Rh7BG389300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012017
Physical Location & Seq
Reverse (-)
42509436 .. 42510956
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG389300.1

Sequence Viewer

Length: 1521 bp
ATGATGGCACTCAAAGCTAAACCCCTCTCATCCCCATCACCATTTTTCAGGTACTCGCCGCAAAACCCAATTTTCTTTCTCCCTCGATTACTCTCTTCCCAAACCCCAATCGACAGTGACGTCGACACTGTCTACCGCATAGTCAGTAGCTCCACCCACTCCAAAAACTTGAAGCAAAACTTGAAATCGAGTGGTGTTTTCCTCTCGAATGATTTGATAGATGAGGTTCTGAAGCGTGCTAGGTTCAGCCATGGAAACCCTTTACAGGCTCTCGAGTTTTTCAATTACACTGGGAATAGAAGAGGGTTTTATCACACCACGTTTGCACTCGATACAATGCTTTATATGTTGGGAAGAAGTCGAATGTTCGAAAAGATGTGGGAGGTTTTGGTTGAGATCAAGAATAAGGATAGGAATTTGATAACTCCTCGTACTGTGATGGTTGTTTTAGCTAGGATTGCTAAGGTTTGTTCTGTTAGGGAGACTGTGGAGTGTTTTAGAAAGTTCAAGAAGCTTGTGCCCGAATTCGACACGGCTTGTTTCAATGCGTTGTTGAGGACTCTTTGTCAAGAGAAGAGTATGACAGATGCTAGGAATGTGTATCATAAGCTGAAGCAGAGCTTTAGGCCGAATTTGCAGACCTTTAATATATTGTTATCGGGTTGGAAGTCGTCGGAGGAAGCCGAGGGGTTTTTCGAGGAGATGAGGGAGATGGGTCTGAAACCTGATATTGTTTCGTACAATTGTTTGATCGATGTTTATAGTAAGAATAGAGAAATGGAGAAAGCGTTTAAGGTGATGGAAAAAATGCGTGACGAGGATATATCACCGGATAAAATCACGTATACTTGTGTCATTGGGGGATTGGGGTTGGTTGGTCAGCCTGATAAAGCCAAAGATGTGTTGAAGGAAATGAAGGAGCTTGGGTGCTACCCAGATGTTGCGGCATACAATGCTGCCATTAGGAATTTTTGCATTGCAAAGAGGCTTGGTGATGCTAATGGGTTGATGGAGGAGATGATAAGTAATGGTTTGAGTCCAAATGCAACTACTTACAATTTGTTCTTTAGGGTTTTCTTCTGGTCAAGTGACTTGCAGAACTCTTGGAGCATGTATGGGAGAATGATGCATACTGGGTGTCTGCCTAATACACAGTCGTGCATGTTCCTGATCAGGTTGTTTAAGAGGCTGGAAAAGGTGGATATGGCATTGCAGCTGTGGAATGATATGGTCGAGAGGGGTTTTGGGTCTTATATATTGGTATCTGATGTGCTGTTTGATTTGCTGTGTGATATGGGTAAACTAACAGAAGCAGAAACGTGCTTCTTGCTGATGGTGGAGAAGGGGCATAAGCCAAGTAATGTTTCCTTTAGAAGGATCAAGGTGCTTATGGAACTGGCAAACAAGCATGAGGCCCTCAAGAACTTGACAGATAAAATGGCACTTTTTGGCTCTTCAATCCATCTTCCTGAGAGTATGGATAGGTCAACAGAGGTACCACGCTCAGAACCACTTGCTTGA

Protein Analysis

506

Amino Acids

58.13

Weight (kDa)

8.83

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 177 - 221 6.2e-07 PPR repeat family
PPR_3 PF13812 232 - 288 2e-11 Pentatricopeptide repeat domain
PPR_long PF17177 232 - 358 4.9e-10 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 235 - 321 1.6e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 238 - 271 2.8e-09 PPR repeat
PPR_2 PF13041 242 - 289 7e-17 PPR repeat family
PPR PF01535 245 - 274 6.7e-08 PPR repeat
PPR_3 PF13812 273 - 322 1.5e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 274 - 306 6.9e-06 PPR repeat
PPR PF01535 280 - 310 7.8e-07 PPR repeat
PPR_2 PF13041 284 - 325 4.7e-07 PPR repeat family
PPR_3 PF13812 301 - 358 7.4e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 312 - 359 3.8e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012017)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02420
fragaria_vesca FvH4_5g32610 FvH4_5g32610 FvH4_5g32610
malus_domestica MD08G1216300.v1.1
prunus_persica Prupe.1G549200_v2.0.a1
pyrus_communis pycom08g18730
rosa_chinensis RchiOBHm_Chr7g0230241
rosa_laevigata RLG00000001507
rosa_multiflora Rmu_sc0002822.1_g000019 Rmu_sc0008506.1_g000024
rosa_roxburghii Rroxscaffold_3G00230280
rosa_rugosa Rorug07G0260000
rosa_samantha Rh7AG409400 Rh7BG389300 Rh7CG428000 Rh7DG407000
rosa_wichuraiana Rw0G018590 Rw0G022620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AatII GACGTC 1 cut(s) 123
Acc65I GGTACC 1 cut(s) 1495
AccB1I GGYRCC 1 cut(s) 1495
AccI GTMKAC 3 cut(s) 123, 132, 845
AciI CCGC 3 cut(s) 59, 136, 944
AclWI GGATC 1 cut(s) 1385
AcsI RAATTY 4 cut(s) 415, 524, 631, 967
AcuI CTGAAG 2 cut(s) 251, 632
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 4 cut(s) 53, 433, 740, 1497
AfiI CCNNNNNNNGG 2 cut(s) 265, 1374
AgsI TTSAA 7 cut(s) 172, 184, 283, 508, 544, 907, 1458
AhdI GACNNNNNGTC 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 1348, 1380
AleI CACNNNNGTG 1 cut(s) 1156
AluBI AGCT 8 cut(s) 17, 150, 452, 514, 610, 621, 922, 1216
AluI AGCT 8 cut(s) 17, 150, 452, 514, 610, 621, 922, 1216
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 1 cut(s) 1385
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 2 cut(s) 626, 1413
ApeKI GCWGC 2 cut(s) 956, 1213
ApoI RAATTY 4 cut(s) 415, 524, 631, 967
Asp718I GGTACC 1 cut(s) 1495
AspS9I GGNCC 1 cut(s) 1414
AsuHPI GGTGA 4 cut(s) 30, 808, 819, 1004
AsuII TTCGAA 1 cut(s) 369
AvaI CYCGRG 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 522
BaeI ACNNNNGTAYC 2 cut(s) 1479, 1512
BanI GGYRCC 1 cut(s) 1495
BbvI GCAGC 2 cut(s) 943, 1225
BccI CCATC 7 cut(s) 43, 433, 706, 793, 1003, 1327, 1470
BceAI ACGGC 1 cut(s) 549
BclI TGATCA 1 cut(s) 1170
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 3 cut(s) 240, 453, 591
BisI GCNGC 4 cut(s) 59, 945, 957, 1214
BlsI GCNGC 4 cut(s) 60, 946, 958, 1215
BmeRI GACNNNNNGTC 1 cut(s) 564
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 1414
BmiI GGNNCC 1 cut(s) 1497
BmrI ACTGGG 2 cut(s) 300, 1143
BmsI GCATC 3 cut(s) 577, 985, 1116
BmuI ACTGGG 2 cut(s) 300, 1143
Bpu10I CCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 1403
Bsa29I ATCGAT 1 cut(s) 753
BsaAI YACGTR 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 250, 684
BsaWI WCCGGW 1 cut(s) 829
BsaXI ACNNNNNCTCC 4 cut(s) 773, 803, 911, 941
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 1374
Bse1I ACTGG 3 cut(s) 295, 1138, 1401
Bse3DI GCAATG 2 cut(s) 975, 1208
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 2 cut(s) 250, 684
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 2 cut(s) 265, 1374
BseMI GCAATG 2 cut(s) 975, 1208
BseMII CTCAG 2 cut(s) 1461, 1518
BseNI ACTGG 3 cut(s) 295, 1138, 1401
BseRI GAGGAG 3 cut(s) 417, 713, 1028
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 2 cut(s) 943, 1225
BshFI GGCC 2 cut(s) 628, 1415
BshNI GGYRCC 1 cut(s) 1495
BshVI ATCGAT 1 cut(s) 753
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 1 cut(s) 830
BslI CCNNNNNNNGG 2 cut(s) 265, 1374
BsmAI GTCTC 1 cut(s) 476
BsnI GGCC 2 cut(s) 628, 1415
BsoBI CYCGRG 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 4 cut(s) 396, 750, 1170, 1377
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 3 cut(s) 59, 136, 944
BspANI GGCC 2 cut(s) 628, 1415
BspCNI CTCAG 2 cut(s) 1462, 1517
BspDI ATCGAT 1 cut(s) 753
BspLI GGNNCC 1 cut(s) 1497
BspPI GGATC 1 cut(s) 1385
BspQI GCTCTTC 1 cut(s) 1459
BspT104I TTCGAA 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 1495
BsrDI GCAATG 2 cut(s) 975, 1208
BsrI ACTGG 3 cut(s) 295, 1138, 1401
BssECI CCNNGG 2 cut(s) 250, 684
BssMI GATC 4 cut(s) 396, 750, 1170, 1377
BssNAI GTATAC 1 cut(s) 846
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 250
Bst1107I GTATAC 1 cut(s) 846
Bst4CI ACNGT 5 cut(s) 116, 130, 436, 487, 1155
Bst6I CTCTTC 4 cut(s) 100, 295, 569, 1459
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 953
BstBAI YACGTR 1 cut(s) 843
BstBI TTCGAA 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 3 cut(s) 462, 1470, 1504
BstDSI CCRYGG 1 cut(s) 250
BstENI CCTNNNNNAGG 1 cut(s) 1372
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 4 cut(s) 399, 753, 1173, 1380
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 4 cut(s) 396, 750, 1170, 1377
BstMWI GCNNNNNNNGC 4 cut(s) 14, 458, 634, 953
BstNSI RCATGY 2 cut(s) 1114, 1165
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 943, 1225
BstZ17I GTATAC 1 cut(s) 846
Bsu15I ATCGAT 1 cut(s) 753
BsuRI GGCC 2 cut(s) 628, 1415
BsuTUI ATCGAT 1 cut(s) 753
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 3 cut(s) 121, 126, 288
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 1414
ClaI ATCGAT 1 cut(s) 753
Csp6I GTAC 4 cut(s) 52, 432, 739, 1496
CviAII CATG 4 cut(s) 251, 1111, 1162, 1409
CviQI GTAC 4 cut(s) 52, 432, 739, 1496
DdeI CTNAG 3 cut(s) 462, 1470, 1504
DpnI GATC 4 cut(s) 398, 752, 1172, 1379
DpnII GATC 4 cut(s) 396, 750, 1170, 1377
DrdI GACNNNNNNGTC 1 cut(s) 119
DriI GACNNNNNGTC 1 cut(s) 564
DseDI GACNNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 4 cut(s) 100, 295, 569, 1459
Eam1105I GACNNNNNGTC 1 cut(s) 564
EarI CTCTTC 4 cut(s) 100, 295, 569, 1459
Eco130I CCWWGG 1 cut(s) 250
Eco57I CTGAAG 2 cut(s) 251, 632
Eco88I CYCGRG 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 1372
EcoO109I RGGNCCY 1 cut(s) 1414
EcoRI GAATTC 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 1131
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 4 cut(s) 254, 1114, 1165, 1412
FalI AAGNNNNNCTT 4 cut(s) 164, 196, 605, 637
FatI CATG 4 cut(s) 250, 1110, 1161, 1408
FbaI TGATCA 1 cut(s) 1170
FblI GTMKAC 3 cut(s) 123, 132, 845
Fnu4HI GCNGC 4 cut(s) 59, 945, 957, 1214
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 4 cut(s) 59, 945, 957, 1214
FspBI CTAG 3 cut(s) 240, 453, 591
GluI GCNGC 4 cut(s) 59, 945, 957, 1214
HaeIII GGCC 2 cut(s) 628, 1415
HapII CCGG 1 cut(s) 830
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 4 cut(s) 254, 1114, 1165, 1412
HincII GTYRAC 2 cut(s) 124, 1488
HindII GTYRAC 2 cut(s) 124, 1488
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 2 cut(s) 559, 1036
HpaII CCGG 1 cut(s) 830
HphI GGTGA 4 cut(s) 30, 808, 819, 1004
Hpy166II GTNNAC 5 cut(s) 124, 133, 846, 1301, 1488
Hpy188I TCNGA 5 cut(s) 231, 676, 720, 1267, 1507
Hpy188III TCNNGA 9 cut(s) 205, 272, 400, 508, 569, 1168, 1234, 1420, 1469
Hpy8I GTNNAC 5 cut(s) 124, 133, 846, 1301, 1488
Hpy99I CGWCG 2 cut(s) 125, 676
HpyAV CCTTC 4 cut(s) 901, 910, 1336, 1368
HpyCH4III ACNGT 5 cut(s) 116, 130, 436, 487, 1155
HpyCH4IV ACGT 4 cut(s) 120, 320, 842, 1319
HpyCH4V TGCA 9 cut(s) 326, 637, 975, 980, 1046, 1096, 1129, 1161, 1213
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 458, 634, 953
HpyF3I CTNAG 3 cut(s) 462, 1470, 1504
HpySE526I ACGT 4 cut(s) 120, 320, 842, 1319
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 4 cut(s) 254, 1114, 1165, 1412
KpnI GGTACC 1 cut(s) 1499
Ksp22I TGATCA 1 cut(s) 1170
Kzo9I GATC 4 cut(s) 396, 750, 1170, 1377
LguI GCTCTTC 1 cut(s) 1459
LmnI GCTCC 3 cut(s) 155, 919, 1107
Lsp1109I GCAGC 2 cut(s) 943, 1225
LweI GCATC 3 cut(s) 577, 985, 1116
MaeI CTAG 3 cut(s) 240, 453, 591
MaeII ACGT 4 cut(s) 120, 320, 842, 1319
MaeIII GTNAC 3 cut(s) 116, 812, 1088
MalI GATC 4 cut(s) 398, 752, 1172, 1379
MboI GATC 4 cut(s) 396, 750, 1170, 1377
MboII GAAGA 7 cut(s) 87, 312, 366, 586, 1069, 1446, 1457
MfeI CAATTG 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 8 cut(s) 69, 283, 415, 524, 631, 742, 967, 1057
MlyI GAGTC 2 cut(s) 553, 1045
MmeI TCCRAC 2 cut(s) 644, 654
Mph1103I ATGCAT 1 cut(s) 1131
MseI TTAA 3 cut(s) 645, 792, 1182
MslI CAYNNNNRTG 1 cut(s) 1156
MspA1I CMGCKG 1 cut(s) 1216
MspI CCGG 1 cut(s) 830
MunI CAATTG 1 cut(s) 742
MwoI GCNNNNNNNGC 4 cut(s) 14, 458, 634, 953
NcoI CCATGG 1 cut(s) 250
NdeII GATC 4 cut(s) 396, 750, 1170, 1377
NlaIII CATG 4 cut(s) 254, 1114, 1165, 1412
NlaIV GGNNCC 1 cut(s) 1497
NmeAIII GCCGAG 1 cut(s) 709
NmuCI GTSAC 3 cut(s) 116, 812, 1088
NsiI ATGCAT 1 cut(s) 1131
NspI RCATGY 2 cut(s) 1114, 1165
NspV TTCGAA 1 cut(s) 369
OliI CACNNNNGTG 1 cut(s) 1156
PaeR7I CTCGAG 1 cut(s) 272
PciSI GCTCTTC 1 cut(s) 1459
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 4 cut(s) 60, 946, 958, 1215
PleI GAGTC 2 cut(s) 553, 1044
PpsI GAGTC 2 cut(s) 553, 1044
Ppu21I YACGTR 1 cut(s) 843
PspN4I GGNNCC 1 cut(s) 1497
PspPI GGNCC 1 cut(s) 1414
PsyI GACNNNGTC 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 1216
RsaI GTAC 4 cut(s) 53, 433, 740, 1497
RsaNI GTAC 4 cut(s) 52, 432, 739, 1496
RseI CAYNNNNRTG 1 cut(s) 1156
SalI GTCGAC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 1459
SaqAI TTAA 3 cut(s) 645, 792, 1182
SatI GCNGC 4 cut(s) 59, 945, 957, 1214
Sau3AI GATC 4 cut(s) 396, 750, 1170, 1377
Sau96I GGNCC 1 cut(s) 1414
SchI GAGTC 2 cut(s) 553, 1045
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 3 cut(s) 577, 985, 1116
Sfr274I CTCGAG 1 cut(s) 272
SfuI TTCGAA 1 cut(s) 369
SlaI CTCGAG 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 1156
SmlI CTYRAG 2 cut(s) 272, 1418
SmoI CTYRAG 2 cut(s) 272, 1418
Sse9I AATT 8 cut(s) 69, 283, 415, 524, 631, 742, 967, 1057
SsiI CCGC 3 cut(s) 59, 136, 944
SspMI CTAG 3 cut(s) 240, 453, 591
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 5 cut(s) 116, 130, 436, 487, 1155
TaiI ACGT 4 cut(s) 123, 323, 845, 1322
TasI AATT 8 cut(s) 69, 283, 415, 524, 631, 742, 967, 1057
TauI GCSGC 2 cut(s) 61, 947
Tru1I TTAA 3 cut(s) 645, 792, 1182
Tru9I TTAA 3 cut(s) 645, 792, 1182
TscAI CASTG 3 cut(s) 121, 133, 295
TseFI GTSAC 3 cut(s) 116, 812, 1088
TseI GCWGC 2 cut(s) 956, 1213
Tsp45I GTSAC 3 cut(s) 116, 812, 1088
TspDTI ATGAA 1 cut(s) 929
TspRI CASTG 3 cut(s) 121, 133, 295
Tth111I GACNNNGTC 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 1372
XapI RAATTY 4 cut(s) 415, 524, 631, 967
XceI RCATGY 2 cut(s) 1114, 1165
XhoI CTCGAG 1 cut(s) 272
XmiI GTMKAC 3 cut(s) 123, 132, 845
XspI CTAG 3 cut(s) 240, 453, 591
ZraI GACGTC 1 cut(s) 121
Zsp2I ATGCAT 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.