MD11G1286200.v1.1

Protein FANTASTIC FOUR 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013161
Physical Location & Seq
Forward (+)
40556051 .. 40557148
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1286200.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGTCTTCAACATCAAGCACTGTCTGTCATCAAGTGCTGAAATCATGCCTCGAGCCTCTTGTTCGCCTCAAACTGAATCAACCGGGGTCAAATTTCCTCCCCGAATCTCCAGAGAAAACATCCCACCTCGAAAAAATCGATAACTTGAACTTGATTAACAAGAAGGACAACAAGGAAGTTGAAGTAGCTGGCTGGAGCTTCCTCCAGTCTGTGGCCAACCAAACTCAAACCGCCAAAAGCAAAAGCGAAGCGGAGAAAGTCTATGTCCACCCGCTCGTTAAGTGCTCTGCTTCAGTGCTCAGTCCAAGAAGCTTGGAAATGTGCACTGAAAGCTTAGGTAACGAGACGGGTAGCGAAAATGGTGGCGACAAGCTCTCTCTTTTGTTACACAAGATTGAAAGTCCTTTGCTCTCACTAGGAAGTAGTGGGGAGGTTAACCCTAACCCTATATGTTCTACTACTACTATTACAACAAGTGAGAGTCCAAAAATATTGAGTGACAACAATGTTCAAGCTACACCAAAGAGATTGAAAAGTGGTAGTGCAACTACTACAAATTTCCCTCCTCCTTTGACATCTATCAGTGGCTCCAATGGTGTCCAAGTGATGCCTCACCGGGAAGGCGGCCGGCTGATTTTGAAAGCCGTCACTGTTGTCTCCCCTCCCACCGCCAATTTCCAGGCGGAACGTGGTGATGGGAGGCTCAGGCTTACATTGCTGAAGGACATTTCATCCCCAAACTGTGACGTTATTGAAGAAGTTGGGCTTGAAGAAGTTGAAGAAGATGACGAGTTTCAAATCAAGGCGAAAAACGAAGAAAATGGTGGTGAAGTTGAAGCTGAGGAGATTGATGGGAACGTTGAAAATGTTGAAACAGAGGAGATGCAGGGGGATACTGTAAGTGTTGAAACAGAGGAGGTGGAGGGGAAGAATGAACAAGTTGTTGAAAATGAGGATATGGAGGGGAATAGTGGAAATGTTGGGGGTGAAAAGGGGATGGAAAAGAAGCTCCCAAGGCCAAGCAGATGTAAAGAAGGTGGGCGTGGAAACAAGAAGATGGTCATGAATTGGCCGGAGTCCTTTTGGGTTGCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

366

Amino Acids

39.56

Weight (kDa)

4.83

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 186 - 239 4.5e-18 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 274
AciI CCGC 6 cut(s) 231, 251, 272, 624, 669, 683
AclI AACGTT 1 cut(s) 858
AcoI YGGCCR 3 cut(s) 213, 625, 1070
AcsI RAATTY 2 cut(s) 91, 556
AcuI CTGAAG 2 cut(s) 276, 740
AfiI CCNNNNNNNGG 1 cut(s) 211
AjnI CCWGG 1 cut(s) 678
AluBI AGCT 8 cut(s) 188, 198, 312, 333, 373, 515, 839, 1009
AluI AGCT 8 cut(s) 188, 198, 312, 333, 373, 515, 839, 1009
Alw21I GWGCWC 3 cut(s) 287, 300, 326
Alw26I GTCTC 2 cut(s) 338, 661
Alw44I GTGCAC 1 cut(s) 322
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 4 cut(s) 213, 625, 1016, 1070
ApaLI GTGCAC 1 cut(s) 322
ApoI RAATTY 2 cut(s) 91, 556
AsuC2I CCSGG 2 cut(s) 84, 617
AsuHPI GGTGA 4 cut(s) 605, 704, 839, 998
AvaI CYCGRG 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 326
BalI TGGCCA 1 cut(s) 215
Bbv12I GWGCWC 3 cut(s) 287, 300, 326
BbvCI CCTCAGC 1 cut(s) 840
BccI CCATC 4 cut(s) 689, 845, 991, 1051
BceAI ACGGC 1 cut(s) 629
BciT130I CCWGG 1 cut(s) 680
BciVI GTATCC 1 cut(s) 886
BcnI CCSGG 2 cut(s) 84, 617
BcoDI GTCTC 2 cut(s) 338, 661
BfaI CTAG 1 cut(s) 416
BfuI GTATCC 1 cut(s) 886
BisI GCNGC 1 cut(s) 625
BlsI GCNGC 1 cut(s) 626
Bme1390I CCNGG 3 cut(s) 84, 617, 680
BmeT110I CYCGRG 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 589
BmrFI CCNGG 3 cut(s) 84, 617, 680
BmsI GCATC 2 cut(s) 597, 873
BpmI CTGGAG 3 cut(s) 93, 188, 214
Bpu10I CCTNAGC 3 cut(s) 334, 704, 840
BpuMI CCSGG 2 cut(s) 84, 617
Bsa29I ATCGAT 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 83, 1013
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse118I RCCGGY 1 cut(s) 627
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 713
BseBI CCWGG 1 cut(s) 680
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 83, 1013
BseGI GGATG 3 cut(s) 119, 731, 1002
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 713
BseMII CTCAG 3 cut(s) 313, 718, 831
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 4 cut(s) 555, 857, 893, 929
BseSI GKGCMC 1 cut(s) 326
BseX3I CGGCCG 1 cut(s) 625
Bsh1285I CGRYCG 1 cut(s) 628
BshFI GGCC 4 cut(s) 215, 627, 1018, 1072
BshVI ATCGAT 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 628
BsiHKAI GWGCWC 3 cut(s) 287, 300, 326
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 4 cut(s) 83, 616, 628, 1073
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 2 cut(s) 338, 661
BsmBI CGTCTC 1 cut(s) 338
BsnI GGCC 4 cut(s) 215, 627, 1018, 1072
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 3 cut(s) 287, 300, 326
BspACI CCGC 6 cut(s) 231, 251, 272, 624, 669, 683
BspANI GGCC 4 cut(s) 215, 627, 1018, 1072
BspCNI CTCAG 3 cut(s) 312, 717, 832
BspDI ATCGAT 1 cut(s) 138
BspHI TCATGA 1 cut(s) 1062
BspLI GGNNCC 1 cut(s) 589
BsrBI CCGCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 713
BsrFI RCCGGY 1 cut(s) 627
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 627
BssECI CCNNGG 2 cut(s) 83, 1013
BssT1I CCWWGG 1 cut(s) 1013
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 4 cut(s) 22, 652, 743, 898
BstC8I GCNNGC 2 cut(s) 190, 629
BstDEI CTNAG 4 cut(s) 299, 334, 704, 840
BstF5I GGATG 3 cut(s) 119, 731, 1002
BstMAI GTCTC 2 cut(s) 338, 661
BstMCI CGRYCG 1 cut(s) 628
BstMWI GCNNNNNNNGC 3 cut(s) 330, 715, 1015
BstNI CCWGG 1 cut(s) 680
BstSCI CCNGG 3 cut(s) 82, 615, 678
BstSLI GKGCMC 1 cut(s) 326
BstZI CGGCCG 1 cut(s) 625
Bsu15I ATCGAT 1 cut(s) 138
BsuI GTATCC 1 cut(s) 886
BsuRI GGCC 4 cut(s) 215, 627, 1018, 1072
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 3 cut(s) 119, 731, 1002
BtsIMutI CAGTG 5 cut(s) 18, 300, 324, 589, 648
Cac8I GCNNGC 2 cut(s) 190, 629
CciI TCATGA 1 cut(s) 1062
Cfr10I RCCGGY 1 cut(s) 627
ClaI ATCGAT 1 cut(s) 138
CviAII CATG 2 cut(s) 45, 1063
DdeI CTNAG 4 cut(s) 299, 334, 704, 840
EaeI YGGCCR 3 cut(s) 213, 625, 1070
EagI CGGCCG 1 cut(s) 625
EciI GGCGGA 1 cut(s) 698
EclXI CGGCCG 1 cut(s) 625
Eco130I CCWWGG 1 cut(s) 1013
Eco52I CGGCCG 1 cut(s) 625
Eco57I CTGAAG 2 cut(s) 276, 740
Eco88I CYCGRG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 678
EcoT14I CCWWGG 1 cut(s) 1013
ErhI CCWWGG 1 cut(s) 1013
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 2 cut(s) 48, 1066
FaiI YATR 6 cut(s) 46, 264, 449, 451, 959, 1064
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FatI CATG 2 cut(s) 44, 1062
FauI CCCGC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 625
FokI GGATG 3 cut(s) 106, 718, 1009
Fsp4HI GCNGC 1 cut(s) 625
FspBI CTAG 1 cut(s) 416
GluI GCNGC 1 cut(s) 625
GsuI CTGGAG 3 cut(s) 93, 188, 214
HaeIII GGCC 4 cut(s) 215, 627, 1018, 1072
HapII CCGG 4 cut(s) 83, 616, 628, 1073
Hin1II CATG 2 cut(s) 48, 1066
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 2 cut(s) 310, 331
HinfI GANTC 4 cut(s) 76, 104, 481, 1076
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 4 cut(s) 83, 616, 628, 1073
HphI GGTGA 4 cut(s) 605, 704, 839, 998
Hpy166II GTNNAC 3 cut(s) 268, 324, 436
Hpy188III TCNNGA 2 cut(s) 110, 1063
Hpy8I GTNNAC 3 cut(s) 268, 324, 436
HpyAV CCTTC 4 cut(s) 157, 614, 715, 1028
HpyCH4III ACNGT 4 cut(s) 22, 652, 743, 898
HpyCH4IV ACGT 3 cut(s) 688, 747, 858
HpyCH4V TGCA 3 cut(s) 324, 545, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 330, 715, 1015
HpyF3I CTNAG 4 cut(s) 299, 334, 704, 840
HpySE526I ACGT 3 cut(s) 688, 747, 858
Hsp92II CATG 2 cut(s) 48, 1066
KroI GCCGGC 1 cut(s) 627
KroNI GCCGGC 1 cut(s) 629
KspAI GTTAAC 1 cut(s) 436
LmnI GCTCC 3 cut(s) 195, 593, 1014
LweI GCATC 2 cut(s) 597, 873
MaeI CTAG 1 cut(s) 416
MaeII ACGT 3 cut(s) 688, 747, 858
MaeIII GTNAC 5 cut(s) 338, 384, 497, 646, 743
MbiI CCGCTC 1 cut(s) 274
MboII GAAGA 7 cut(s) 767, 782, 791, 794, 827, 940, 1066
MhlI GDGCHC 3 cut(s) 287, 300, 326
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 4 cut(s) 91, 556, 673, 1066
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 2 cut(s) 490, 1085
Mox20I TGGCCA 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 627
MscI TGGCCA 1 cut(s) 215
MseI TTAA 4 cut(s) 156, 279, 435, 1096
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 4 cut(s) 83, 616, 628, 1073
MspR9I CCNGG 3 cut(s) 84, 617, 680
MvaI CCWGG 1 cut(s) 680
MwoI GCNNNNNNNGC 3 cut(s) 330, 715, 1015
NaeI GCCGGC 1 cut(s) 629
NciI CCSGG 2 cut(s) 84, 617
NgoMIV GCCGGC 1 cut(s) 627
NlaIII CATG 2 cut(s) 48, 1066
NlaIV GGNNCC 1 cut(s) 589
NmuCI GTSAC 3 cut(s) 497, 646, 743
PaeR7I CTCGAG 1 cut(s) 50
PagI TCATGA 1 cut(s) 1062
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 629
PfeI GAWTC 2 cut(s) 76, 104
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 1 cut(s) 626
PleI GAGTC 2 cut(s) 489, 1084
PpsI GAGTC 2 cut(s) 489, 1084
Psp1406I AACGTT 1 cut(s) 858
Psp6I CCWGG 1 cut(s) 678
PspGI CCWGG 1 cut(s) 678
PspN4I GGNNCC 1 cut(s) 589
PspXI VCTCGAGB 1 cut(s) 50
SaqAI TTAA 4 cut(s) 156, 279, 435, 1096
SatI GCNGC 1 cut(s) 625
SchI GAGTC 2 cut(s) 490, 1085
ScrFI CCNGG 3 cut(s) 84, 617, 680
SduI GDGCHC 3 cut(s) 287, 300, 326
SfaNI GCATC 2 cut(s) 597, 873
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 4 cut(s) 91, 556, 673, 1066
SsiI CCGC 6 cut(s) 231, 251, 272, 624, 669, 683
SspI AATATT 1 cut(s) 492
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 3 cut(s) 82, 615, 678
StyI CCWWGG 1 cut(s) 1013
TaaI ACNGT 4 cut(s) 22, 652, 743, 898
TaiI ACGT 3 cut(s) 691, 750, 861
TaqI TCGA 3 cut(s) 51, 129, 138
TasI AATT 4 cut(s) 91, 556, 673, 1066
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 2 cut(s) 76, 104
Tru1I TTAA 4 cut(s) 156, 279, 435, 1096
Tru9I TTAA 4 cut(s) 156, 279, 435, 1096
TscAI CASTG 5 cut(s) 25, 300, 331, 589, 655
TseFI GTSAC 3 cut(s) 497, 646, 743
Tsp45I GTSAC 3 cut(s) 497, 646, 743
TspDTI ATGAA 3 cut(s) 720, 948, 1079
TspRI CASTG 5 cut(s) 25, 300, 331, 589, 655
Van91I CCANNNNNTGG 1 cut(s) 211
VneI GTGCAC 1 cut(s) 322
XapI RAATTY 2 cut(s) 91, 556
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XhoI CTCGAG 1 cut(s) 50
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.