pycom11g25370

Protein FANTASTIC FOUR 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013161
Physical Location & Seq
Forward (+)
28193327 .. 28194418
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25370.1

Sequence Viewer

Length: 1092 bp
ATGTCTTCAACATCAAGCACTGTCTGTCATCAAGTGATGAAATCATGCCTCGAGCCTCTTGTTCGCCTCAAACTGAATCCACCGGGGTCAAATTTCCTCCCCGAATCTCCAGAGAAAACATCCCACCTCGAAAAAATTGATAACTTGGACTTGATCAACAAGAAGGACAACAAGGAAGTTGAAGTAGCTGGCTGGAGCTTCCTCCAGTCTCTGGGCAACCCAACTCAAACCGCCAAAAGCGAAAGCGAAGCAGAGAAAGTCTATGTCCACCCGCTCGCTAAGCGCTCTGCTTCAGTGCTCAGTCCAAGAAGCTTGGAAATGTGCACTGAAAGCTTAGGTAACGAGACGGGTAGCGAAAATGGTGGCGACAAGCTCTCTCTTTTGTTACACAAGATTGAAAGTCCTTTGCTCTCACTAGGAAGTAGTGGGGAGGTTAACCCTAACCCTAGATGTTCAACTACTACTATTACAAGTGAGAGTCCAAAAATACTGGGTGACAACAATGTTCAAGCTACACCAAAGAGATTGAAAAGTGGTAGTGCAACTACTACAAATTTCCCTCCTCCTTTGACATCTATCAGTGGCTCCAATGGTGTCCAAGTGACGCCTCACCGGGAAGGCGGGCGGCTGGTTTTGAAAGCTGTCACTGTAGTCTCCCCTCCCACCGCCAATTTCCAGGCGGAGCGCGGTGATGGGAGGCTCAGGCTTACATTGCTGAAGGACATTTCATCCCCTAACTGTGACATTATTGAAGAAGTTGGGCTTGAAGAAGTTGAAGAAGATGACGAGTTTAAAATCGAGGCAAAAAATGAAGAAAATGGTGGTGAAGTTGAAGCTGAGGAGATTGATGGGAAGGTTGAAAATGTTGAAACAGAGGAGATGCAGGGGGATACTGTAAGTGTTGAAACAGAGGAGGTGGAGGGGAAGAATGAACACGTTGAAAATGAGGATATGGAAGGGAATAGTGGAAATGTTGGGGGTGAAAAGGGGATGGAAAAGAAGCTCCCAAGGCCAAGCAGATGTAAGGAAGGTGGGCGTGGAAACAAGAAGATGGTCATGAATTGGCCGGAGTCCTTTTGGGTTGCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

364

Amino Acids

39.35

Weight (kDa)

4.85

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 185 - 238 1.9e-18 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 274
AccII CGCG 1 cut(s) 687
AciI CCGC 7 cut(s) 231, 272, 621, 625, 666, 680, 687
AcoI YGGCCR 1 cut(s) 1064
AcsI RAATTY 2 cut(s) 91, 553
AcuI CTGAAG 2 cut(s) 276, 737
AcyI GRCGYC 1 cut(s) 605
AfeI AGCGCT 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 934
AjnI CCWGG 1 cut(s) 675
AluBI AGCT 9 cut(s) 188, 198, 312, 333, 373, 512, 641, 836, 1003
AluI AGCT 9 cut(s) 188, 198, 312, 333, 373, 512, 641, 836, 1003
Alw21I GWGCWC 2 cut(s) 300, 326
Alw26I GTCTC 3 cut(s) 213, 338, 658
Alw44I GTGCAC 1 cut(s) 322
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 50
Aor51HI AGCGCT 1 cut(s) 284
AoxI GGCC 2 cut(s) 1010, 1064
ApaLI GTGCAC 1 cut(s) 322
ApoI RAATTY 2 cut(s) 91, 553
AspLEI GCGC 2 cut(s) 285, 687
AsuC2I CCSGG 2 cut(s) 84, 614
AsuHPI GGTGA 5 cut(s) 506, 602, 701, 836, 992
AvaI CYCGRG 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 326
Bbv12I GWGCWC 2 cut(s) 300, 326
BbvCI CCTCAGC 1 cut(s) 837
BccI CCATC 4 cut(s) 686, 842, 985, 1045
BciT130I CCWGG 1 cut(s) 677
BciVI GTATCC 1 cut(s) 883
BclI TGATCA 1 cut(s) 153
BcnI CCSGG 2 cut(s) 84, 614
BcoDI GTCTC 3 cut(s) 213, 338, 658
BfaI CTAG 2 cut(s) 416, 447
BfmI CTRYAG 1 cut(s) 648
BfoI RGCGCY 1 cut(s) 286
BfuI GTATCC 1 cut(s) 883
BisI GCNGC 1 cut(s) 626
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 627
Bme1390I CCNGG 3 cut(s) 84, 614, 677
BmeT110I CYCGRG 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 586
BmrFI CCNGG 3 cut(s) 84, 614, 677
BmrI ACTGGG 1 cut(s) 500
BmsI GCATC 1 cut(s) 870
BmuI ACTGGG 1 cut(s) 500
BpmI CTGGAG 3 cut(s) 93, 188, 214
Bpu10I CCTNAGC 3 cut(s) 334, 701, 837
Bpu1102I GCTNAGC 1 cut(s) 279
BpuMI CCSGG 2 cut(s) 84, 614
BsaHI GRCGYC 1 cut(s) 605
BsaJI CCNNGG 2 cut(s) 83, 1007
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 2 cut(s) 205, 495
Bse3DI GCAATG 1 cut(s) 710
BseBI CCWGG 1 cut(s) 677
BseDI CCNNGG 2 cut(s) 83, 1007
BseGI GGATG 3 cut(s) 119, 728, 996
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 710
BseMII CTCAG 3 cut(s) 313, 715, 828
BseNI ACTGG 2 cut(s) 205, 495
BseRI GAGGAG 4 cut(s) 552, 854, 890, 926
BseSI GKGCMC 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 687
BshFI GGCC 2 cut(s) 1012, 1066
BsiHKAI GWGCWC 2 cut(s) 300, 326
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 3 cut(s) 83, 613, 1067
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 3 cut(s) 213, 338, 658
BsmBI CGTCTC 1 cut(s) 338
BsnI GGCC 2 cut(s) 1012, 1066
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 300, 326
Bsp143I GATC 1 cut(s) 153
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 7 cut(s) 231, 272, 621, 625, 666, 680, 687
BspANI GGCC 2 cut(s) 1012, 1066
BspCNI CTCAG 3 cut(s) 312, 714, 829
BspFNI CGCG 1 cut(s) 687
BspHI TCATGA 1 cut(s) 1056
BspLI GGNNCC 1 cut(s) 586
BsrBI CCGCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 710
BsrI ACTGG 2 cut(s) 205, 495
BssECI CCNNGG 2 cut(s) 83, 1007
BssMI GATC 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 605
BssT1I CCWWGG 1 cut(s) 1007
Bst2UI CCWGG 1 cut(s) 677
Bst4CI ACNGT 4 cut(s) 22, 649, 740, 895
BstACI GRCGYC 1 cut(s) 605
BstC8I GCNNGC 3 cut(s) 190, 276, 623
BstDEI CTNAG 5 cut(s) 279, 299, 334, 701, 837
BstF5I GGATG 3 cut(s) 119, 728, 996
BstFNI CGCG 1 cut(s) 687
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 2 cut(s) 285, 687
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 3 cut(s) 213, 338, 658
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 4 cut(s) 280, 330, 712, 1009
BstNI CCWGG 1 cut(s) 677
BstSCI CCNGG 3 cut(s) 82, 612, 675
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 1 cut(s) 326
BstUI CGCG 1 cut(s) 687
BsuI GTATCC 1 cut(s) 883
BsuRI GGCC 2 cut(s) 1012, 1066
BtsCI GGATG 3 cut(s) 119, 728, 996
BtsIMutI CAGTG 5 cut(s) 18, 300, 324, 586, 645
Cac8I GCNNGC 3 cut(s) 190, 276, 623
CaiI CAGNNNCTG 1 cut(s) 211
CciI TCATGA 1 cut(s) 1056
CfoI GCGC 2 cut(s) 285, 687
CseI GACGC 1 cut(s) 613
CviAII CATG 2 cut(s) 45, 1057
DdeI CTNAG 5 cut(s) 279, 299, 334, 701, 837
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
DraI TTTAAA 1 cut(s) 793
EaeI YGGCCR 1 cut(s) 1064
EciI GGCGGA 1 cut(s) 695
Eco130I CCWWGG 1 cut(s) 1007
Eco47III AGCGCT 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 276, 737
Eco88I CYCGRG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 675
EcoT14I CCWWGG 1 cut(s) 1007
ErhI CCWWGG 1 cut(s) 1007
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 2 cut(s) 48, 1060
FaiI YATR 4 cut(s) 46, 264, 953, 1058
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FatI CATG 2 cut(s) 44, 1056
FauI CCCGC 2 cut(s) 279, 614
FbaI TGATCA 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 626
FokI GGATG 3 cut(s) 106, 715, 1003
Fsp4HI GCNGC 1 cut(s) 626
FspBI CTAG 2 cut(s) 416, 447
GlaI GCGC 2 cut(s) 284, 686
GluI GCNGC 1 cut(s) 626
GsuI CTGGAG 3 cut(s) 93, 188, 214
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 2 cut(s) 1012, 1066
HapII CCGG 3 cut(s) 83, 613, 1067
HgaI GACGC 1 cut(s) 613
HhaI GCGC 2 cut(s) 285, 687
Hin1I GRCGYC 1 cut(s) 605
Hin1II CATG 2 cut(s) 48, 1060
Hin6I GCGC 2 cut(s) 283, 685
HinP1I GCGC 2 cut(s) 283, 685
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 2 cut(s) 310, 331
HinfI GANTC 4 cut(s) 76, 104, 478, 1070
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 3 cut(s) 83, 613, 1067
HphI GGTGA 5 cut(s) 506, 602, 701, 836, 992
Hpy166II GTNNAC 3 cut(s) 268, 324, 436
Hpy188III TCNNGA 2 cut(s) 110, 1057
Hpy8I GTNNAC 3 cut(s) 268, 324, 436
HpyAV CCTTC 6 cut(s) 157, 611, 712, 847, 950, 1022
HpyCH4III ACNGT 4 cut(s) 22, 649, 740, 895
HpyCH4IV ACGT 1 cut(s) 936
HpyCH4V TGCA 3 cut(s) 324, 542, 883
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 330, 712, 1009
HpyF3I CTNAG 5 cut(s) 279, 299, 334, 701, 837
HpySE526I ACGT 1 cut(s) 936
Hsp92I GRCGYC 1 cut(s) 605
Hsp92II CATG 2 cut(s) 48, 1060
HspAI GCGC 2 cut(s) 283, 685
Ksp22I TGATCA 1 cut(s) 153
KspAI GTTAAC 1 cut(s) 436
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 4 cut(s) 195, 590, 682, 1008
LweI GCATC 1 cut(s) 870
MaeI CTAG 2 cut(s) 416, 447
MaeII ACGT 1 cut(s) 936
MaeIII GTNAC 6 cut(s) 338, 384, 494, 601, 643, 740
MalI GATC 1 cut(s) 155
MbiI CCGCTC 1 cut(s) 274
MboI GATC 1 cut(s) 153
MboII GAAGA 7 cut(s) 764, 779, 788, 791, 824, 937, 1060
MhlI GDGCHC 2 cut(s) 300, 326
MluCI AATT 5 cut(s) 91, 135, 553, 670, 1060
MlyI GAGTC 2 cut(s) 487, 1079
MseI TTAA 3 cut(s) 435, 792, 1090
MspI CCGG 3 cut(s) 83, 613, 1067
MspR9I CCNGG 3 cut(s) 84, 614, 677
MvaI CCWGG 1 cut(s) 677
MvnI CGCG 1 cut(s) 687
MwoI GCNNNNNNNGC 4 cut(s) 280, 330, 712, 1009
NciI CCSGG 2 cut(s) 84, 614
NdeII GATC 1 cut(s) 153
NlaIII CATG 2 cut(s) 48, 1060
NlaIV GGNNCC 1 cut(s) 586
NmuCI GTSAC 4 cut(s) 494, 601, 643, 740
PaeR7I CTCGAG 1 cut(s) 50
PagI TCATGA 1 cut(s) 1056
PfeI GAWTC 2 cut(s) 76, 104
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 1 cut(s) 627
PleI GAGTC 2 cut(s) 486, 1078
PpsI GAGTC 2 cut(s) 486, 1078
Psp6I CCWGG 1 cut(s) 675
PspGI CCWGG 1 cut(s) 675
PspN4I GGNNCC 1 cut(s) 586
PspXI VCTCGAGB 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 211
SaqAI TTAA 3 cut(s) 435, 792, 1090
SatI GCNGC 1 cut(s) 626
Sau3AI GATC 1 cut(s) 153
SchI GAGTC 2 cut(s) 487, 1079
ScrFI CCNGG 3 cut(s) 84, 614, 677
SduI GDGCHC 2 cut(s) 300, 326
SfaNI GCATC 1 cut(s) 870
SfcI CTRYAG 1 cut(s) 648
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 5 cut(s) 91, 135, 553, 670, 1060
SsiI CCGC 7 cut(s) 231, 272, 621, 625, 666, 680, 687
SspMI CTAG 2 cut(s) 416, 447
StyD4I CCNGG 3 cut(s) 82, 612, 675
StyI CCWWGG 1 cut(s) 1007
TaaI ACNGT 4 cut(s) 22, 649, 740, 895
TaiI ACGT 1 cut(s) 939
TaqI TCGA 3 cut(s) 51, 129, 798
TasI AATT 5 cut(s) 91, 135, 553, 670, 1060
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 2 cut(s) 76, 104
Tru1I TTAA 3 cut(s) 435, 792, 1090
Tru9I TTAA 3 cut(s) 435, 792, 1090
TscAI CASTG 5 cut(s) 25, 300, 331, 586, 652
TseFI GTSAC 4 cut(s) 494, 601, 643, 740
Tsp45I GTSAC 4 cut(s) 494, 601, 643, 740
TspDTI ATGAA 5 cut(s) 53, 717, 825, 945, 1073
TspRI CASTG 5 cut(s) 25, 300, 331, 586, 652
Van91I CCANNNNNTGG 1 cut(s) 211
VneI GTGCAC 1 cut(s) 322
XapI RAATTY 2 cut(s) 91, 553
XhoI CTCGAG 1 cut(s) 50
XspI CTAG 2 cut(s) 416, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.