Rmu_co8364113.1_g000001

Protein FANTASTIC FOUR 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8364113.1
OG0013161
Physical Location & Seq
Reverse (-)
58 .. 1032
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8364113.1_g000001.1.cds

Sequence Viewer

Length: 975 bp
atgtcttccactactgtctgtcatcaagagcttcaaccctgtgttgagtctcttgttaggctccaattggtaccgccaaggcctaaactctccatttctgaaccccaagaaattggaaaatccagtgacaaacctagctggagcttcctccagtctttaaccaccacaattcagacccccaaaacagagactgaaacagagaaggtctatgtccaccctcttgtgaaacgctcagcttcggtgctcagccccaaaagcctggcaatgtgcactgaaagcttgggcagcgagacgggaagcgatgcgagcagtggtgacatgtcttttctgcttcaaaagaacgacattcctttgttgtcacttgaagctgagaaaacccaaacattctctgctacaaaacagagtaatgtagaaacccgaaaactgagtgacagtgttcaagcaccaaagagattgaatcgtagttttaatggtgggaataattttcctcctcctttaacttctatcggtggctccaatggtgttcaatttttgcctcaccgtgaaagcggcaggcttgttcttaaagccgttcctgtcacttctcctgcaaactatttcaaagtggagcgcggcgatgggcggctcaggcttcagttgttgaggaatatgactctgaattctgacactaatgaggaggttgaagatgcagaagaagaagaagatgaggttgttagagaagaggaagtggttgaagaaataatgggagctgagactgaaacatgtcgggaggaagaggaagaggaaatggaagtggaggaaaagagtggtcgctattgggaaacagaggaggaggacacggaaggaaatagtgggagtgttgtgggagaaacgggaatggagaagaagcttcctagccgttgcaaggaaagccggcgtggtaacaacaaaatggtcatgaattggcagccggagtcgttctgggtcgctacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

324

Amino Acids

36.17

Weight (kDa)

4.76

Isoelectric Point (pI)

67.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccII CGCG 1 cut(s) 612
AciI CCGC 4 cut(s) 74, 549, 612, 622
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 904
AflIII ACRYGT 2 cut(s) 318, 761
AgsI TTSAA 9 cut(s) 35, 335, 365, 440, 457, 527, 601, 683, 734
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 8 cut(s) 31, 138, 144, 236, 279, 368, 749, 889
AluI AGCT 8 cut(s) 31, 138, 144, 236, 279, 368, 749, 889
Alw21I GWGCWC 2 cut(s) 246, 272
Alw26I GTCTC 4 cut(s) 54, 182, 284, 746
Alw44I GTGCAC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 1 cut(s) 80
ApaLI GTGCAC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 285, 946
ApoI RAATTY 1 cut(s) 658
Asp718I GGTACC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 612
AsuHPI GGTGA 2 cut(s) 326, 530
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 246, 272
BbvI GCAGC 2 cut(s) 297, 958
BccI CCATC 1 cut(s) 611
BceAI ACGGC 2 cut(s) 554, 882
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 4 cut(s) 54, 182, 284, 746
BfaI CTAG 2 cut(s) 135, 894
BisI GCNGC 5 cut(s) 286, 550, 613, 623, 947
BlpI GCTNAGC 2 cut(s) 232, 245
BlsI GCNGC 5 cut(s) 287, 551, 614, 624, 948
Bme1390I CCNGG 1 cut(s) 260
BmiI GGNNCC 3 cut(s) 62, 72, 514
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 292, 676
BpmI CTGGAG 2 cut(s) 134, 160
Bpu10I CCTNAGC 1 cut(s) 626
Bpu1102I GCTNAGC 2 cut(s) 232, 245
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 904
Bse118I RCCGGY 1 cut(s) 912
Bse1I ACTGG 2 cut(s) 123, 151
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 904
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 6 cut(s) 246, 259, 360, 416, 640, 741
BseNI ACTGG 2 cut(s) 123, 151
BseRI GAGGAG 4 cut(s) 480, 689, 842, 845
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 2 cut(s) 297, 958
Bsh1236I CGCG 1 cut(s) 612
BshFI GGCC 1 cut(s) 82
BshNI GGYRCC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 246, 272
BsiSI CCGG 2 cut(s) 913, 950
BslI CCNNNNNNNGG 1 cut(s) 904
BsmAI GTCTC 4 cut(s) 54, 182, 284, 746
BsmBI CGTCTC 1 cut(s) 284
BsnI GGCC 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 246, 272
Bsp1720I GCTNAGC 2 cut(s) 232, 245
BspACI CCGC 4 cut(s) 74, 549, 612, 622
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 6 cut(s) 245, 258, 361, 417, 639, 742
BspFNI CGCG 1 cut(s) 612
BspHI TCATGA 1 cut(s) 936
BspLI GGNNCC 3 cut(s) 62, 72, 514
BspT107I GGYRCC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 912
BsrI ACTGG 2 cut(s) 123, 151
BssAI RCCGGY 1 cut(s) 912
BssECI CCNNGG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 16, 434, 542
Bst6I CTCTTC 3 cut(s) 714, 768, 774
BstC8I GCNNGC 3 cut(s) 307, 554, 914
BstDEI CTNAG 6 cut(s) 232, 245, 369, 425, 626, 750
BstFNI CGCG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 612
BstMAI GTCTC 4 cut(s) 54, 182, 284, 746
BstMWI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 909
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 2 cut(s) 322, 765
BstSCI CCNGG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 2 cut(s) 297, 958
BstXI CCANNNNNNTGG 2 cut(s) 113, 259
BsuRI GGCC 1 cut(s) 82
BtgZI GCGATG 2 cut(s) 315, 630
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 4 cut(s) 130, 270, 316, 439
Cac8I GCNNGC 3 cut(s) 307, 554, 914
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 936
CfoI GCGC 1 cut(s) 612
Cfr10I RCCGGY 1 cut(s) 912
Csp6I GTAC 1 cut(s) 71
CviAII CATG 3 cut(s) 319, 762, 937
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 6 cut(s) 232, 245, 369, 425, 626, 750
Eam1104I CTCTTC 3 cut(s) 714, 768, 774
EarI CTCTTC 3 cut(s) 714, 768, 774
Eco130I CCWWGG 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 3 cut(s) 322, 765, 940
FaiI YATR 5 cut(s) 210, 320, 650, 763, 938
FatI CATG 3 cut(s) 318, 761, 936
Fnu4HI GCNGC 5 cut(s) 286, 550, 613, 623, 947
Fsp4HI GCNGC 5 cut(s) 286, 550, 613, 623, 947
FspBI CTAG 2 cut(s) 135, 894
GlaI GCGC 1 cut(s) 611
GluI GCNGC 5 cut(s) 286, 550, 613, 623, 947
GsuI CTGGAG 2 cut(s) 134, 160
HaeIII GGCC 1 cut(s) 82
HapII CCGG 2 cut(s) 913, 950
HhaI GCGC 1 cut(s) 612
Hin1II CATG 3 cut(s) 322, 765, 940
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HindIII AAGCTT 2 cut(s) 277, 887
HinfI GANTC 4 cut(s) 47, 457, 652, 953
HpaII CCGG 2 cut(s) 913, 950
HphI GGTGA 2 cut(s) 326, 530
Hpy166II GTNNAC 2 cut(s) 214, 270
Hpy188I TCNGA 4 cut(s) 100, 174, 657, 664
Hpy188III TCNNGA 3 cut(s) 26, 767, 937
Hpy8I GTNNAC 2 cut(s) 214, 270
HpyAV CCTTC 2 cut(s) 196, 836
HpyCH4III ACNGT 3 cut(s) 16, 434, 542
HpyCH4V TGCA 4 cut(s) 270, 590, 689, 903
HpyF10VI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 909
HpyF3I CTNAG 6 cut(s) 232, 245, 369, 425, 626, 750
Hsp92II CATG 3 cut(s) 322, 765, 940
HspAI GCGC 1 cut(s) 610
KpnI GGTACC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 912
KroNI GCCGGC 1 cut(s) 914
LmnI GCTCC 5 cut(s) 66, 141, 518, 607, 746
Lsp1109I GCAGC 2 cut(s) 297, 958
LweI GCATC 2 cut(s) 292, 676
MaeI CTAG 2 cut(s) 135, 894
MaeIII GTNAC 6 cut(s) 125, 314, 357, 428, 577, 920
MfeI CAATTG 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 246, 272
MluCI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 940
MlyI GAGTC 3 cut(s) 56, 646, 962
MroNI GCCGGC 1 cut(s) 912
MseI TTAA 4 cut(s) 158, 468, 497, 564
MspI CCGG 2 cut(s) 913, 950
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 909
NaeI GCCGGC 1 cut(s) 914
NgoMIV GCCGGC 1 cut(s) 912
NlaIII CATG 3 cut(s) 322, 765, 940
NlaIV GGNNCC 3 cut(s) 62, 72, 514
NmuCI GTSAC 5 cut(s) 125, 314, 357, 428, 577
NspI RCATGY 2 cut(s) 322, 765
PagI TCATGA 1 cut(s) 936
PceI AGGCCT 1 cut(s) 82
PciI ACATGT 2 cut(s) 318, 761
PdiI GCCGGC 1 cut(s) 914
PfeI GAWTC 1 cut(s) 457
PkrI GCNGC 5 cut(s) 287, 551, 614, 624, 948
PleI GAGTC 3 cut(s) 55, 646, 961
PpsI GAGTC 3 cut(s) 55, 646, 961
PscI ACATGT 2 cut(s) 318, 761
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 62, 72, 514
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 4 cut(s) 158, 468, 497, 564
SatI GCNGC 5 cut(s) 286, 550, 613, 623, 947
SchI GAGTC 3 cut(s) 56, 646, 962
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 246, 272
SfaNI GCATC 2 cut(s) 292, 676
Sse9I AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 940
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 4 cut(s) 74, 549, 612, 622
SspMI CTAG 2 cut(s) 135, 894
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 3 cut(s) 16, 434, 542
TasI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 940
TauI GCSGC 3 cut(s) 552, 615, 625
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 4 cut(s) 158, 468, 497, 564
Tru9I TTAA 4 cut(s) 158, 468, 497, 564
TscAI CASTG 4 cut(s) 130, 277, 316, 439
TseFI GTSAC 5 cut(s) 125, 314, 357, 428, 577
TseI GCWGC 2 cut(s) 285, 946
Tsp45I GTSAC 5 cut(s) 125, 314, 357, 428, 577
TspDTI ATGAA 1 cut(s) 953
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 4 cut(s) 130, 277, 316, 439
VneI GTGCAC 1 cut(s) 268
XapI RAATTY 1 cut(s) 658
XceI RCATGY 2 cut(s) 322, 765
XspI CTAG 2 cut(s) 135, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.