Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02420 |
| fragaria_vesca | FvH4_5g32610 FvH4_5g32610 FvH4_5g32610 |
| malus_domestica | MD08G1216300.v1.1 |
| prunus_persica | Prupe.1G549200_v2.0.a1 |
| pyrus_communis | pycom08g18730 |
| rosa_chinensis | RchiOBHm_Chr7g0230241 |
| rosa_laevigata | RLG00000001507 |
| rosa_multiflora | Rmu_sc0002822.1_g000019 Rmu_sc0008506.1_g000024 |
| rosa_roxburghii | Rroxscaffold_3G00230280 |
| rosa_rugosa | Rorug07G0260000 |
| rosa_samantha | Rh7AG409400 Rh7BG389300 Rh7CG428000 Rh7DG407000 |
| rosa_wichuraiana | Rw0G018590 Rw0G022620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 1385 |
| AcsI | RAATTY | 3 cut(s) | 415, 524, 967 |
| AcuI | CTGAAG | 2 cut(s) | 632, 1439 |
| AfaI | GTAC | 3 cut(s) | 53, 1055, 1477 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1374 |
| AgsI | TTSAA | 7 cut(s) | 172, 184, 283, 508, 544, 646, 1458 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 564 |
| AhlI | ACTAGT | 1 cut(s) | 848 |
| AjnI | CCWGG | 1 cut(s) | 1468 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1348, 1380 |
| AluBI | AGCT | 9 cut(s) | 71, 105, 269, 452, 514, 683, 1101, 1216, 1485 |
| AluI | AGCT | 9 cut(s) | 71, 105, 269, 452, 514, 683, 1101, 1216, 1485 |
| Alw21I | GWGCWC | 1 cut(s) | 1487 |
| Alw26I | GTCTC | 2 cut(s) | 119, 1487 |
| AlwI | GGATC | 1 cut(s) | 1385 |
| AoxI | GGCC | 1 cut(s) | 1413 |
| ApeKI | GCWGC | 3 cut(s) | 944, 956, 1213 |
| ApoI | RAATTY | 3 cut(s) | 415, 524, 967 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1139, 1171 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1241, 1512 |
| AspS9I | GGNCC | 1 cut(s) | 1414 |
| AsuC2I | CCSGG | 1 cut(s) | 661 |
| AsuHPI | GGTGA | 4 cut(s) | 30, 819, 832, 1004 |
| BanII | GRGCYC | 1 cut(s) | 1487 |
| Bbv12I | GWGCWC | 1 cut(s) | 1487 |
| BbvCI | CCTCAGC | 1 cut(s) | 684 |
| BbvI | GCAGC | 3 cut(s) | 943, 956, 1225 |
| BccI | CCATC | 2 cut(s) | 706, 1330 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1075, 1109 |
| BciT130I | CCWGG | 1 cut(s) | 1470 |
| BciVI | GTATCC | 1 cut(s) | 325 |
| BcnI | CCSGG | 1 cut(s) | 661 |
| BcoDI | GTCTC | 2 cut(s) | 119, 1487 |
| BcuI | ACTAGT | 1 cut(s) | 848 |
| BfaI | CTAG | 4 cut(s) | 162, 453, 591, 849 |
| BfuI | GTATCC | 1 cut(s) | 325 |
| BisI | GCNGC | 3 cut(s) | 945, 957, 1214 |
| BlpI | GCTNAGC | 1 cut(s) | 1486 |
| BlsI | GCNGC | 3 cut(s) | 946, 958, 1215 |
| Bme1390I | CCNGG | 2 cut(s) | 661, 1470 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 564 |
| BmgT120I | GGNCC | 1 cut(s) | 1414 |
| BmiI | GGNNCC | 1 cut(s) | 723 |
| BmrFI | CCNGG | 2 cut(s) | 661, 1470 |
| BmrI | ACTGGG | 1 cut(s) | 300 |
| BmsI | GCATC | 6 cut(s) | 577, 985, 1003, 1116, 1127, 1310 |
| BmuI | ACTGGG | 1 cut(s) | 300 |
| Bpu10I | CCTNAGC | 2 cut(s) | 462, 684 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1486 |
| BpuMI | CCSGG | 1 cut(s) | 661 |
| BsaAI | YACGTR | 1 cut(s) | 1053 |
| BsaJI | CCNNGG | 3 cut(s) | 250, 428, 1469 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 911, 941 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1374 |
| Bse1I | ACTGG | 4 cut(s) | 157, 295, 1138, 1401 |
| Bse3DI | GCAATG | 2 cut(s) | 1023, 1208 |
| BseBI | CCWGG | 1 cut(s) | 1470 |
| BseDI | CCNNGG | 3 cut(s) | 250, 428, 1469 |
| BseGI | GGATG | 3 cut(s) | 29, 1018, 1142 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1374 |
| BseMI | GCAATG | 2 cut(s) | 1023, 1208 |
| BseMII | CTCAG | 3 cut(s) | 666, 675, 1500 |
| BseNI | ACTGG | 4 cut(s) | 157, 295, 1138, 1401 |
| BseXI | GCAGC | 3 cut(s) | 943, 956, 1225 |
| BseYI | CCCAGC | 1 cut(s) | 67 |
| BshFI | GGCC | 1 cut(s) | 1415 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1487 |
| BsiSI | CCGG | 1 cut(s) | 660 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1374 |
| BsmAI | GTCTC | 2 cut(s) | 119, 1487 |
| BsnI | GGCC | 1 cut(s) | 1415 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1487 |
| Bsp143I | GATC | 1 cut(s) | 1377 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1486 |
| Bsp19I | CCATGG | 1 cut(s) | 250 |
| BspANI | GGCC | 1 cut(s) | 1415 |
| BspCNI | CTCAG | 3 cut(s) | 667, 676, 1499 |
| BspLI | GGNNCC | 1 cut(s) | 723 |
| BspPI | GGATC | 1 cut(s) | 1385 |
| BspQI | GCTCTTC | 1 cut(s) | 1459 |
| BsrDI | GCAATG | 2 cut(s) | 1023, 1208 |
| BsrI | ACTGG | 4 cut(s) | 157, 295, 1138, 1401 |
| BssECI | CCNNGG | 3 cut(s) | 250, 428, 1469 |
| BssMI | GATC | 1 cut(s) | 1377 |
| BssT1I | CCWWGG | 1 cut(s) | 250 |
| Bst2UI | CCWGG | 1 cut(s) | 1470 |
| Bst4CI | ACNGT | 5 cut(s) | 16, 317, 436, 487, 1155 |
| Bst6I | CTCTTC | 4 cut(s) | 295, 569, 977, 1459 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 953 |
| BstBAI | YACGTR | 1 cut(s) | 1053 |
| BstC8I | GCNNGC | 2 cut(s) | 177, 1142 |
| BstDEI | CTNAG | 5 cut(s) | 388, 462, 675, 684, 1486 |
| BstDSI | CCRYGG | 2 cut(s) | 250, 428 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1372 |
| BstF5I | GGATG | 3 cut(s) | 29, 1018, 1142 |
| BstKTI | GATC | 1 cut(s) | 1380 |
| BstMAI | GTCTC | 2 cut(s) | 119, 1487 |
| BstMBI | GATC | 1 cut(s) | 1377 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 102, 458, 634, 953 |
| BstNI | CCWGG | 1 cut(s) | 1470 |
| BstSCI | CCNGG | 2 cut(s) | 659, 1468 |
| BstSNI | TACGTA | 1 cut(s) | 1053 |
| BstV1I | GCAGC | 3 cut(s) | 943, 956, 1225 |
| BsuI | GTATCC | 1 cut(s) | 325 |
| BsuRI | GGCC | 1 cut(s) | 1415 |
| BtgI | CCRYGG | 2 cut(s) | 250, 428 |
| BtsCI | GGATG | 3 cut(s) | 29, 1018, 1142 |
| BtsIMutI | CAGTG | 1 cut(s) | 21 |
| Cac8I | GCNNGC | 2 cut(s) | 177, 1142 |
| Cfr13I | GGNCC | 1 cut(s) | 1414 |
| Csp6I | GTAC | 3 cut(s) | 52, 1054, 1476 |
| CviAII | CATG | 3 cut(s) | 251, 1104, 1409 |
| CviQI | GTAC | 3 cut(s) | 52, 1054, 1476 |
| DdeI | CTNAG | 5 cut(s) | 388, 462, 675, 684, 1486 |
| DpnI | GATC | 1 cut(s) | 1379 |
| DpnII | GATC | 1 cut(s) | 1377 |
| DriI | GACNNNNNGTC | 1 cut(s) | 564 |
| Eam1104I | CTCTTC | 4 cut(s) | 295, 569, 977, 1459 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 564 |
| EarI | CTCTTC | 4 cut(s) | 295, 569, 977, 1459 |
| Ecl136II | GAGCTC | 1 cut(s) | 1485 |
| Eco105I | TACGTA | 1 cut(s) | 1053 |
| Eco130I | CCWWGG | 1 cut(s) | 250 |
| Eco24I | GRGCYC | 1 cut(s) | 1487 |
| Eco32I | GATATC | 1 cut(s) | 730 |
| Eco53kI | GAGCTC | 1 cut(s) | 1485 |
| Eco57I | CTGAAG | 2 cut(s) | 632, 1439 |
| EcoICRI | GAGCTC | 1 cut(s) | 1485 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1372 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1414 |
| EcoRI | GAATTC | 1 cut(s) | 524 |
| EcoRII | CCWGG | 1 cut(s) | 1468 |
| EcoRV | GATATC | 1 cut(s) | 730 |
| EcoT14I | CCWWGG | 1 cut(s) | 250 |
| EcoT22I | ATGCAT | 1 cut(s) | 1131 |
| EcoT38I | GRGCYC | 1 cut(s) | 1487 |
| ErhI | CCWWGG | 1 cut(s) | 250 |
| FaeI | CATG | 3 cut(s) | 254, 1107, 1412 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 605, 637 |
| FatI | CATG | 3 cut(s) | 250, 1103, 1408 |
| Fnu4HI | GCNGC | 3 cut(s) | 945, 957, 1214 |
| FokI | GGATG | 3 cut(s) | 16, 1025, 1149 |
| FriOI | GRGCYC | 1 cut(s) | 1487 |
| Fsp4HI | GCNGC | 3 cut(s) | 945, 957, 1214 |
| FspBI | CTAG | 4 cut(s) | 162, 453, 591, 849 |
| GluI | GCNGC | 3 cut(s) | 945, 957, 1214 |
| GsaI | CCCAGC | 1 cut(s) | 71 |
| HaeIII | GGCC | 1 cut(s) | 1415 |
| HapII | CCGG | 1 cut(s) | 660 |
| Hin1II | CATG | 3 cut(s) | 254, 1107, 1412 |
| HincII | GTYRAC | 1 cut(s) | 394 |
| HindII | GTYRAC | 1 cut(s) | 394 |
| HindIII | AAGCTT | 2 cut(s) | 267, 512 |
| HinfI | GANTC | 4 cut(s) | 491, 559, 1036, 1508 |
| HpaII | CCGG | 1 cut(s) | 660 |
| HphI | GGTGA | 4 cut(s) | 30, 819, 832, 1004 |
| Hpy166II | GTNNAC | 2 cut(s) | 394, 840 |
| Hpy188I | TCNGA | 3 cut(s) | 612, 676, 1267 |
| Hpy188III | TCNNGA | 5 cut(s) | 99, 162, 508, 569, 1168 |
| Hpy8I | GTNNAC | 2 cut(s) | 394, 840 |
| HpyAV | CCTTC | 3 cut(s) | 910, 1231, 1368 |
| HpyCH4III | ACNGT | 5 cut(s) | 16, 317, 436, 487, 1155 |
| HpyCH4IV | ACGT | 4 cut(s) | 54, 120, 1052, 1501 |
| HpyCH4V | TGCA | 8 cut(s) | 637, 944, 1016, 1046, 1096, 1129, 1213, 1330 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 102, 458, 634, 953 |
| HpyF3I | CTNAG | 5 cut(s) | 388, 462, 675, 684, 1486 |
| HpySE526I | ACGT | 4 cut(s) | 54, 120, 1052, 1501 |
| Hsp92II | CATG | 3 cut(s) | 254, 1107, 1412 |
| Kzo9I | GATC | 1 cut(s) | 1377 |
| LguI | GCTCTTC | 1 cut(s) | 1459 |
| LmnI | GCTCC | 2 cut(s) | 110, 721 |
| Lsp1109I | GCAGC | 3 cut(s) | 943, 956, 1225 |
| LweI | GCATC | 6 cut(s) | 577, 985, 1003, 1116, 1127, 1310 |
| MaeI | CTAG | 4 cut(s) | 162, 453, 591, 849 |
| MaeII | ACGT | 4 cut(s) | 54, 120, 1052, 1501 |
| MaeIII | GTNAC | 2 cut(s) | 812, 1289 |
| MalI | GATC | 1 cut(s) | 1379 |
| MboI | GATC | 1 cut(s) | 1377 |
| MboII | GAAGA | 7 cut(s) | 312, 366, 586, 994, 1069, 1432, 1446 |
| MfeI | CAATTG | 1 cut(s) | 742 |
| MhlI | GDGCHC | 1 cut(s) | 1487 |
| MluCI | AATT | 8 cut(s) | 283, 415, 524, 544, 631, 742, 967, 1057 |
| MlyI | GAGTC | 3 cut(s) | 500, 553, 1045 |
| Mph1103I | ATGCAT | 1 cut(s) | 1131 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1241, 1512 |
| MseI | TTAA | 7 cut(s) | 89, 111, 399, 696, 905, 1007, 1182 |
| MspA1I | CMGCKG | 1 cut(s) | 1216 |
| MspI | CCGG | 1 cut(s) | 660 |
| MspR9I | CCNGG | 2 cut(s) | 661, 1470 |
| MunI | CAATTG | 1 cut(s) | 742 |
| MvaI | CCWGG | 1 cut(s) | 1470 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 102, 458, 634, 953 |
| NciI | CCSGG | 1 cut(s) | 661 |
| NcoI | CCATGG | 1 cut(s) | 250 |
| NdeII | GATC | 1 cut(s) | 1377 |
| NlaIII | CATG | 3 cut(s) | 254, 1107, 1412 |
| NlaIV | GGNNCC | 1 cut(s) | 723 |
| NmuCI | GTSAC | 2 cut(s) | 812, 1289 |
| NsiI | ATGCAT | 1 cut(s) | 1131 |
| PciSI | GCTCTTC | 1 cut(s) | 1459 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1241, 1512 |
| PfeI | GAWTC | 1 cut(s) | 1508 |
| PkrI | GCNGC | 3 cut(s) | 946, 958, 1215 |
| PleI | GAGTC | 3 cut(s) | 499, 553, 1044 |
| PpsI | GAGTC | 3 cut(s) | 499, 553, 1044 |
| Ppu21I | YACGTR | 1 cut(s) | 1053 |
| Psp124BI | GAGCTC | 1 cut(s) | 1487 |
| Psp6I | CCWGG | 1 cut(s) | 1468 |
| PspFI | CCCAGC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 1468 |
| PspN4I | GGNNCC | 1 cut(s) | 723 |
| PspPI | GGNCC | 1 cut(s) | 1414 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1046, 1078 |
| PvuII | CAGCTG | 1 cut(s) | 1216 |
| RsaI | GTAC | 3 cut(s) | 53, 1055, 1477 |
| RsaNI | GTAC | 3 cut(s) | 52, 1054, 1476 |
| SacI | GAGCTC | 1 cut(s) | 1487 |
| SapI | GCTCTTC | 1 cut(s) | 1459 |
| SaqAI | TTAA | 7 cut(s) | 89, 111, 399, 696, 905, 1007, 1182 |
| SatI | GCNGC | 3 cut(s) | 945, 957, 1214 |
| Sau3AI | GATC | 1 cut(s) | 1377 |
| Sau96I | GGNCC | 1 cut(s) | 1414 |
| SchI | GAGTC | 3 cut(s) | 500, 553, 1045 |
| ScrFI | CCNGG | 2 cut(s) | 661, 1470 |
| SduI | GDGCHC | 1 cut(s) | 1487 |
| SfaNI | GCATC | 6 cut(s) | 577, 985, 1003, 1116, 1127, 1310 |
| SnaBI | TACGTA | 1 cut(s) | 1053 |
| SpeI | ACTAGT | 1 cut(s) | 848 |
| Sse9I | AATT | 8 cut(s) | 283, 415, 524, 544, 631, 742, 967, 1057 |
| SspMI | CTAG | 4 cut(s) | 162, 453, 591, 849 |
| SstI | GAGCTC | 1 cut(s) | 1487 |
| StyD4I | CCNGG | 2 cut(s) | 659, 1468 |
| StyI | CCWWGG | 1 cut(s) | 250 |
| TaaI | ACNGT | 5 cut(s) | 16, 317, 436, 487, 1155 |
| TaiI | ACGT | 4 cut(s) | 57, 123, 1055, 1504 |
| TaqI | TCGA | 4 cut(s) | 152, 361, 528, 1085 |
| TasI | AATT | 8 cut(s) | 283, 415, 524, 544, 631, 742, 967, 1057 |
| TatI | WGTACW | 1 cut(s) | 1475 |
| TfiI | GAWTC | 1 cut(s) | 1508 |
| Tru1I | TTAA | 7 cut(s) | 89, 111, 399, 696, 905, 1007, 1182 |
| Tru9I | TTAA | 7 cut(s) | 89, 111, 399, 696, 905, 1007, 1182 |
| TscAI | CASTG | 1 cut(s) | 21 |
| TseFI | GTSAC | 2 cut(s) | 812, 1289 |
| TseI | GCWGC | 3 cut(s) | 944, 956, 1213 |
| Tsp45I | GTSAC | 2 cut(s) | 812, 1289 |
| TspDTI | ATGAA | 2 cut(s) | 726, 929 |
| TspGWI | ACGGA | 1 cut(s) | 445 |
| TspRI | CASTG | 1 cut(s) | 21 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1372 |
| XapI | RAATTY | 3 cut(s) | 415, 524, 967 |
| XbaI | TCTAGA | 1 cut(s) | 161 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1241, 1512 |
| XspI | CTAG | 4 cut(s) | 162, 453, 591, 849 |
| Zsp2I | ATGCAT | 1 cut(s) | 1131 |