Rroxscaffold_7G00176390

Protein FANTASTIC FOUR 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013161
Physical Location & Seq
Reverse (-)
15864817 .. 15866186
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176390.1

Sequence Viewer

Length: 975 bp
ATGTCTTCCACTACTGTCTGTCATCAAGAGCTTCAACCCTGTGTTGAGTCTCCTGTTAGGCTCCAATTGGTACCGCTAAGGTCTAAACTCTCCATTTCTGAACCCCAAGAAATTGGAAAATCCAGTGACAAACCTAGCTGGAGCTTCCTCCAGTCTTTCACCACCACAATTCAGACCCCCAAAACAGAGAATGAAACAGAGAAGGTCTATGTCCACCCTCTTGTGAAACGCTCAGCTTCGGTGCTCAGCCCCAAAAGCCTGGCAATGTGCACTGAAAGCTTGGGCAGCGAGACGGGAAGCGATGCGAGCAGTGGTGACATGTCTTTTCTGCTTCAAAAGAACGACATTCCTTTGTTGTCACTTGAAGCTGAGAAAACCGAAACATTCTCTGCTACAAAACAGAGTAATGTAGAAACCCGAAAACTGAGTGACAGTGTTCAAGCACCAAAGAGATTGAATCGTAGTGTTAATGGTGGAAATAATTTTCCTCCACCTTTAACTTCTATCGGTGGCTCCAATGGTGTTCAATTTTTGCCTCACCGTGAAGGCGGCAGGCTTGTTCTGAAAGCCGTTCCTGTCACTTCTCCTGCAAACTATTTCAAAGTGGAGCGCGGCGATGGGCGGCTCAGGCTTCAGTTGTTGAGGGATATGACTCTGAATTCTGACACTGATGAGGAGGTTGAAGATGCAGAAGAAGAAGAAGAAGATGAGGTTGTTAGAGAAGAGGAAGTGGTTGAAGAAATAATGGGAGTTGAGACTGAAACATGTCGGGAGGAAGAAGAGGAAATGGAAGTGGAGGAAAAGAGTGGTGGCTATTGGGAAACAGAGGAGGTGGACACGGAAGGAAATAGTGGGTGTGTTGTGGGTGAAACGGGAATGGAGAAGAAGCTTCCTAGCCGTTGCAAGGAAAGCCGGCGTGGTAACAACAAAATGGTCATGAATTGGCCGCCGGAGTCGTTCTGGGTTGCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

324

Amino Acids

36.01

Weight (kDa)

4.67

Isoelectric Point (pI)

69.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 161 - 213 3.8e-19 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccII CGCG 1 cut(s) 612
AciI CCGC 5 cut(s) 74, 549, 612, 622, 947
AcoI YGGCCR 1 cut(s) 944
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 904
AflIII ACRYGT 2 cut(s) 318, 764
AgsI TTSAA 9 cut(s) 35, 335, 365, 440, 457, 527, 601, 683, 737
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 7 cut(s) 31, 138, 144, 236, 279, 368, 889
AluI AGCT 7 cut(s) 31, 138, 144, 236, 279, 368, 889
Alw21I GWGCWC 2 cut(s) 246, 272
Alw26I GTCTC 3 cut(s) 54, 284, 749
Alw44I GTGCAC 1 cut(s) 268
AoxI GGCC 1 cut(s) 944
ApaLI GTGCAC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 658
Asp718I GGTACC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 612
AsuHPI GGTGA 4 cut(s) 151, 326, 530, 878
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 246, 272
BbvI GCAGC 1 cut(s) 297
BccI CCATC 1 cut(s) 611
BceAI ACGGC 2 cut(s) 554, 882
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 3 cut(s) 54, 284, 749
BfaI CTAG 2 cut(s) 135, 894
BisI GCNGC 5 cut(s) 286, 550, 613, 623, 947
BlpI GCTNAGC 2 cut(s) 232, 245
BlsI GCNGC 5 cut(s) 287, 551, 614, 624, 948
Bme1390I CCNGG 1 cut(s) 260
BmiI GGNNCC 3 cut(s) 62, 72, 514
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 292, 676
BpmI CTGGAG 2 cut(s) 134, 160
Bpu10I CCTNAGC 2 cut(s) 77, 626
Bpu1102I GCTNAGC 2 cut(s) 232, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 904
Bse118I RCCGGY 1 cut(s) 912
Bse1I ACTGG 2 cut(s) 123, 151
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 904
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 5 cut(s) 246, 259, 360, 416, 640
BseNI ACTGG 2 cut(s) 123, 151
BseRI GAGGAG 2 cut(s) 689, 842
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 612
BshFI GGCC 1 cut(s) 946
BshNI GGYRCC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 246, 272
BsiSI CCGG 2 cut(s) 913, 950
BslI CCNNNNNNNGG 1 cut(s) 904
BsmAI GTCTC 3 cut(s) 54, 284, 749
BsmBI CGTCTC 1 cut(s) 284
BsnI GGCC 1 cut(s) 946
Bsp1286I GDGCHC 2 cut(s) 246, 272
Bsp1720I GCTNAGC 2 cut(s) 232, 245
BspACI CCGC 5 cut(s) 74, 549, 612, 622, 947
BspANI GGCC 1 cut(s) 946
BspCNI CTCAG 5 cut(s) 245, 258, 361, 417, 639
BspFNI CGCG 1 cut(s) 612
BspHI TCATGA 1 cut(s) 936
BspLI GGNNCC 3 cut(s) 62, 72, 514
BspT107I GGYRCC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 912
BsrI ACTGG 2 cut(s) 123, 151
BssAI RCCGGY 1 cut(s) 912
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 16, 434, 542
Bst6I CTCTTC 2 cut(s) 717, 774
BstC8I GCNNGC 3 cut(s) 307, 554, 914
BstDEI CTNAG 6 cut(s) 77, 232, 245, 369, 425, 626
BstFNI CGCG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 612
BstMAI GTCTC 3 cut(s) 54, 284, 749
BstMWI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 909
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 2 cut(s) 322, 768
BstSCI CCNGG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 1 cut(s) 297
BstXI CCANNNNNNTGG 2 cut(s) 113, 259
BsuRI GGCC 1 cut(s) 946
BtgZI GCGATG 2 cut(s) 315, 630
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 5 cut(s) 130, 270, 316, 439, 666
Cac8I GCNNGC 3 cut(s) 307, 554, 914
CciI TCATGA 1 cut(s) 936
CfoI GCGC 1 cut(s) 612
Cfr10I RCCGGY 1 cut(s) 912
Csp6I GTAC 1 cut(s) 71
CviAII CATG 3 cut(s) 319, 765, 937
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 6 cut(s) 77, 232, 245, 369, 425, 626
EaeI YGGCCR 1 cut(s) 944
Eam1104I CTCTTC 2 cut(s) 717, 774
EarI CTCTTC 2 cut(s) 717, 774
Eco57I CTGAAG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 3 cut(s) 322, 768, 940
FaiI YATR 5 cut(s) 210, 320, 650, 766, 938
FatI CATG 3 cut(s) 318, 764, 936
Fnu4HI GCNGC 5 cut(s) 286, 550, 613, 623, 947
Fsp4HI GCNGC 5 cut(s) 286, 550, 613, 623, 947
FspBI CTAG 2 cut(s) 135, 894
GlaI GCGC 1 cut(s) 611
GluI GCNGC 5 cut(s) 286, 550, 613, 623, 947
GsuI CTGGAG 2 cut(s) 134, 160
HaeIII GGCC 1 cut(s) 946
HapII CCGG 2 cut(s) 913, 950
HhaI GCGC 1 cut(s) 612
Hin1II CATG 3 cut(s) 322, 768, 940
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HindIII AAGCTT 2 cut(s) 277, 887
HinfI GANTC 4 cut(s) 47, 457, 652, 953
HpaII CCGG 2 cut(s) 913, 950
HphI GGTGA 4 cut(s) 151, 326, 530, 878
Hpy166II GTNNAC 3 cut(s) 214, 270, 835
Hpy188I TCNGA 5 cut(s) 100, 174, 564, 657, 664
Hpy188III TCNNGA 3 cut(s) 26, 770, 937
Hpy8I GTNNAC 3 cut(s) 214, 270, 835
HpyAV CCTTC 3 cut(s) 196, 539, 836
HpyCH4III ACNGT 3 cut(s) 16, 434, 542
HpyCH4V TGCA 4 cut(s) 270, 590, 689, 903
HpyF10VI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 909
HpyF3I CTNAG 6 cut(s) 77, 232, 245, 369, 425, 626
Hsp92II CATG 3 cut(s) 322, 768, 940
HspAI GCGC 1 cut(s) 610
KpnI GGTACC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 912
KroNI GCCGGC 1 cut(s) 914
LmnI GCTCC 4 cut(s) 66, 141, 518, 607
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 292, 676
MaeI CTAG 2 cut(s) 135, 894
MaeIII GTNAC 6 cut(s) 125, 314, 357, 428, 577, 920
MfeI CAATTG 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 246, 272
MluCI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 940
MlyI GAGTC 3 cut(s) 56, 646, 962
MroNI GCCGGC 1 cut(s) 912
MseI TTAA 2 cut(s) 468, 497
MspI CCGG 2 cut(s) 913, 950
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 909
NaeI GCCGGC 1 cut(s) 914
NgoMIV GCCGGC 1 cut(s) 912
NlaIII CATG 3 cut(s) 322, 768, 940
NlaIV GGNNCC 3 cut(s) 62, 72, 514
NmuCI GTSAC 5 cut(s) 125, 314, 357, 428, 577
NspI RCATGY 2 cut(s) 322, 768
PagI TCATGA 1 cut(s) 936
PciI ACATGT 2 cut(s) 318, 764
PdiI GCCGGC 1 cut(s) 914
PfeI GAWTC 1 cut(s) 457
PkrI GCNGC 5 cut(s) 287, 551, 614, 624, 948
PleI GAGTC 3 cut(s) 55, 646, 961
PpsI GAGTC 3 cut(s) 55, 646, 961
PscI ACATGT 2 cut(s) 318, 764
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 62, 72, 514
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 468, 497
SatI GCNGC 5 cut(s) 286, 550, 613, 623, 947
SchI GAGTC 3 cut(s) 56, 646, 962
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 246, 272
SfaNI GCATC 2 cut(s) 292, 676
Sse9I AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 940
SsiI CCGC 5 cut(s) 74, 549, 612, 622, 947
SspMI CTAG 2 cut(s) 135, 894
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 3 cut(s) 16, 434, 542
TasI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 940
TauI GCSGC 4 cut(s) 552, 615, 625, 949
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 2 cut(s) 468, 497
Tru9I TTAA 2 cut(s) 468, 497
TscAI CASTG 5 cut(s) 130, 277, 316, 439, 673
TseFI GTSAC 5 cut(s) 125, 314, 357, 428, 577
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 5 cut(s) 125, 314, 357, 428, 577
TspDTI ATGAA 2 cut(s) 207, 953
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 5 cut(s) 130, 277, 316, 439, 673
VneI GTGCAC 1 cut(s) 268
XapI RAATTY 1 cut(s) 658
XceI RCATGY 2 cut(s) 322, 768
XspI CTAG 2 cut(s) 135, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.