AT1G03170

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013161
Physical Location & Seq
Forward (+)
768376 .. 770684
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03170.1

Sequence Viewer

Length: 723 bp
ATGTCACTTGTTGTTTGTCAACCTCAAATAAACGAGAGTTTCTATCAAAAAGATGACATGGGTGGGTTGAGTTTCCTACAATCTATGTCCGATATCACTTCCATTGCCCAAACCAAAGAGGATAAAGCTTATGTTCACCCGATGGAGAAACGCTCTGTTTCTAAACTGAACGAGAAAAGCTTGGAGATGTGCACTGAGAGTCTCGGAACCGAAACAGGAAGCGAGAGTGGTGACGAGTTGTCATTGCTTGCGTTTGAAGCAACCACTACTCCTAGGGCTCCTCCTCGTCAACTGAAACCTCAAGAAGATACTAACTTGCCGGACAAGACACCGCCGATGAGTCGCAACAACAGTTTCCCACCGCCGATAAAGTTCGTTGAAGACTCAAAGTATAATCGTATGGTGAGATGGTTAGGAGAAGATGGTCGAATTGTAGTTCAAGCAATTAGGGTTTCGTCTCCGCCTAGTTGCTTTGTATCAGAACGTGGTGAAGGAAGGCTTCGTCTCATTTTAACGTCGGAAAGTTCTCTTCTTAGTCACAATCACGAGGAGGAGGAAGAAGAAGAAACAGAGGAGGGCATCGACGAGGAAACTAGTGAGAACTTGGAGGGTAAAAGTGGAAATAAAAAGTTTAGCAGATTCAGCAGAAGATGCAAGGAGAATGGTCGTGAGCCTAAACCAATGCTCACTTGGAAGCAGCAGCAGTTTTGGGTCGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

240

Amino Acids

27.26

Weight (kDa)

5.04

Isoelectric Point (pI)

68.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 118 - 170 7.3e-15 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 332, 362, 461
AgsI TTSAA 3 cut(s) 257, 380, 440
AhdI GACNNNNNGTC 1 cut(s) 238
AhlI ACTAGT 1 cut(s) 593
AluBI AGCT 2 cut(s) 128, 180
AluI AGCT 2 cut(s) 128, 180
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 3 cut(s) 206, 462, 509
Alw44I GTGCAC 1 cut(s) 190
ApaLI GTGCAC 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 697, 700
AspA2I CCTAGG 1 cut(s) 272
AsuHPI GGTGA 4 cut(s) 128, 242, 415, 500
AvrII CCTAGG 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 280
BauI CACGAG 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 709, 712
BccI CCATC 3 cut(s) 136, 402, 416
BcoDI GTCTC 3 cut(s) 206, 462, 509
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 3 cut(s) 273, 465, 594
BisI GCNGC 2 cut(s) 698, 701
BlnI CCTAGG 1 cut(s) 272
BlsI GCNGC 2 cut(s) 699, 702
BmeRI GACNNNNNGTC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 208, 279
BmsI GCATC 2 cut(s) 588, 641
BpiI GAAGAC 1 cut(s) 387
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BpuEI CTTGAG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bse3DI GCAATG 2 cut(s) 102, 242
BseDI CCNNGG 1 cut(s) 272
BseMI GCAATG 2 cut(s) 102, 242
BseMII CTCAG 1 cut(s) 186
BseRI GAGGAG 5 cut(s) 270, 273, 563, 566, 587
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 2 cut(s) 709, 712
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 1 cut(s) 320
BsmAI GTCTC 3 cut(s) 206, 462, 509
BsmBI CGTCTC 2 cut(s) 462, 509
Bsp1286I GDGCHC 2 cut(s) 194, 280
BspACI CCGC 3 cut(s) 332, 362, 461
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 208, 279
BsrDI GCAATG 2 cut(s) 102, 242
BssECI CCNNGG 1 cut(s) 272
BssSI CACGAG 1 cut(s) 545
BssT1I CCWWGG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 545
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 534
BstAPI GCANNNNNTGC 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 195, 533
BstMAI GTCTC 3 cut(s) 206, 462, 509
BstMWI GCNNNNNNNGC 3 cut(s) 257, 642, 651
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 709, 712
BstV2I GAAGAC 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 249
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 128, 180, 278, 499, 673
CviKI_1 RGCY 5 cut(s) 128, 180, 278, 499, 673
DdeI CTNAG 2 cut(s) 195, 533
DriI GACNNNNNGTC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 534
Eam1105I GACNNNNNGTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 534
EciI GGCGGA 1 cut(s) 450
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 280
Eco32I GATATC 1 cut(s) 94
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 272
Esp3I CGTCTC 2 cut(s) 462, 509
FaeI CATG 1 cut(s) 61
FaiI YATR 5 cut(s) 59, 86, 132, 393, 401
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 698, 701
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 2 cut(s) 698, 701
FspBI CTAG 3 cut(s) 273, 465, 594
GluI GCNGC 2 cut(s) 698, 701
HapII CCGG 1 cut(s) 320
Hin1II CATG 1 cut(s) 61
HincII GTYRAC 2 cut(s) 20, 290
HindII GTYRAC 2 cut(s) 20, 290
HindIII AAGCTT 2 cut(s) 126, 178
HinfI GANTC 4 cut(s) 199, 340, 383, 639
HpaII CCGG 1 cut(s) 320
HphI GGTGA 4 cut(s) 128, 242, 415, 500
Hpy166II GTNNAC 4 cut(s) 20, 136, 192, 290
Hpy188I TCNGA 4 cut(s) 91, 206, 481, 520
Hpy188III TCNNGA 3 cut(s) 302, 545, 668
Hpy8I GTNNAC 4 cut(s) 20, 136, 192, 290
Hpy99I CGWCG 2 cut(s) 520, 587
HpyAV CCTTC 2 cut(s) 485, 489
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4IV ACGT 2 cut(s) 484, 515
HpyCH4V TGCA 2 cut(s) 192, 654
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 642, 651
HpyF3I CTNAG 2 cut(s) 195, 533
HpySE526I ACGT 2 cut(s) 484, 515
Hsp92II CATG 1 cut(s) 61
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 2 cut(s) 201, 333
Lsp1109I GCAGC 2 cut(s) 709, 712
LweI GCATC 2 cut(s) 588, 641
MaeI CTAG 3 cut(s) 273, 465, 594
MaeII ACGT 2 cut(s) 484, 515
MaeIII GTNAC 3 cut(s) 3, 230, 536
MboII GAAGA 8 cut(s) 317, 392, 431, 521, 569, 572, 575, 660
MhlI GDGCHC 2 cut(s) 194, 280
MluCI AATT 2 cut(s) 429, 444
MlyI GAGTC 3 cut(s) 208, 349, 377
MmeI TCCRAC 1 cut(s) 498
MseI TTAA 2 cut(s) 512, 721
MspI CCGG 1 cut(s) 320
MwoI GCNNNNNNNGC 3 cut(s) 257, 642, 651
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 208, 279
NmuCI GTSAC 3 cut(s) 3, 230, 536
PfeI GAWTC 1 cut(s) 639
PkrI GCNGC 2 cut(s) 699, 702
PleI GAGTC 3 cut(s) 207, 348, 377
PpsI GAGTC 3 cut(s) 207, 348, 377
PspN4I GGNNCC 2 cut(s) 208, 279
SaqAI TTAA 2 cut(s) 512, 721
SatI GCNGC 2 cut(s) 698, 701
SchI GAGTC 3 cut(s) 208, 349, 377
SduI GDGCHC 2 cut(s) 194, 280
SetI ASST 6 cut(s) 25, 130, 182, 301, 487, 518
SfaNI GCATC 2 cut(s) 588, 641
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 2 cut(s) 429, 444
SsiI CCGC 3 cut(s) 332, 362, 461
SspMI CTAG 3 cut(s) 273, 465, 594
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 353
TaiI ACGT 2 cut(s) 487, 518
TaqI TCGA 2 cut(s) 427, 582
TasI AATT 2 cut(s) 429, 444
TfiI GAWTC 1 cut(s) 639
Tru1I TTAA 2 cut(s) 512, 721
Tru9I TTAA 2 cut(s) 512, 721
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 3 cut(s) 3, 230, 536
TseI GCWGC 2 cut(s) 697, 700
Tsp45I GTSAC 3 cut(s) 3, 230, 536
TspRI CASTG 1 cut(s) 199
VneI GTGCAC 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 687
XmaJI CCTAGG 1 cut(s) 272
XspI CTAG 3 cut(s) 273, 465, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.