Rorug06G0217400

Protein FANTASTIC FOUR 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013161
Physical Location & Seq
Forward (+)
34733729 .. 34738031
4303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0217400.1

Sequence Viewer

Length: 1044 bp
ATGAGCAATAATCCATATGGGTCTGGCAATCCCAAGTCTCCCAAGTCCTTTGTTGCATACCCAAGTGGTGAGTTTGATTTAGAATCTGGAACCATCCGAAGAACCCGAAAACATAGAAAATCAAAACTCCATCCTATCAAAATGATTAGGTCTGTTGGGAACCGCATGAAGTACTACTGCAAGCTGCACCCTCTGTTGGTTTTTATGATCACTTTGTCAGTTGGGGTCACAATTCTTGTACTGTTGCCTGTGTATGAGAACCGTTTTCAAATGAATAACTATCGAAAATTTGTCATGGATTTCGATAGTTATCCTTTACCGAATCTCAAGAATCTTGTCATGGTTGCTGGGCATTCAGTTTATACTAGTAATAGCTGTGGAAAAGTTGATAAGGAGGATTCTTGGTTTTTGGAGTCTTATCAGAAGAATCCCGGGCAAGCTTCTACTTTTGTGGCCCATATACAAGAGGGAATTGAAATTGCGGCCAAAGACAATGCAGCTCTGCTTCTTTTTAGTGGTGGAGAAACTCGGAGAGATGCTGGTCCTCGCAGTGAGGCACAGAGTTATTGGGCAGTTGCTGAATCAAAAAAATGGTTTGGCAAAGAAGATTTGAGACAGAGGGCACTCACAGAAGAGCATGCTAGGGATAGCTTTGAGAATCTTCTCTTTAGTGTTTGCCGATTTCGAGAGCTTACTGGCATGTATCCTCATAATATAACTGTCGTAAGTTATGATTTCAAGGAGGAGAGATTTGCGCATTTACATAGGTCTGCAATTGGCTTTCCAGAGTCAAGGTTCTTCTATGCTGGTACCCCAGCAATTTCTACTGCAAAAGAAGCAGCTCGAAAAGGAGAGGCAATCGTGCGGGCTCAGTTCCAAGAGGATCCATACGGGTGTCAAGGTTCACTTCACCGCAAAAAACTAGGGCGTGATCCCTTTCACCGGACTATTCCTTATCCTAATGGATGTCCTGAAATTGAAGGTCTATTCAGATATTGTGGGAGTGCTCCTTATCCAGGGTCCCTCCCTTGGTCTCATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

347

Amino Acids

39.49

Weight (kDa)

9.33

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 756
Acc65I GGTACC 1 cut(s) 809
AccB1I GGYRCC 1 cut(s) 809
AciI CCGC 4 cut(s) 163, 482, 865, 913
AclWI GGATC 3 cut(s) 878, 891, 926
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 3 cut(s) 173, 240, 811
AfiI CCNNNNNNNGG 4 cut(s) 196, 942, 1016, 1029
AgsI TTSAA 4 cut(s) 269, 476, 739, 980
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 1 cut(s) 1015
AluBI AGCT 7 cut(s) 184, 375, 440, 500, 651, 691, 842
AluI AGCT 7 cut(s) 184, 375, 440, 500, 651, 691, 842
Alw21I GWGCWC 1 cut(s) 1009
Alw26I GTCTC 3 cut(s) 42, 607, 1038
AlwI GGATC 3 cut(s) 878, 891, 926
AlwNI CAGNNNCTG 1 cut(s) 578
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 2 cut(s) 453, 483
ApeKI GCWGC 3 cut(s) 184, 497, 839
ApoI RAATTY 1 cut(s) 287
Asp718I GGTACC 1 cut(s) 809
AspLEI GCGC 1 cut(s) 757
AspS9I GGNCC 3 cut(s) 454, 542, 1020
AsuC2I CCSGG 2 cut(s) 432, 433
AsuHPI GGTGA 3 cut(s) 80, 902, 932
AvaI CYCGRG 1 cut(s) 431
AvaII GGWCC 2 cut(s) 542, 1020
BaeGI GKGCMC 1 cut(s) 625
BamHI GGATCC 1 cut(s) 883
BanI GGYRCC 1 cut(s) 809
BanII GRGCYC 1 cut(s) 871
Bbv12I GWGCWC 1 cut(s) 1009
BbvI GCAGC 3 cut(s) 171, 509, 851
BccI CCATC 2 cut(s) 101, 138
BciT130I CCWGG 1 cut(s) 1017
BciVI GTATCC 1 cut(s) 714
BclI TGATCA 1 cut(s) 207
BcnI CCSGG 2 cut(s) 432, 433
BcoDI GTCTC 3 cut(s) 42, 607, 1038
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 3 cut(s) 366, 642, 923
BfuI GTATCC 1 cut(s) 714
BisI GCNGC 4 cut(s) 185, 483, 498, 840
BlsI GCNGC 4 cut(s) 186, 484, 499, 841
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 3 cut(s) 432, 433, 1017
Bme18I GGWCC 2 cut(s) 542, 1020
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 3 cut(s) 454, 542, 1020
BmiI GGNNCC 6 cut(s) 91, 161, 811, 885, 1021, 1022
BmrFI CCNGG 3 cut(s) 432, 433, 1017
BmsI GCATC 1 cut(s) 526
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 2 cut(s) 432, 433
BsaBI GATNNNNATC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 1038
BsaJI CCNNGG 3 cut(s) 431, 1016, 1028
BsaWI WCCGGW 1 cut(s) 942
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 942, 1016, 1029
Bse1I ACTGG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 1 cut(s) 1017
BseDI CCNNGG 3 cut(s) 431, 1016, 1028
BseGI GGATG 3 cut(s) 93, 130, 971
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 4 cut(s) 196, 942, 1016, 1029
BseMII CTCAG 1 cut(s) 884
BseNI ACTGG 1 cut(s) 700
BseRI GAGGAG 1 cut(s) 758
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 3 cut(s) 171, 509, 851
BseYI CCCAGC 2 cut(s) 347, 814
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 2 cut(s) 455, 485
BshNI GGYRCC 1 cut(s) 809
BsiHKAI GWGCWC 1 cut(s) 1009
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 2 cut(s) 432, 943
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 4 cut(s) 196, 942, 1016, 1029
BsmAI GTCTC 3 cut(s) 42, 607, 1038
BsmFI GGGAC 1 cut(s) 1006
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 2 cut(s) 455, 485
Bso31I GGTCTC 1 cut(s) 1038
BsoBI CYCGRG 1 cut(s) 431
Bsp1286I GDGCHC 3 cut(s) 625, 871, 1009
Bsp143I GATC 3 cut(s) 207, 883, 931
BspACI CCGC 4 cut(s) 163, 482, 865, 913
BspANI GGCC 2 cut(s) 455, 485
BspCNI CTCAG 1 cut(s) 883
BspLI GGNNCC 6 cut(s) 91, 161, 811, 885, 1021, 1022
BspPI GGATC 3 cut(s) 878, 891, 926
BspQI GCTCTTC 1 cut(s) 627
BspT107I GGYRCC 1 cut(s) 809
BspTNI GGTCTC 1 cut(s) 1038
BsrI ACTGG 1 cut(s) 700
BssECI CCNNGG 3 cut(s) 431, 1016, 1028
BssMI GATC 3 cut(s) 207, 883, 931
BssT1I CCWWGG 1 cut(s) 1028
Bst2UI CCWGG 1 cut(s) 1017
Bst4CI ACNGT 3 cut(s) 243, 263, 721
Bst6I CTCTTC 1 cut(s) 627
BstC8I GCNNGC 4 cut(s) 182, 438, 639, 867
BstDEI CTNAG 1 cut(s) 870
BstENI CCTNNNNNAGG 1 cut(s) 1014
BstF5I GGATG 3 cut(s) 93, 130, 971
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 3 cut(s) 210, 886, 934
BstMAI GTCTC 3 cut(s) 42, 607, 1038
BstMBI GATC 3 cut(s) 207, 883, 931
BstMWI GCNNNNNNNGC 1 cut(s) 836
BstNI CCWGG 1 cut(s) 1017
BstNSI RCATGY 2 cut(s) 641, 703
BstSCI CCNGG 3 cut(s) 430, 431, 1015
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 3 cut(s) 171, 509, 851
BstX2I RGATCY 1 cut(s) 883
BstYI RGATCY 1 cut(s) 883
BsuI GTATCC 1 cut(s) 714
BsuRI GGCC 2 cut(s) 455, 485
BtsCI GGATG 3 cut(s) 93, 130, 971
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 556
Cac8I GCNNGC 4 cut(s) 182, 438, 639, 867
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 1 cut(s) 757
Cfr13I GGNCC 3 cut(s) 454, 542, 1020
Cfr9I CCCGGG 1 cut(s) 431
Csp6I GTAC 3 cut(s) 172, 239, 810
CviAII CATG 5 cut(s) 166, 295, 340, 638, 700
CviQI GTAC 3 cut(s) 172, 239, 810
DdeI CTNAG 1 cut(s) 870
DpnI GATC 3 cut(s) 209, 885, 933
DpnII GATC 3 cut(s) 207, 883, 931
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 1 cut(s) 1028
Eco24I GRGCYC 1 cut(s) 871
Eco31I GGTCTC 1 cut(s) 1038
Eco47I GGWCC 2 cut(s) 542, 1020
Eco88I CYCGRG 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 1014
EcoO109I RGGNCCY 1 cut(s) 1020
EcoRII CCWGG 1 cut(s) 1015
EcoT14I CCWWGG 1 cut(s) 1028
EcoT38I GRGCYC 1 cut(s) 871
ErhI CCWWGG 1 cut(s) 1028
FaeI CATG 5 cut(s) 169, 298, 343, 641, 703
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FaqI GGGAC 1 cut(s) 1006
FatI CATG 5 cut(s) 165, 294, 339, 637, 699
FauI CCCGC 1 cut(s) 858
FauNDI CATATG 1 cut(s) 16
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 4 cut(s) 185, 483, 498, 840
FokI GGATG 3 cut(s) 80, 117, 978
FriOI GRGCYC 1 cut(s) 871
Fsp4HI GCNGC 4 cut(s) 185, 483, 498, 840
FspBI CTAG 3 cut(s) 366, 642, 923
FspI TGCGCA 1 cut(s) 756
GlaI GCGC 1 cut(s) 756
GluI GCNGC 4 cut(s) 185, 483, 498, 840
GsaI CCCAGC 2 cut(s) 351, 818
HaeIII GGCC 2 cut(s) 455, 485
HapII CCGG 2 cut(s) 432, 943
HhaI GCGC 1 cut(s) 757
Hin1II CATG 5 cut(s) 169, 298, 343, 641, 703
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 9 cut(s) 83, 322, 331, 398, 413, 427, 581, 658, 788
HpaII CCGG 2 cut(s) 432, 943
HphI GGTGA 3 cut(s) 80, 902, 932
Hpy166II GTNNAC 1 cut(s) 905
Hpy188I TCNGA 4 cut(s) 98, 423, 531, 992
Hpy188III TCNNGA 5 cut(s) 87, 328, 686, 785, 971
Hpy8I GTNNAC 1 cut(s) 905
HpyAV CCTTC 1 cut(s) 974
HpyCH4III ACNGT 3 cut(s) 243, 263, 721
HpyCH4V TGCA 6 cut(s) 56, 180, 187, 497, 773, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 836
HpyF3I CTNAG 1 cut(s) 870
Hsp92II CATG 5 cut(s) 169, 298, 343, 641, 703
HspAI GCGC 1 cut(s) 755
KflI GGGWCCC 1 cut(s) 1020
KpnI GGTACC 1 cut(s) 813
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 3 cut(s) 207, 883, 931
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 1 cut(s) 1012
Lsp1109I GCAGC 3 cut(s) 171, 509, 851
LweI GCATC 1 cut(s) 526
MaeI CTAG 3 cut(s) 366, 642, 923
MaeIII GTNAC 1 cut(s) 226
MalI GATC 3 cut(s) 209, 885, 933
MboI GATC 3 cut(s) 207, 883, 931
MboII GAAGA 6 cut(s) 111, 436, 617, 644, 653, 790
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 1 cut(s) 883
MhlI GDGCHC 3 cut(s) 625, 871, 1009
MluCI AATT 7 cut(s) 231, 287, 471, 477, 774, 819, 975
MlyI GAGTC 2 cut(s) 422, 797
MseI TTAA 1 cut(s) 1042
MslI CAYNNNNRTG 1 cut(s) 892
MspI CCGG 2 cut(s) 432, 943
MspR9I CCNGG 3 cut(s) 432, 433, 1017
MunI CAATTG 1 cut(s) 774
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 1 cut(s) 1017
MwoI GCNNNNNNNGC 1 cut(s) 836
NciI CCSGG 2 cut(s) 432, 433
NdeI CATATG 1 cut(s) 16
NdeII GATC 3 cut(s) 207, 883, 931
NlaIII CATG 5 cut(s) 169, 298, 343, 641, 703
NlaIV GGNNCC 6 cut(s) 91, 161, 811, 885, 1021, 1022
NmuCI GTSAC 1 cut(s) 226
NsbI TGCGCA 1 cut(s) 756
NspI RCATGY 2 cut(s) 641, 703
PaeI GCATGC 1 cut(s) 641
PciSI GCTCTTC 1 cut(s) 627
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 7 cut(s) 83, 322, 331, 398, 427, 581, 658
PkrI GCNGC 4 cut(s) 186, 484, 499, 841
PleI GAGTC 2 cut(s) 421, 796
PpsI GAGTC 2 cut(s) 421, 796
PpuMI RGGWCCY 1 cut(s) 1020
Psp5II RGGWCCY 1 cut(s) 1020
Psp6I CCWGG 1 cut(s) 1015
PspFI CCCAGC 2 cut(s) 347, 814
PspGI CCWGG 1 cut(s) 1015
PspN4I GGNNCC 6 cut(s) 91, 161, 811, 885, 1021, 1022
PspPI GGNCC 3 cut(s) 454, 542, 1020
PspPPI RGGWCCY 1 cut(s) 1020
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 1 cut(s) 883
RsaI GTAC 3 cut(s) 173, 240, 811
RsaNI GTAC 3 cut(s) 172, 239, 810
RseI CAYNNNNRTG 1 cut(s) 892
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 1 cut(s) 1042
SatI GCNGC 4 cut(s) 185, 483, 498, 840
Sau3AI GATC 3 cut(s) 207, 883, 931
Sau96I GGNCC 3 cut(s) 454, 542, 1020
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 2 cut(s) 422, 797
ScrFI CCNGG 3 cut(s) 432, 433, 1017
SduI GDGCHC 3 cut(s) 625, 871, 1009
SfaNI GCATC 1 cut(s) 526
SinI GGWCC 2 cut(s) 542, 1020
SmaI CCCGGG 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 892
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SpeI ACTAGT 1 cut(s) 365
SphI GCATGC 1 cut(s) 641
Sse9I AATT 7 cut(s) 231, 287, 471, 477, 774, 819, 975
SsiI CCGC 4 cut(s) 163, 482, 865, 913
SspMI CTAG 3 cut(s) 366, 642, 923
StyD4I CCNGG 3 cut(s) 430, 431, 1015
StyI CCWWGG 1 cut(s) 1028
TaaI ACNGT 3 cut(s) 243, 263, 721
TaqI TCGA 4 cut(s) 283, 303, 685, 844
TasI AATT 7 cut(s) 231, 287, 471, 477, 774, 819, 975
TatI WGTACW 2 cut(s) 171, 238
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 7 cut(s) 83, 322, 331, 398, 427, 581, 658
Tru1I TTAA 1 cut(s) 1042
Tru9I TTAA 1 cut(s) 1042
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 3 cut(s) 184, 497, 839
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 182, 287
TspMI CCCGGG 1 cut(s) 431
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 2 cut(s) 542, 1020
XagI CCTNNNNNAGG 1 cut(s) 1014
XapI RAATTY 1 cut(s) 287
XceI RCATGY 2 cut(s) 641, 703
XmaI CCCGGG 1 cut(s) 431
XspI CTAG 3 cut(s) 366, 642, 923
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.