Rh6BG335200

Protein FANTASTIC FOUR 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013161
Physical Location & Seq
Forward (+)
56847511 .. 56848862
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG335200.1

Sequence Viewer

Length: 984 bp
ATGACTTCCACTACTGTCTGTCATCAAGAGCTTCAACCCTGTGTTGAGTCTCTTGTTAGGCTCCAATTGGTACCGCCAAGGCCTAAACTCTCCATTTCTGAACCCCAAGAAATTGGAAAATCCAGTGACAAACCTAGCTGGAGCTTCCTCCAGTCTTTCACCACCACAATTCAGACCCCCAAAACAGAGACTGAAACAGAGAAGGTCTATGTCCACCCTCTTGTGAAACGCTCAGCTTCGGTGCTCAGCCCCAAAAGCCTGGCAATGTGCACTGAAAGCTTGGGCAGCGAGACGGGAAGCGATGCGAGCAGTGGTGACATGTCTTTTCTGCTTCAAAAGAACGACATTCCTTTGTTGTCACTTGAAGCTGAGAAAACCCAAACATTCTCTGCTACAAAACAGACTAATGTAGAAACCCGAAAACTGAGTGACAGTGTTCAAGCACCAAAGAGATTGAATCGTAGTTTTAATGGTGGGAATAATTTTCCTCCACCTTTAACTTCTATCGGTGGCTCCAATGGTGTTCAATTTTTGCCTCACCGTGAAGGCGGCAGGCTTGTTCTGAAAGCCGTTCCTGTCACTTCTCCTGCAAACTATTTCAAAGTTGAGCGCGGCGATGGGCGGCTCAGGCTTCAGTTGTTGAGGGATATGACTCTGAATTCTGACACTAATGAGGAGGTTGAAGATGCAGAAGAAGAAGAAGAAGAAGAAGATGAGGTTGTTAGAGAAGAGGAAGTGGTTGAAGAAATAATGGGAGTTGAGACTGAAACATGTCGGGAGGAAGAGGAAGAGGAAATGGAAGTGGAGGAAAAGAGTGGTGGCTATTGGGAAACAGAGGAGGAGGACACGGAAGGAAATAGTGGGAGTGTTGTGGGTGAAACGGGAATGGAGAAGAAGCTTCCTAGCCGTTGCAAGGAAAGCCGGCGTGGTAACAACAAAATGGTTATGAATTGGCCGCCGGAGTCGTTCTGGGTCGCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

327

Amino Acids

36.49

Weight (kDa)

4.63

Isoelectric Point (pI)

66.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 161 - 213 3.9e-19 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccII CGCG 1 cut(s) 612
AciI CCGC 5 cut(s) 74, 549, 612, 622, 956
AcoI YGGCCR 1 cut(s) 953
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 913
AflIII ACRYGT 2 cut(s) 318, 770
AgsI TTSAA 9 cut(s) 35, 335, 365, 440, 457, 527, 601, 683, 743
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 7 cut(s) 31, 138, 144, 236, 279, 368, 898
AluI AGCT 7 cut(s) 31, 138, 144, 236, 279, 368, 898
Alw21I GWGCWC 2 cut(s) 246, 272
Alw26I GTCTC 4 cut(s) 54, 182, 284, 755
Alw44I GTGCAC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 2 cut(s) 80, 953
ApaLI GTGCAC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 658
Asp718I GGTACC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 612
AsuHPI GGTGA 4 cut(s) 151, 326, 530, 887
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 246, 272
BbvI GCAGC 1 cut(s) 297
BccI CCATC 1 cut(s) 611
BceAI ACGGC 2 cut(s) 554, 891
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 4 cut(s) 54, 182, 284, 755
BfaI CTAG 2 cut(s) 135, 903
BisI GCNGC 5 cut(s) 286, 550, 613, 623, 956
BlpI GCTNAGC 2 cut(s) 232, 245
BlsI GCNGC 5 cut(s) 287, 551, 614, 624, 957
Bme1390I CCNGG 1 cut(s) 260
BmiI GGNNCC 3 cut(s) 62, 72, 514
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 292, 676
BpmI CTGGAG 2 cut(s) 134, 160
Bpu10I CCTNAGC 1 cut(s) 626
Bpu1102I GCTNAGC 2 cut(s) 232, 245
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 913
Bse118I RCCGGY 1 cut(s) 921
Bse1I ACTGG 2 cut(s) 123, 151
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 913
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 5 cut(s) 246, 259, 360, 416, 640
BseNI ACTGG 2 cut(s) 123, 151
BseRI GAGGAG 3 cut(s) 689, 851, 854
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 612
BshFI GGCC 2 cut(s) 82, 955
BshNI GGYRCC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 246, 272
BsiSI CCGG 2 cut(s) 922, 959
BslI CCNNNNNNNGG 1 cut(s) 913
BsmAI GTCTC 4 cut(s) 54, 182, 284, 755
BsmBI CGTCTC 1 cut(s) 284
BsnI GGCC 2 cut(s) 82, 955
Bsp1286I GDGCHC 2 cut(s) 246, 272
Bsp1720I GCTNAGC 2 cut(s) 232, 245
BspACI CCGC 5 cut(s) 74, 549, 612, 622, 956
BspANI GGCC 2 cut(s) 82, 955
BspCNI CTCAG 5 cut(s) 245, 258, 361, 417, 639
BspFNI CGCG 1 cut(s) 612
BspLI GGNNCC 3 cut(s) 62, 72, 514
BspT107I GGYRCC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 921
BsrI ACTGG 2 cut(s) 123, 151
BssAI RCCGGY 1 cut(s) 921
BssECI CCNNGG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 16, 434, 542
Bst6I CTCTTC 3 cut(s) 723, 777, 783
BstC8I GCNNGC 3 cut(s) 307, 554, 923
BstDEI CTNAG 5 cut(s) 232, 245, 369, 425, 626
BstFNI CGCG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 612
BstMAI GTCTC 4 cut(s) 54, 182, 284, 755
BstMWI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 918
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 2 cut(s) 322, 774
BstSCI CCNGG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 1 cut(s) 297
BstXI CCANNNNNNTGG 2 cut(s) 113, 259
BsuRI GGCC 2 cut(s) 82, 955
BtgZI GCGATG 2 cut(s) 315, 630
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 4 cut(s) 130, 270, 316, 439
Cac8I GCNNGC 3 cut(s) 307, 554, 923
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 1 cut(s) 612
Cfr10I RCCGGY 1 cut(s) 921
Csp6I GTAC 1 cut(s) 71
CviAII CATG 2 cut(s) 319, 771
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 5 cut(s) 232, 245, 369, 425, 626
EaeI YGGCCR 1 cut(s) 953
Eam1104I CTCTTC 3 cut(s) 723, 777, 783
EarI CTCTTC 3 cut(s) 723, 777, 783
Eco130I CCWWGG 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 2 cut(s) 322, 774
FaiI YATR 5 cut(s) 210, 320, 650, 772, 947
FatI CATG 2 cut(s) 318, 770
Fnu4HI GCNGC 5 cut(s) 286, 550, 613, 623, 956
Fsp4HI GCNGC 5 cut(s) 286, 550, 613, 623, 956
FspBI CTAG 2 cut(s) 135, 903
GlaI GCGC 1 cut(s) 611
GluI GCNGC 5 cut(s) 286, 550, 613, 623, 956
GsuI CTGGAG 2 cut(s) 134, 160
HaeIII GGCC 2 cut(s) 82, 955
HapII CCGG 2 cut(s) 922, 959
HhaI GCGC 1 cut(s) 612
Hin1II CATG 2 cut(s) 322, 774
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HindIII AAGCTT 2 cut(s) 277, 896
HinfI GANTC 4 cut(s) 47, 457, 652, 962
HpaII CCGG 2 cut(s) 922, 959
HphI GGTGA 4 cut(s) 151, 326, 530, 887
Hpy166II GTNNAC 2 cut(s) 214, 270
Hpy188I TCNGA 5 cut(s) 100, 174, 564, 657, 664
Hpy188III TCNNGA 2 cut(s) 26, 776
Hpy8I GTNNAC 2 cut(s) 214, 270
HpyAV CCTTC 3 cut(s) 196, 539, 845
HpyCH4III ACNGT 3 cut(s) 16, 434, 542
HpyCH4V TGCA 4 cut(s) 270, 590, 689, 912
HpyF10VI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 918
HpyF3I CTNAG 5 cut(s) 232, 245, 369, 425, 626
Hsp92II CATG 2 cut(s) 322, 774
HspAI GCGC 1 cut(s) 610
KpnI GGTACC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 921
KroNI GCCGGC 1 cut(s) 923
LmnI GCTCC 3 cut(s) 66, 141, 518
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 292, 676
MaeI CTAG 2 cut(s) 135, 903
MaeIII GTNAC 6 cut(s) 125, 314, 357, 428, 577, 929
MfeI CAATTG 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 246, 272
MluCI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 949
MlyI GAGTC 3 cut(s) 56, 646, 971
MroNI GCCGGC 1 cut(s) 921
MseI TTAA 2 cut(s) 468, 497
MspI CCGG 2 cut(s) 922, 959
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 918
NaeI GCCGGC 1 cut(s) 923
NgoMIV GCCGGC 1 cut(s) 921
NlaIII CATG 2 cut(s) 322, 774
NlaIV GGNNCC 3 cut(s) 62, 72, 514
NmuCI GTSAC 5 cut(s) 125, 314, 357, 428, 577
NspI RCATGY 2 cut(s) 322, 774
PceI AGGCCT 1 cut(s) 82
PciI ACATGT 2 cut(s) 318, 770
PdiI GCCGGC 1 cut(s) 923
PfeI GAWTC 1 cut(s) 457
PkrI GCNGC 5 cut(s) 287, 551, 614, 624, 957
PleI GAGTC 3 cut(s) 55, 646, 970
PpsI GAGTC 3 cut(s) 55, 646, 970
PscI ACATGT 2 cut(s) 318, 770
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 62, 72, 514
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 468, 497
SatI GCNGC 5 cut(s) 286, 550, 613, 623, 956
SchI GAGTC 3 cut(s) 56, 646, 971
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 246, 272
SfaNI GCATC 2 cut(s) 292, 676
Sse9I AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 949
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 5 cut(s) 74, 549, 612, 622, 956
SspMI CTAG 2 cut(s) 135, 903
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 3 cut(s) 16, 434, 542
TasI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 949
TauI GCSGC 4 cut(s) 552, 615, 625, 958
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 2 cut(s) 468, 497
Tru9I TTAA 2 cut(s) 468, 497
TscAI CASTG 4 cut(s) 130, 277, 316, 439
TseFI GTSAC 5 cut(s) 125, 314, 357, 428, 577
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 5 cut(s) 125, 314, 357, 428, 577
TspDTI ATGAA 1 cut(s) 962
TspGWI ACGGA 1 cut(s) 863
TspRI CASTG 4 cut(s) 130, 277, 316, 439
VneI GTGCAC 1 cut(s) 268
XapI RAATTY 1 cut(s) 658
XceI RCATGY 2 cut(s) 322, 774
XspI CTAG 2 cut(s) 135, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.