNSI	RCATGY	1 cut(s)	1165
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	1 cut(s)	430
BstV1I	GCAGC	2 cut(s)	943, 1225
BstZ17I	GTATAC	1 cut(s)	846
Bsu15I	ATCGAT	1 cut(s)	753
BsuRI	GGCC	2 cut(s)	628, 1415
BsuTUI	ATCGAT	1 cut(s)	753
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	5 cut(s)	121, 126, 288, 326, 492
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	1414
ClaI	ATCGAT	1 cut(s)	753
Csp6I	GTAC	4 cut(s)	52, 432, 739, 1496
CviAII	CATG	4 cut(s)	251, 812, 1162, 1409
CviQI	GTAC	4 cut(s)	52, 432, 739, 1496
DdeI	CTNAG	3 cut(s)	462, 684, 1470
DpnI	GATC	5 cut(s)	398, 752, 1172, 1379, 1504
DpnII	GATC	5 cut(s)	396, 750, 1170, 1377, 1502
DrdI	GACNNNNNNGTC	1 cut(s)	119
DriI	GACNNNNNGTC	1 cut(s)	564
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	3 cut(s)	100, 569, 1459
Eam1105I	GACNNNNNGTC	1 cut(s)	564
EarI	CTCTTC	3 cut(s)	100, 569, 1459
Eco130I	CCWWGG	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	251, 632
Eco88I	CYCGRG	1 cut(s)	272
EcoNI	CCTNNNNNAGG	1 cut(s)	1372
EcoO109I	RGGNCCY	1 cut(s)	1414
EcoRI	GAATTC	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	250
EcoT22I	ATGCAT	2 cut(s)	813, 1131
ErhI	CCWWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	4 cut(s)	254, 815, 1165, 1412
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 605, 637
FaqI	GGGAC	1 cut(s)	876
FatI	CATG	4 cut(s)	250, 811, 1161, 1408
FbaI	TGATCA	1 cut(s)	1170
FblI	GTMKAC	3 cut(s)	123, 132, 845
Fnu4HI	GCNGC	4 cut(s)	59, 945, 957, 1214
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	4 cut(s)	59, 945, 957, 1214
FspBI	CTAG	3 cut(s)	240, 453, 591
GluI	GCNGC	4 cut(s)	59, 945, 957, 1214
HaeIII	GGCC	2 cut(s)	628, 1415
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	254, 815, 1165, 1412
HincII	GTYRAC	2 cut(s)	124, 1488
HindII	GTYRAC	2 cut(s)	124, 1488
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	4 cut(s)	87, 559, 1036, 1508
HphI	GGTGA	4 cut(s)	30, 808, 819, 1004
Hpy166II	GTNNAC	5 cut(s)	124, 133, 846, 1301, 1488
Hpy188I	TCNGA	6 cut(s)	231, 676, 720, 1185, 1267, 1507
Hpy188III	TCNNGA	8 cut(s)	272, 400, 508, 569, 1168, 1234, 1420, 1469
Hpy8I	GTNNAC	5 cut(s)	124, 133, 846, 1301, 1488
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	901, 910, 1336, 1368
HpyCH4III	ACNGT	5 cut(s)	116, 130, 436, 487, 1155
HpyCH4IV	ACGT	3 cut(s)	120, 842, 1319
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 458, 634, 953
HpyF3I	CTNAG	3 cut(s)	462, 684, 1470
HpySE526I	ACGT	3 cut(s)	120, 842, 1319
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	254, 815, 1165, 1412
Ksp22I	TGATCA	1 cut(s)	1170
Kzo9I	GATC	5 cut(s)	396, 750, 1170, 1377, 1502
LguI	GCTCTTC	1 cut(s)	1459
LmnI	GCTCC	3 cut(s)	155, 919, 1107
Lsp1109I	GCAGC	2 cut(s)	943, 1225
LweI	GCATC	3 cut(s)	577, 985, 1116
MaeI	CTAG	3 cut(s)	240, 453, 591
MaeII	ACGT	3 cut(s)	120, 842, 1319
MaeIII	GTNAC	2 cut(s)	116, 1088
MalI	GATC	5 cut(s)	398, 752, 1172, 1379, 1504
MboI	GATC	5 cut(s)	396, 750, 1170, 1377, 1502
MboII	GAAGA	6 cut(s)	87, 366, 586, 1069, 1446, 1457
MfeI	CAATTG	1 cut(s)	742
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	7 cut(s)	69, 415, 524, 631, 742, 967, 1057
MlyI	GAGTC	2 cut(s)	553, 1045
MmeI	TCCRAC	1 cut(s)	644
Mph1103I	ATGCAT	2 cut(s)	813, 1131
MseI	TTAA	2 cut(s)	645, 792
MslI	CAYNNNNRTG	1 cut(s)	1156
MspA1I	CMGCKG	1 cut(s)	1216
MunI	CAATTG	1 cut(s)	742
MvnI	CGCG	1 cut(s)	430
MwoI	GCNNNNNNNGC	4 cut(s)	14, 458, 634, 953
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	5 cut(s)	396, 750, 1170, 1377, 1502
NlaIII	CATG	4 cut(s)	254, 815, 1165, 1412
NmuCI	GTSAC	2 cut(s)	116, 1088
NsiI	ATGCAT	2 cut(s)	813, 1131
NspI	RCATGY	1 cut(s)	1165
NspV	TTCGAA	1 cut(s)	369
OliI	CACNNNNGTG	1 cut(s)	1156
PaeR7I	CTCGAG	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	1459
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 279
PfeI	GAWTC	2 cut(s)	87, 1508
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	4 cut(s)	60, 946, 958, 1215
PleI	GAGTC	2 cut(s)	553, 1044
PpsI	GAGTC	2 cut(s)	553, 1044
Ppu21I	YACGTR	1 cut(s)	843
PspPI	GGNCC	1 cut(s)	1414
PsyI	GACNNNGTC	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	1216
RsaI	GTAC	4 cut(s)	53, 433, 740, 1497
RsaNI	GTAC	4 cut(s)	52, 432, 739, 1496
RseI	CAYNNNNRTG	1 cut(s)	1156
SalI	GTCGAC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	1459
SaqAI	TTAA	2 cut(s)	645, 792
SatI	GCNGC	4 cut(s)	59, 945, 957, 1214
Sau3AI	GATC	5 cut(s)	396, 750, 1170, 1377, 1502
Sau96I	GGNCC	1 cut(s)	1414
SchI	GAGTC	2 cut(s)	553, 1045
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	3 cut(s)	577, 985, 1116
Sfr274I	CTCGAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	369
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	1156
SmlI	CTYRAG	2 cut(s)	272, 1418
SmoI	CTYRAG	2 cut(s)	272, 1418
Sse9I	AATT	7 cut(s)	69, 415, 524, 631, 742, 967, 1057
SsiI	CCGC	4 cut(s)	59, 136, 428, 944
SspMI	CTAG	3 cut(s)	240, 453, 591
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	5 cut(s)	116, 130, 436, 487, 1155
TaiI	ACGT	3 cut(s)	123, 845, 1322
TasI	AATT	7 cut(s)	69, 415, 524, 631, 742, 967, 1057
TauI	GCSGC	2 cut(s)	61, 947
TfiI	GAWTC	2 cut(s)	87, 1508
Tru1I	TTAA	2 cut(s)	645, 792
Tru9I	TTAA	2 cut(s)	645, 792
TscAI	CASTG	5 cut(s)	121, 133, 295, 333, 492
TseFI	GTSAC	2 cut(s)	116, 1088
TseI	GCWGC	2 cut(s)	956, 1213
Tsp45I	GTSAC	2 cut(s)	116, 1088
TspDTI	ATGAA	1 cut(s)	929
TspGWI	ACGGA	1 cut(s)	1445
TspRI	CASTG	5 cut(s)	121, 133, 295, 333, 492
Tth111I	GACNNNGTC	1 cut(s)	128
XagI	CCTNNNNNAGG	1 cut(s)	1372
XapI	RAATTY	4 cut(s)	415, 524, 631, 967
XceI	RCATGY	1 cut(s)	1165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	272
XmiI	GTMKAC	3 cut(s)	123, 132, 845
XspI	CTAG	3 cut(s)	240, 453, 591
ZraI	GACGTC	1 cut(s)	121
Zsp2I	ATGCAT	2 cut(s)	813, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.