FvH4_2g23620

Protein FANTASTIC FOUR 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013161
Physical Location & Seq
Forward (+)
19326641 .. 19328148
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23620.t1

Sequence Viewer

Length: 963 bp
ATGTCTTCAACTACTGTCTGTCATCAAGAGCTTCAACCCTGTGTTGAGTCTCTTGTTAGGCTCCAATTGGTTCCACCAAAGCCGACAGTTGATCCCCCCGTTCCTGAACCTCAGGAAATCGGAAACACCAGTGACAAAGCTAGCTGGAGCTTCCTCCAGTCTTTCACCACCACCATTGAGACCCCCAAAACAGAGACGGTCTATGTCCACCCTCTTATGAAACGCTCGGCTTCTGTGCTCAGCCCCAGAAGCCTGGCAATGTGCACTGAAAGCTTGGGCAGCGAGACCGGAAGCGATGTGAGCAGTGATGACATGTCTTTTCTGCTTCAAAACAATGACATTCCTTTGCTCTCACTTGAGATTGAGAAAACCTCAACATTCTCTGCTGCAAAACAGAGTAGTACTGTAGAAACCCCAAAACCAAAGAGATTAATTCGTAGTGTTAATGGTGGGAGTAACTTTCCTCCACCTCTAACTTCTATCAGTGGCTCCAACGGTGTTCAATTTTTGCCTCACCGTGAAGGCGGTAGGCTTGTTCTGAAAGCCGTTCCTGTCACTTCTCCTGTAAACTACCTTGAAGCAGAGCGCGGCGATGGGCGGCTCAGGCTTCGCTTGTTGAGGGATATGCCTCTAGATTCTGATATGGATGAGGAGGTTGAAGAAGAAGAAGATGAGGTTGTGAAAGAAGAGGAAGTGGTTGAAGAGATAATGGAAGTTGAGACAGAAACATGTTGGGAGGAAGAGGAAGAGGAAATGGAAGTGGAAGTGGAAGTGGAAGTGGAGGAGAAGAGTGGTGGCTATTGGGAAACAGAGGAGGAGGAGGACATGGAAGGGAATAGTGGGGTTGTTGTGGGTGAAACGGGAATGGAAAAGAAGCTTCCAAGCCGGTGCAAGGAGAACCGGCGTGGTAACAACAAAATGGTCATGAATTGGCCGCCGGAGTCGATTTGGGTCTCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

321

Amino Acids

35.72

Weight (kDa)

4.4

Isoelectric Point (pI)

74.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 153 - 205 2.9e-19 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 588
AciI CCGC 4 cut(s) 525, 588, 598, 935
AclWI GGATC 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 932
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 1 cut(s) 892
AflIII ACRYGT 2 cut(s) 312, 728
AgsI TTSAA 7 cut(s) 9, 35, 329, 503, 578, 659, 701
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 6 cut(s) 31, 140, 144, 150, 273, 877
AluI AGCT 6 cut(s) 31, 140, 144, 150, 273, 877
Alw21I GWGCWC 2 cut(s) 240, 266
Alw26I GTCTC 6 cut(s) 54, 173, 188, 278, 713, 958
Alw44I GTGCAC 1 cut(s) 262
AlwI GGATC 1 cut(s) 86
AoxI GGCC 1 cut(s) 932
ApaLI GTGCAC 1 cut(s) 262
ApeKI GCWGC 2 cut(s) 279, 386
AseI ATTAAT 1 cut(s) 431
AspLEI GCGC 1 cut(s) 588
AsuHPI GGTGA 3 cut(s) 157, 506, 866
AsuNHI GCTAGC 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 266
Bbv12I GWGCWC 2 cut(s) 240, 266
BbvI GCAGC 2 cut(s) 291, 373
BccI CCATC 1 cut(s) 587
BceAI ACGGC 1 cut(s) 530
BciT130I CCWGG 1 cut(s) 254
BcoDI GTCTC 6 cut(s) 54, 173, 188, 278, 713, 958
BfaI CTAG 2 cut(s) 141, 632
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 5 cut(s) 280, 387, 589, 599, 935
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 5 cut(s) 281, 388, 590, 600, 936
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 254
BmiI GGNNCC 3 cut(s) 62, 72, 490
BmrFI CCNGG 1 cut(s) 254
BmtI GCTAGC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 2 cut(s) 140, 166
Bpu10I CCTNAGC 1 cut(s) 602
Bpu1102I GCTNAGC 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 377
BsaI GGTCTC 3 cut(s) 173, 278, 958
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 892
Bse118I RCCGGY 2 cut(s) 885, 900
Bse1I ACTGG 2 cut(s) 129, 157
Bse21I CCTNAGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 652
BseLI CCNNNNNNNGG 1 cut(s) 892
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 3 cut(s) 125, 253, 616
BseNI ACTGG 2 cut(s) 129, 157
BseRI GAGGAG 5 cut(s) 665, 797, 827, 830, 833
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 2 cut(s) 291, 373
Bsh1236I CGCG 1 cut(s) 588
BshFI GGCC 1 cut(s) 934
BsiHKAI GWGCWC 2 cut(s) 240, 266
BsiSI CCGG 4 cut(s) 288, 886, 901, 938
BslI CCNNNNNNNGG 1 cut(s) 892
BsmAI GTCTC 6 cut(s) 54, 173, 188, 278, 713, 958
BsmBI CGTCTC 1 cut(s) 188
BsnI GGCC 1 cut(s) 934
Bso31I GGTCTC 3 cut(s) 173, 278, 958
Bsp1286I GDGCHC 2 cut(s) 240, 266
Bsp143I GATC 1 cut(s) 91
Bsp1720I GCTNAGC 1 cut(s) 239
BspACI CCGC 4 cut(s) 525, 588, 598, 935
BspANI GGCC 1 cut(s) 934
BspCNI CTCAG 3 cut(s) 124, 252, 615
BspFNI CGCG 1 cut(s) 588
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 3 cut(s) 62, 72, 490
BspOI GCTAGC 1 cut(s) 144
BspPI GGATC 1 cut(s) 86
BspTNI GGTCTC 3 cut(s) 173, 278, 958
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 2 cut(s) 885, 900
BsrI ACTGG 2 cut(s) 129, 157
BssAI RCCGGY 2 cut(s) 885, 900
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 6 cut(s) 16, 88, 199, 406, 497, 518
Bst6I CTCTTC 5 cut(s) 681, 696, 735, 741, 782
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 111, 239, 602
BstF5I GGATG 1 cut(s) 652
BstFNI CGCG 1 cut(s) 588
BstHHI GCGC 1 cut(s) 588
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 6 cut(s) 54, 173, 188, 278, 713, 958
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 5 cut(s) 249, 270, 279, 300, 604
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 2 cut(s) 316, 732
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 266
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 2 cut(s) 291, 373
BstXI CCANNNNNNTGG 1 cut(s) 253
Bsu36I CCTNAGG 1 cut(s) 111
BsuRI GGCC 1 cut(s) 934
BtgZI GCGATG 2 cut(s) 309, 606
BtsCI GGATG 1 cut(s) 652
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 4 cut(s) 136, 264, 310, 490
Cac8I GCNNGC 1 cut(s) 142
CciI TCATGA 1 cut(s) 924
CfoI GCGC 1 cut(s) 588
Cfr10I RCCGGY 2 cut(s) 885, 900
Csp6I GTAC 1 cut(s) 402
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 4 cut(s) 313, 729, 826, 925
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 3 cut(s) 111, 239, 602
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 932
Eam1104I CTCTTC 5 cut(s) 681, 696, 735, 741, 782
EarI CTCTTC 5 cut(s) 681, 696, 735, 741, 782
Eco31I GGTCTC 3 cut(s) 173, 278, 958
Eco81I CCTNAGG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 4 cut(s) 316, 732, 829, 928
FaiI YATR 8 cut(s) 204, 218, 314, 626, 644, 730, 827, 926
FatI CATG 4 cut(s) 312, 728, 825, 924
Fnu4HI GCNGC 5 cut(s) 280, 387, 589, 599, 935
FokI GGATG 1 cut(s) 659
Fsp4HI GCNGC 5 cut(s) 280, 387, 589, 599, 935
FspBI CTAG 2 cut(s) 141, 632
GlaI GCGC 1 cut(s) 587
GluI GCNGC 5 cut(s) 280, 387, 589, 599, 935
GsuI CTGGAG 2 cut(s) 140, 166
HaeIII GGCC 1 cut(s) 934
HapII CCGG 4 cut(s) 288, 886, 901, 938
HhaI GCGC 1 cut(s) 588
Hin1II CATG 4 cut(s) 316, 732, 829, 928
Hin6I GCGC 1 cut(s) 586
HinP1I GCGC 1 cut(s) 586
HindIII AAGCTT 2 cut(s) 271, 875
HinfI GANTC 3 cut(s) 47, 635, 941
HpaII CCGG 4 cut(s) 288, 886, 901, 938
HphI GGTGA 3 cut(s) 157, 506, 866
Hpy166II GTNNAC 3 cut(s) 208, 264, 568
Hpy188I TCNGA 3 cut(s) 122, 540, 640
Hpy188III TCNNGA 5 cut(s) 26, 104, 113, 632, 925
Hpy8I GTNNAC 3 cut(s) 208, 264, 568
HpyAV CCTTC 2 cut(s) 515, 824
HpyCH4III ACNGT 6 cut(s) 16, 88, 199, 406, 497, 518
HpyCH4V TGCA 3 cut(s) 264, 389, 891
HpyF10VI GCNNNNNNNGC 5 cut(s) 249, 270, 279, 300, 604
HpyF3I CTNAG 3 cut(s) 111, 239, 602
Hsp92II CATG 4 cut(s) 316, 732, 829, 928
HspAI GCGC 1 cut(s) 586
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 3 cut(s) 66, 147, 494
Lsp1109I GCAGC 2 cut(s) 291, 373
MaeI CTAG 2 cut(s) 141, 632
MaeIII GTNAC 4 cut(s) 131, 455, 553, 908
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 9 cut(s) 671, 674, 677, 680, 698, 713, 752, 758, 799
MfeI CAATTG 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 240, 266
MluCI AATT 4 cut(s) 65, 432, 503, 928
MlyI GAGTC 2 cut(s) 56, 950
MmeI TCCRAC 1 cut(s) 516
MseI TTAA 2 cut(s) 431, 444
MspI CCGG 4 cut(s) 288, 886, 901, 938
MspR9I CCNGG 1 cut(s) 254
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 588
MwoI GCNNNNNNNGC 5 cut(s) 249, 270, 279, 300, 604
NdeII GATC 1 cut(s) 91
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 4 cut(s) 316, 732, 829, 928
NlaIV GGNNCC 3 cut(s) 62, 72, 490
NmeAIII GCCGAG 1 cut(s) 206
NmuCI GTSAC 2 cut(s) 131, 553
NspI RCATGY 2 cut(s) 316, 732
PagI TCATGA 1 cut(s) 924
PciI ACATGT 2 cut(s) 312, 728
PfeI GAWTC 1 cut(s) 635
PkrI GCNGC 5 cut(s) 281, 388, 590, 600, 936
PleI GAGTC 2 cut(s) 55, 949
PpsI GAGTC 2 cut(s) 55, 949
PscI ACATGT 2 cut(s) 312, 728
PshBI ATTAAT 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 3 cut(s) 62, 72, 490
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 431, 444
SatI GCNGC 5 cut(s) 280, 387, 589, 599, 935
Sau3AI GATC 1 cut(s) 91
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 2 cut(s) 56, 950
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 2 cut(s) 240, 266
SfcI CTRYAG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 65, 432, 503, 928
SsiI CCGC 4 cut(s) 525, 588, 598, 935
SspMI CTAG 2 cut(s) 141, 632
StyD4I CCNGG 1 cut(s) 252
TaaI ACNGT 6 cut(s) 16, 88, 199, 406, 497, 518
TaqI TCGA 1 cut(s) 944
TasI AATT 4 cut(s) 65, 432, 503, 928
TatI WGTACW 1 cut(s) 401
TauI GCSGC 3 cut(s) 591, 601, 937
TfiI GAWTC 1 cut(s) 635
Tru1I TTAA 2 cut(s) 431, 444
Tru9I TTAA 2 cut(s) 431, 444
TscAI CASTG 4 cut(s) 136, 271, 310, 490
TseFI GTSAC 2 cut(s) 131, 553
TseI GCWGC 2 cut(s) 279, 386
Tsp45I GTSAC 2 cut(s) 131, 553
TspDTI ATGAA 2 cut(s) 233, 941
TspRI CASTG 4 cut(s) 136, 271, 310, 490
VneI GTGCAC 1 cut(s) 262
VspI ATTAAT 1 cut(s) 431
XbaI TCTAGA 1 cut(s) 631
XceI RCATGY 2 cut(s) 316, 732
XspI CTAG 2 cut(s) 141, 632
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.