Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00833

Orthogroup ID

OG0012017

Physical Location & Seq

Genomic Coordinates Reverse (-)

29027 .. 30544

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGGCACTCAAAGCTAAACCCATCTCATCCCCATCACCATTTTTCAGGTACTCTCCGCAAAACCCAATTTTCTTTCTCCCTCGATTACTCTCTTCCCAAACCCCAATCGACAGTGACGTCGACACTGTCTACCGCATAGTCAGTAGCTCCACCCGTTCCCAAAACTTGAAGCAAAACTTGAAATCGAGCGGTGTTTTCCTCTCGAATGATTTGATAGATGAGGTTCTGAAGCGGGCTAGGTTCAGCCATGGAAACCCTTTACAGGCTCTCGAGTTTTTCAATTACACTGGGAATAGGAGAGGATTTTATCACACCACATTTGCACTCGACACAATGCTTTATATGTTGGGAAGAAGTCGAATGTTCGAAAAGATGTGGGACGTTTTGGTTGAGATCAAGAATAAGGATAGGAATTTGATAACTCCTCGTACTGTGATGGTTGTTTTAGCTAGGATTGCTAAGGTTTGTTCTGTTAGGGAGACTGTGGAGTGTTTTAGAAAGTTCAAGAAGCTTGTGCCCGAATTCGACACAGCTTGTTTCAATGCGTTGTTGAGGACTCTTTGTCAAGAGAAGAGTATGACAGATGCTAGGAATGTGTATCATAAGCTGAAGCATAGCTTTAGGCCGAGTTTGCAGACCTTTAATATATTGTTATCGGGTTGGAAGTCAGCGGAGGAAGCTGAGGGGTTTTTCGAGGAGATGAGGGAGATGGGTCTGAAACCTGATATTGTTTCGTACAATTGTTTGATTGATGTTTATAGTAAGAATAGGGAAATGGAGAAAGCGTTTAAGGTGATGGAAACAATGCGTGACGAGGATATATCACCGGATAAGATCACGTATACTTGTGTCATTGGGGGACTGGGGTTGGTTGGTCAGCCTGATAAAGCCAGAGATGTGTTGAAGGAAATGAAGGAGCTTGGGTGCTACCCAGATGTTGCGGCATACAATGCTGCCATTAGGAATTTTTGCATTGCAAAGAGGCTTGGTGATGCTAATGGGTTGATGGAGGAGATGAGAAGTAATGGTTTGAGTCCAAATGCAACTACTTACAATTTGTTCTTTAGGGTTTTCTTCTGGTCAAGTGACTTGCAGAACTCTTGGAGCTTGTATGGGAGAATGATGCATACTGGGTGTCTGCCAAATACACAGTCGTGCATGTTCCTGATCAGGTTGTTTAAGAGGCTGGAAAAGGTGGACATGGCATTTCAGCTGTGGAATGATATGGTTGAGAGGGGTTTTGGGTCTTATATATTGGTATCTGATGTGCTGTTTGATTTGCTGTGTGATATGGGTAAACTAACAGAAGCAGAAACGTGCTTCTTGCAGATGGTGGAGAAGACGCATAAGCCAAGTAATGTTTCCTTTAGAAGGATCAAGGTGCTTATGGAACTGGCAAACAAGCATGAGGCCCTCAAGAACTTGACAGAGAAAATGGCACTTTTTGGCTCTTCAATCCATCTTCCTGACAGTATGGATAGGTCAACAGAGGTACTGCGCTCAGAATCACTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

505

Amino Acids

58.12

Weight (kDa)

8.84

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	176 - 220	4.4e-06	PPR repeat family
PPR_3	PF13812	231 - 287	5.5e-11	Pentatricopeptide repeat domain
PPR_long	PF17177	231 - 357	3.7e-10	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	234 - 320	5.4e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	237 - 270	1.3e-08	PPR repeat
PPR_2	PF13041	241 - 288	1.8e-16	PPR repeat family
PPR	PF01535	244 - 273	5.6e-07	PPR repeat
PPR_3	PF13812	272 - 320	2.1e-06	Pentatricopeptide repeat domain
PPR	PF01535	279 - 309	1e-06	PPR repeat
PPR_2	PF13041	282 - 324	2.3e-07	PPR repeat family
PPR_3	PF13812	300 - 357	4.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	311 - 358	1.1e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02420
fragaria_vesca	FvH4_5g32610 FvH4_5g32610 FvH4_5g32610
malus_domestica	MD08G1216300.v1.1
prunus_persica	Prupe.1G549200_v2.0.a1
pyrus_communis	pycom08g18730
rosa_chinensis	RchiOBHm_Chr7g0230241
rosa_laevigata	RLG00000001507
rosa_multiflora	Rmu_sc0002822.1_g000019 Rmu_sc0008506.1_g000024
rosa_roxburghii	Rroxscaffold_3G00230280
rosa_rugosa	Rorug07G0260000
rosa_samantha	Rh7AG409400 Rh7BG389300 Rh7CG428000 Rh7DG407000
rosa_wichuraiana	Rw0G018590 Rw0G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AatII	GACGTC	1 cut(s)	120
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	3 cut(s)	120, 129, 842
AciI	CCGC	6 cut(s)	56, 133, 189, 232, 671, 941
AclWI	GGATC	1 cut(s)	1382
AcsI	RAATTY	3 cut(s)	412, 521, 964
AcuI	CTGAAG	2 cut(s)	248, 629
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	4 cut(s)	50, 430, 737, 1494
AfiI	CCNNNNNNNGG	2 cut(s)	262, 1371
AgsI	TTSAA	7 cut(s)	169, 181, 280, 505, 541, 904, 1455
AhdI	GACNNNNNGTC	1 cut(s)	561
AjuI	GAANNNNNNNTTGG	2 cut(s)	1345, 1377
AleI	CACNNNNGTG	1 cut(s)	1153
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	1382
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	623, 1410
ApeKI	GCWGC	1 cut(s)	953
ApoI	RAATTY	3 cut(s)	412, 521, 964
ArsI	GACNNNNNNTTYG	2 cut(s)	1136, 1168
AspLEI	GCGC	1 cut(s)	1500
AspS9I	GGNCC	1 cut(s)	1411
AsuHPI	GGTGA	4 cut(s)	27, 805, 816, 1001
AsuII	TTCGAA	1 cut(s)	366
AvaI	CYCGRG	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	1346
BbvCI	CCTCAGC	1 cut(s)	681
BbvI	GCAGC	1 cut(s)	940
BccI	CCATC	8 cut(s)	29, 40, 430, 703, 790, 1000, 1324, 1467
BclI	TGATCA	1 cut(s)	1167
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	3 cut(s)	237, 450, 588
BisI	GCNGC	2 cut(s)	942, 954
BlsI	GCNGC	2 cut(s)	943, 955
BmeRI	GACNNNNNGTC	1 cut(s)	561
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	1411
BmrI	ACTGGG	3 cut(s)	297, 872, 1140
BmsI	GCATC	3 cut(s)	574, 982, 1113
BmuI	ACTGGG	3 cut(s)	297, 872, 1140
BpiI	GAAGAC	1 cut(s)	1346
Bpu10I	CCTNAGC	2 cut(s)	459, 681
Bpu14I	TTCGAA	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	1400
BsaAI	YACGTR	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	4 cut(s)	770, 800, 908, 938
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 1371
Bse1I	ACTGG	4 cut(s)	292, 867, 1135, 1398
Bse3DI	GCAATG	1 cut(s)	972
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	262, 1371
BseMI	GCAATG	1 cut(s)	972
BseMII	CTCAG	2 cut(s)	672, 1515
BseNI	ACTGG	4 cut(s)	292, 867, 1135, 1398
BseRI	GAGGAG	3 cut(s)	414, 710, 1025
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	1 cut(s)	940
BshFI	GGCC	2 cut(s)	625, 1412
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	827
BslFI	GGGAC	2 cut(s)	392, 873
BslI	CCNNNNNNNGG	2 cut(s)	262, 1371
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	2 cut(s)	392, 873
BsnI	GGCC	2 cut(s)	625, 1412
BsoBI	CYCGRG	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	4 cut(s)	393, 834, 1167, 1374
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	6 cut(s)	56, 133, 189, 232, 671, 941
BspANI	GGCC	2 cut(s)	625, 1412
BspCNI	CTCAG	2 cut(s)	673, 1514
BspPI	GGATC	1 cut(s)	1382
BspQI	GCTCTTC	1 cut(s)	1456
BspT104I	TTCGAA	1 cut(s)	366
BsrBI	CCGCTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	972
BsrI	ACTGG	4 cut(s)	292, 867, 1135, 1398
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	4 cut(s)	393, 834, 1167, 1374
BssNAI	GTATAC	1 cut(s)	843
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	247
Bst1107I	GTATAC	1 cut(s)	843
Bst4CI	ACNGT	6 cut(s)	113, 127, 433, 484, 1152, 1472
Bst6I	CTCTTC	3 cut(s)	97, 566, 1456
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	950
BstBAI	YACGTR	1 cut(s)	840
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	459, 681, 1501
BstDSI	CCRYGG	1 cut(s)	247
BstENI	CCTNNNNNAGG	1 cut(s)	1369
BstF5I	GGATG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	1500
BstKTI	GATC	4 cut(s)	396, 837, 1170, 1377
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	4 cut(s)	393, 834, 1167, 1374
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 455, 631, 677, 950
BstNSI	RCATGY	1 cut(s)	1162
BstSLI	GKGCMC	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	940
BstV2I	GAAGAC	1 cut(s)	1346
BstZ17I	GTATAC	1 cut(s)	843
BsuRI	GGCC	2 cut(s)	625, 1412
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	26
BtsIMutI	CAGTG	3 cut(s)	118, 123, 285
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	1500
Cfr13I	GGNCC	1 cut(s)	1411
CseI	GACGC	1 cut(s)	1351
Csp6I	GTAC	4 cut(s)	49, 429, 736, 1493
CviAII	CATG	4 cut(s)	248, 1159, 1201, 1406
CviQI	GTAC	4 cut(s)	49, 429, 736, 1493
DdeI	CTNAG	3 cut(s)	459, 681, 1501
DpnI	GATC	4 cut(s)	395, 836, 1169, 1376
DpnII	GATC	4 cut(s)	393, 834, 1167, 1374
DrdI	GACNNNNNNGTC	1 cut(s)	116
DriI	GACNNNNNGTC	1 cut(s)	561
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	3 cut(s)	97, 566, 1456
Eam1105I	GACNNNNNGTC	1 cut(s)	561
EarI	CTCTTC	3 cut(s)	97, 566, 1456
Eco130I	CCWWGG	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	248, 629
Eco88I	CYCGRG	1 cut(s)	269
EcoNI	CCTNNNNNAGG	1 cut(s)	1369
EcoO109I	RGGNCCY	1 cut(s)	1411
EcoRI	GAATTC	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	1128
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	4 cut(s)	251, 1162, 1204, 1409
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 602, 634
FaqI	GGGAC	2 cut(s)	392, 873
FatI	CATG	4 cut(s)	247, 1158, 1200, 1405
FauI	CCCGC	1 cut(s)	225
FbaI	TGATCA	1 cut(s)	1167
FblI	GTMKAC	3 cut(s)	120, 129, 842
Fnu4HI	GCNGC	2 cut(s)	942, 954
FokI	GGATG	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	942, 954
FspBI	CTAG	3 cut(s)	237, 450, 588
GlaI	GCGC	1 cut(s)	1499
GluI	GCNGC	2 cut(s)	942, 954
HaeIII	GGCC	2 cut(s)	625, 1412
HapII	CCGG	1 cut(s)	827
HgaI	GACGC	1 cut(s)	1351
HhaI	GCGC	1 cut(s)	1500
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	251, 1162, 1204, 1409
Hin6I	GCGC	1 cut(s)	1498
HinP1I	GCGC	1 cut(s)	1498
HincII	GTYRAC	2 cut(s)	121, 1485
HindII	GTYRAC	2 cut(s)	121, 1485
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	556, 1033, 1505
HpaII	CCGG	1 cut(s)	827
HphI	GGTGA	4 cut(s)	27, 805, 816, 1001
Hpy166II	GTNNAC	6 cut(s)	121, 130, 843, 1198, 1298, 1485
Hpy188I	TCNGA	4 cut(s)	228, 717, 1264, 1504
Hpy188III	TCNNGA	8 cut(s)	202, 269, 397, 505, 566, 1165, 1417, 1466
Hpy8I	GTNNAC	6 cut(s)	121, 130, 843, 1198, 1298, 1485
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	898, 907, 1365
HpyCH4III	ACNGT	6 cut(s)	113, 127, 433, 484, 1152, 1472
HpyCH4IV	ACGT	4 cut(s)	117, 381, 839, 1316
HpyCH4V	TGCA	9 cut(s)	323, 634, 972, 977, 1043, 1093, 1126, 1158, 1327
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 455, 631, 677, 950
HpyF3I	CTNAG	3 cut(s)	459, 681, 1501
HpySE526I	ACGT	4 cut(s)	117, 381, 839, 1316
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	251, 1162, 1204, 1409
HspAI	GCGC	1 cut(s)	1498
Ksp22I	TGATCA	1 cut(s)	1167
Kzo9I	GATC	4 cut(s)	393, 834, 1167, 1374
LguI	GCTCTTC	1 cut(s)	1456
LmnI	GCTCC	3 cut(s)	152, 916, 1104
Lsp1109I	GCAGC	1 cut(s)	940
LweI	GCATC	3 cut(s)	574, 982, 1113
MaeI	CTAG	3 cut(s)	237, 450, 588
MaeII	ACGT	4 cut(s)	117, 381, 839, 1316
MaeIII	GTNAC	3 cut(s)	113, 809, 1085
MalI	GATC	4 cut(s)	395, 836, 1169, 1376
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	4 cut(s)	393, 834, 1167, 1374
MboII	GAAGA	7 cut(s)	84, 363, 583, 1066, 1351, 1443, 1454
MfeI	CAATTG	1 cut(s)	739
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	7 cut(s)	66, 280, 412, 521, 739, 964, 1054
MlyI	GAGTC	2 cut(s)	550, 1042
MmeI	TCCRAC	1 cut(s)	641
Mph1103I	ATGCAT	1 cut(s)	1128
MseI	TTAA	3 cut(s)	642, 789, 1179
MslI	CAYNNNNRTG	1 cut(s)	1153
MspA1I	CMGCKG	2 cut(s)	671, 1213
MspI	CCGG	1 cut(s)	827
MunI	CAATTG	1 cut(s)	739
MwoI	GCNNNNNNNGC	5 cut(s)	11, 455, 631, 677, 950
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	4 cut(s)	393, 834, 1167, 1374
NlaIII	CATG	4 cut(s)	251, 1162, 1204, 1409
NmeAIII	GCCGAG	1 cut(s)	651
NmuCI	GTSAC	3 cut(s)	113, 809, 1085
NsiI	ATGCAT	1 cut(s)	1128
NspI	RCATGY	1 cut(s)	1162
NspV	TTCGAA	1 cut(s)	366
OliI	CACNNNNGTG	1 cut(s)	1153
PaeR7I	CTCGAG	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	1456
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	1505
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	943, 955
PleI	GAGTC	2 cut(s)	550, 1041
PpsI	GAGTC	2 cut(s)	550, 1041
Ppu21I	YACGTR	1 cut(s)	840
PspPI	GGNCC	1 cut(s)	1411
PsyI	GACNNNGTC	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	1213
RsaI	GTAC	4 cut(s)	50, 430, 737, 1494
RsaNI	GTAC	4 cut(s)	49, 429, 736, 1493
RseI	CAYNNNNRTG	1 cut(s)	1153
SalI	GTCGAC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	1456
SaqAI	TTAA	3 cut(s)	642, 789, 1179
SatI	GCNGC	2 cut(s)	942, 954
Sau3AI	GATC	4 cut(s)	393, 834, 1167, 1374
Sau96I	GGNCC	1 cut(s)	1411
SchI	GAGTC	2 cut(s)	550, 1042
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	3 cut(s)	574, 982, 1113
Sfr274I	CTCGAG	1 cut(s)	269
SfuI	TTCGAA	1 cut(s)	366
SlaI	CTCGAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	1153
SmlI	CTYRAG	2 cut(s)	269, 1415
SmoI	CTYRAG	2 cut(s)	269, 1415
Sse9I	AATT	7 cut(s)	66, 280, 412, 521, 739, 964, 1054
SsiI	CCGC	6 cut(s)	56, 133, 189, 232, 671, 941
SspMI	CTAG	3 cut(s)	237, 450, 588
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	6 cut(s)	113, 127, 433, 484, 1152, 1472
TaiI	ACGT	4 cut(s)	120, 384, 842, 1319
TasI	AATT	7 cut(s)	66, 280, 412, 521, 739, 964, 1054
TauI	GCSGC	1 cut(s)	944
TfiI	GAWTC	1 cut(s)	1505
Tru1I	TTAA	3 cut(s)	642, 789, 1179
Tru9I	TTAA	3 cut(s)	642, 789, 1179
TscAI	CASTG	3 cut(s)	118, 130, 292
TseFI	GTSAC	3 cut(s)	113, 809, 1085
TseI	GCWGC	1 cut(s)	953
Tsp45I	GTSAC	3 cut(s)	113, 809, 1085
TspDTI	ATGAA	1 cut(s)	926
TspRI	CASTG	3 cut(s)	118, 130, 292
Tth111I	GACNNNGTC	1 cut(s)	125
XagI	CCTNNNNNAGG	1 cut(s)	1369
XapI	RAATTY	3 cut(s)	412, 521, 964
XceI	RCATGY	1 cut(s)	1162
XhoI	CTCGAG	1 cut(s)	269
XmiI	GTMKAC	3 cut(s)	120, 129, 842
XspI	CTAG	3 cut(s)	237, 450, 588
ZraI	GACGTC	1 cut(s)	118
Zsp2I	ATGCAT	1 cut(s)	1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.