Rw6G028500

Protein FANTASTIC FOUR 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013161
Physical Location & Seq
Forward (+)
52578679 .. 52579949
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028500.1

Sequence Viewer

Length: 969 bp
ATGTCTTCCACTACTGTCTGTCATCAAGAGCTTCAACCCTGTGTTGAGTCTCTTGTTAGGCTCCAATTGGTACCGCCAAGGCCTGAACTCTCCATTTCTGAACCCCAAGAAATTGGAAAATCCAGTGACAAACCTAGCTGGAGCTTCCTCCAGTCTTTCACCACCAAAATTCAGACCCCCAAAACAGAGACTGAAACAGAGAAGGTCTATGTCCACCCTCTTGTGAAACGCTCAGCTTCGGTGCTCAGCCCCAAAAGCCTGGCAATGTGCACTGAAAGCTTGGGGAGCGAGACAGGAAGCGATGCGAGCAGTGGTGACATGTCTTTTCTGCTTCAAAAGAACGACATTCCTTTGTTGTCACTTGAAGCTGAGAAAACCCAAACATTCTCTGCTACAAAACAGAGTAATGCAGAAACCCGAAAACTGAGTGACAGTGTTCAAGCACCAAAGAGATTGAATCGTAGTTTTAATGGTGGGAATAATTTTCCTCCACCTTTAACTTCTATCGGTGGCTCCAATGGTGTTCAATTTTTGCCTCACCGTGAAAGCGGCAGGCTTGTTCTTAAAGCCGTTCCTGTCACTTCTCCTGCAAACTATTTCAAAGTGGAGCGCGGCGATGGGCGGCTCAGGCTTCAGTTGTTGAGGGATATGACTCTGAATTCTGACACTAATGAGGAGGTTGAAGATGCAGAAGAAGCAGAAGATGAGGTTGTTAGAGAAGAGGAAGTGGTTGAAGAAATAATGGGAGTTGAGACTGAAACATGTCGGGAGGAAGAGGAAATGGAAGTGGAGGAAAAGAGTGGTCGCTATTGGGAAACAGAGGAGGAGGACACGGAAGGAAATAGTGGGAGTGTTGTGGGTGAAACGGGAATGGAGAAGAAGCTTCCCAGCCGTTGCAAGGAAAGCCGGCGTGGTAACAACAAAATGGTCATGAATTGGCCGCCGGAGTCGTTCTGGGTCGCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

322

Amino Acids

35.88

Weight (kDa)

4.78

Isoelectric Point (pI)

64.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 161 - 213 1.2e-18 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccII CGCG 1 cut(s) 612
AciI CCGC 5 cut(s) 74, 549, 612, 622, 941
AcoI YGGCCR 1 cut(s) 938
AcsI RAATTY 2 cut(s) 168, 658
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 898
AflIII ACRYGT 2 cut(s) 318, 761
AgsI TTSAA 9 cut(s) 35, 335, 365, 440, 457, 527, 601, 683, 734
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 7 cut(s) 31, 138, 144, 236, 279, 368, 883
AluI AGCT 7 cut(s) 31, 138, 144, 236, 279, 368, 883
Alw21I GWGCWC 2 cut(s) 246, 272
Alw26I GTCTC 4 cut(s) 54, 182, 284, 746
Alw44I GTGCAC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 2 cut(s) 80, 938
ApaLI GTGCAC 1 cut(s) 268
ApoI RAATTY 2 cut(s) 168, 658
Asp718I GGTACC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 612
AsuHPI GGTGA 4 cut(s) 151, 326, 530, 872
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 246, 272
BccI CCATC 1 cut(s) 611
BceAI ACGGC 2 cut(s) 554, 876
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 4 cut(s) 54, 182, 284, 746
BfaI CTAG 1 cut(s) 135
BisI GCNGC 4 cut(s) 550, 613, 623, 941
BlpI GCTNAGC 2 cut(s) 232, 245
BlsI GCNGC 4 cut(s) 551, 614, 624, 942
Bme1390I CCNGG 1 cut(s) 260
BmiI GGNNCC 3 cut(s) 62, 72, 514
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 292, 676
BpmI CTGGAG 2 cut(s) 134, 160
Bpu10I CCTNAGC 1 cut(s) 626
Bpu1102I GCTNAGC 2 cut(s) 232, 245
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 898
Bse118I RCCGGY 1 cut(s) 906
Bse1I ACTGG 2 cut(s) 123, 151
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 898
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 5 cut(s) 246, 259, 360, 416, 640
BseNI ACTGG 2 cut(s) 123, 151
BseRI GAGGAG 3 cut(s) 689, 836, 839
BseSI GKGCMC 1 cut(s) 272
BseYI CCCAGC 1 cut(s) 887
Bsh1236I CGCG 1 cut(s) 612
BshFI GGCC 2 cut(s) 82, 940
BshNI GGYRCC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 246, 272
BsiSI CCGG 2 cut(s) 907, 944
BslI CCNNNNNNNGG 1 cut(s) 898
BsmAI GTCTC 4 cut(s) 54, 182, 284, 746
BsnI GGCC 2 cut(s) 82, 940
Bsp1286I GDGCHC 2 cut(s) 246, 272
Bsp1720I GCTNAGC 2 cut(s) 232, 245
BspACI CCGC 5 cut(s) 74, 549, 612, 622, 941
BspANI GGCC 2 cut(s) 82, 940
BspCNI CTCAG 5 cut(s) 245, 258, 361, 417, 639
BspFNI CGCG 1 cut(s) 612
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 3 cut(s) 62, 72, 514
BspT107I GGYRCC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 906
BsrI ACTGG 2 cut(s) 123, 151
BssAI RCCGGY 1 cut(s) 906
BssECI CCNNGG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 16, 434, 542
Bst6I CTCTTC 2 cut(s) 714, 768
BstC8I GCNNGC 3 cut(s) 307, 554, 908
BstDEI CTNAG 5 cut(s) 232, 245, 369, 425, 626
BstFNI CGCG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 612
BstMAI GTCTC 4 cut(s) 54, 182, 284, 746
BstMWI GCNNNNNNNGC 7 cut(s) 255, 276, 285, 306, 628, 695, 903
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 2 cut(s) 322, 765
BstSCI CCNGG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 612
BstXI CCANNNNNNTGG 2 cut(s) 113, 259
BsuRI GGCC 2 cut(s) 82, 940
BtgZI GCGATG 2 cut(s) 315, 630
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 4 cut(s) 130, 270, 316, 439
Cac8I GCNNGC 3 cut(s) 307, 554, 908
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 930
CfoI GCGC 1 cut(s) 612
Cfr10I RCCGGY 1 cut(s) 906
Csp6I GTAC 1 cut(s) 71
CviAII CATG 3 cut(s) 319, 762, 931
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 5 cut(s) 232, 245, 369, 425, 626
EaeI YGGCCR 1 cut(s) 938
Eam1104I CTCTTC 2 cut(s) 714, 768
EarI CTCTTC 2 cut(s) 714, 768
Eco130I CCWWGG 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 3 cut(s) 322, 765, 934
FaiI YATR 5 cut(s) 210, 320, 650, 763, 932
FatI CATG 3 cut(s) 318, 761, 930
Fnu4HI GCNGC 4 cut(s) 550, 613, 623, 941
Fsp4HI GCNGC 4 cut(s) 550, 613, 623, 941
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 611
GluI GCNGC 4 cut(s) 550, 613, 623, 941
GsaI CCCAGC 1 cut(s) 891
GsuI CTGGAG 2 cut(s) 134, 160
HaeIII GGCC 2 cut(s) 82, 940
HapII CCGG 2 cut(s) 907, 944
HhaI GCGC 1 cut(s) 612
Hin1II CATG 3 cut(s) 322, 765, 934
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HindIII AAGCTT 2 cut(s) 277, 881
HinfI GANTC 4 cut(s) 47, 457, 652, 947
HpaII CCGG 2 cut(s) 907, 944
HphI GGTGA 4 cut(s) 151, 326, 530, 872
Hpy166II GTNNAC 2 cut(s) 214, 270
Hpy188I TCNGA 4 cut(s) 100, 174, 657, 664
Hpy188III TCNNGA 3 cut(s) 26, 767, 931
Hpy8I GTNNAC 2 cut(s) 214, 270
HpyAV CCTTC 2 cut(s) 196, 830
HpyCH4III ACNGT 3 cut(s) 16, 434, 542
HpyCH4V TGCA 5 cut(s) 270, 410, 590, 689, 897
HpyF10VI GCNNNNNNNGC 7 cut(s) 255, 276, 285, 306, 628, 695, 903
HpyF3I CTNAG 5 cut(s) 232, 245, 369, 425, 626
Hsp92II CATG 3 cut(s) 322, 765, 934
HspAI GCGC 1 cut(s) 610
KpnI GGTACC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 906
KroNI GCCGGC 1 cut(s) 908
LmnI GCTCC 5 cut(s) 66, 141, 285, 518, 607
LweI GCATC 2 cut(s) 292, 676
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 6 cut(s) 125, 314, 357, 428, 577, 914
MboII GAAGA 7 cut(s) 695, 704, 713, 731, 746, 785, 889
MfeI CAATTG 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 246, 272
MluCI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 934
MlyI GAGTC 3 cut(s) 56, 646, 956
MroNI GCCGGC 1 cut(s) 906
MseI TTAA 3 cut(s) 468, 497, 564
MspI CCGG 2 cut(s) 907, 944
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 7 cut(s) 255, 276, 285, 306, 628, 695, 903
NaeI GCCGGC 1 cut(s) 908
NgoMIV GCCGGC 1 cut(s) 906
NlaIII CATG 3 cut(s) 322, 765, 934
NlaIV GGNNCC 3 cut(s) 62, 72, 514
NmuCI GTSAC 5 cut(s) 125, 314, 357, 428, 577
NspI RCATGY 2 cut(s) 322, 765
PagI TCATGA 1 cut(s) 930
PceI AGGCCT 1 cut(s) 82
PciI ACATGT 2 cut(s) 318, 761
PdiI GCCGGC 1 cut(s) 908
PfeI GAWTC 1 cut(s) 457
PkrI GCNGC 4 cut(s) 551, 614, 624, 942
PleI GAGTC 3 cut(s) 55, 646, 955
PpsI GAGTC 3 cut(s) 55, 646, 955
PscI ACATGT 2 cut(s) 318, 761
Psp6I CCWGG 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 887
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 62, 72, 514
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 3 cut(s) 468, 497, 564
SatI GCNGC 4 cut(s) 550, 613, 623, 941
SchI GAGTC 3 cut(s) 56, 646, 956
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 246, 272
SfaNI GCATC 2 cut(s) 292, 676
Sse9I AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 934
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 5 cut(s) 74, 549, 612, 622, 941
SspMI CTAG 1 cut(s) 135
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 3 cut(s) 16, 434, 542
TasI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 934
TauI GCSGC 4 cut(s) 552, 615, 625, 943
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 3 cut(s) 468, 497, 564
Tru9I TTAA 3 cut(s) 468, 497, 564
TscAI CASTG 4 cut(s) 130, 277, 316, 439
TseFI GTSAC 5 cut(s) 125, 314, 357, 428, 577
Tsp45I GTSAC 5 cut(s) 125, 314, 357, 428, 577
TspDTI ATGAA 1 cut(s) 947
TspGWI ACGGA 1 cut(s) 848
TspRI CASTG 4 cut(s) 130, 277, 316, 439
VneI GTGCAC 1 cut(s) 268
XapI RAATTY 2 cut(s) 168, 658
XceI RCATGY 2 cut(s) 322, 765
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.