RLG00000012146

Protein FANTASTIC FOUR 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013161
Physical Location & Seq
Reverse (-)
15735937 .. 15737805
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012146

Sequence Viewer

Length: 987 bp
ATGTCCTCCACTACTGTCTGTCATCAAGAGCTTCAACCCTGTGTTGAGTCTCTTGTTAGGCTCCAATTGGTACCGCCAAGGCCTAAACTCTCCATATCTGAACCCCAAGAAATTGGAAAATCCAGTGACAAACCTAGCTGGAGCTTCCTCCAGTCTTTCACCACCACAATTCAGACCCCCAAAACAGAGACTGAAACGGAGAAGGTCTATGTCCACCCTCTTGTGAAACGCTCAGCTTCGGTGCTCAGCCCCAAAAGCCTGGCAATGTGCACTGAAAGCTTGGGCAGCGAGACTGGAAGCGATGCGACCGGTGGTGACATGTCGTTTCTGCTTCAAAAGAACGACATTCCTTCTCTGTCACTTGAAGCTGAGAAAACCCAAACGTTCTCTGCTACAAAACAGAGTAATGTAGAAACCCGAAAACTGAGTGACAGTGTTCAAGCACCAAAGAGATTGAATCGTAGTGTTAATGGTGGGAATAATTTTCCTCCACCTTTAACTTCTATCGGTGGCTCCAATGGTGTTCAATTTTTGCCTCACCGTGAAGGCGGCAGGCTTGTTCTGAAAGCCGTTCCTGTCACTTCTCCTGCAAACTATTTCAAAGTGGAGCGCGGCGATGGGCGGCTCAGGCTTCAGTTGTTGAGGGATATGACTCTGAATTCTGACACTAATGAGGAGGTTGAAGATGCAGAAGAAGAAGAAGAAGATGATGAGGCTGTTAGAGAAGAGGAAGTGGTTGAAGAAATAATGGGAGTTGAGACTGAAACATGTCGGGAGGAAGAGGAAGAGGAAGAGGAAATGGAAGTGGAGGAAAAGAGTGGGGGCCATTGGGCAACAGAGGAGGAGGACATGGAAGGAAATAGTGGGAGTGTTGTGGGTGAAACGGGAATGGAGAAGAAGCTTCCTAGCCGTTGCAAGGAAAGCCGGCGCGGTAACAACAAAATGGTCATGAATTGGCCGCCGGAGTCGTTCTGGGTCGCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

329

Amino Acids

36.4

Weight (kDa)

4.66

Isoelectric Point (pI)

70.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 161 - 213 3.9e-19 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccII CGCG 2 cut(s) 612, 930
AciI CCGC 6 cut(s) 74, 549, 612, 622, 930, 959
AclI AACGTT 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 956
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 916
AflIII ACRYGT 2 cut(s) 318, 767
AgeI ACCGGT 1 cut(s) 308
AgsI TTSAA 9 cut(s) 35, 335, 365, 440, 457, 527, 601, 683, 740
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 7 cut(s) 31, 138, 144, 236, 279, 368, 901
AluI AGCT 7 cut(s) 31, 138, 144, 236, 279, 368, 901
Alw21I GWGCWC 2 cut(s) 246, 272
Alw26I GTCTC 4 cut(s) 54, 182, 284, 752
Alw44I GTGCAC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 3 cut(s) 80, 823, 956
ApaLI GTGCAC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 658
AsiGI ACCGGT 1 cut(s) 308
Asp718I GGTACC 1 cut(s) 70
AspLEI GCGC 2 cut(s) 612, 930
AspS9I GGNCC 1 cut(s) 823
AsuHPI GGTGA 4 cut(s) 151, 326, 530, 890
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 246, 272
BbvI GCAGC 1 cut(s) 297
BccI CCATC 1 cut(s) 611
BceAI ACGGC 2 cut(s) 554, 894
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 4 cut(s) 54, 182, 284, 752
BfaI CTAG 2 cut(s) 135, 906
BisI GCNGC 5 cut(s) 286, 550, 613, 623, 959
BlpI GCTNAGC 2 cut(s) 232, 245
BlsI GCNGC 5 cut(s) 287, 551, 614, 624, 960
Bme1390I CCNGG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 823
BmiI GGNNCC 4 cut(s) 62, 72, 514, 824
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 292, 676
BpmI CTGGAG 2 cut(s) 134, 160
Bpu10I CCTNAGC 1 cut(s) 626
Bpu1102I GCTNAGC 2 cut(s) 232, 245
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 916
Bse118I RCCGGY 2 cut(s) 308, 924
Bse1I ACTGG 3 cut(s) 123, 151, 298
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 916
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 5 cut(s) 246, 259, 360, 416, 640
BseNI ACTGG 3 cut(s) 123, 151, 298
BseRI GAGGAG 3 cut(s) 689, 854, 857
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 297
Bsh1236I CGCG 2 cut(s) 612, 930
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 3 cut(s) 82, 825, 958
BshNI GGYRCC 1 cut(s) 70
BshTI ACCGGT 1 cut(s) 308
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 2 cut(s) 246, 272
BsiSI CCGG 3 cut(s) 309, 925, 962
BslI CCNNNNNNNGG 1 cut(s) 916
BsmAI GTCTC 4 cut(s) 54, 182, 284, 752
BsnI GGCC 3 cut(s) 82, 825, 958
Bsp1286I GDGCHC 2 cut(s) 246, 272
Bsp1720I GCTNAGC 2 cut(s) 232, 245
BspACI CCGC 6 cut(s) 74, 549, 612, 622, 930, 959
BspANI GGCC 3 cut(s) 82, 825, 958
BspCNI CTCAG 5 cut(s) 245, 258, 361, 417, 639
BspFNI CGCG 2 cut(s) 612, 930
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 4 cut(s) 62, 72, 514, 824
BspT107I GGYRCC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 2 cut(s) 308, 924
BsrI ACTGG 3 cut(s) 123, 151, 298
BssAI RCCGGY 2 cut(s) 308, 924
BssECI CCNNGG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 16, 434, 542
Bst6I CTCTTC 4 cut(s) 720, 774, 780, 786
BstC8I GCNNGC 2 cut(s) 554, 926
BstDEI CTNAG 5 cut(s) 232, 245, 369, 425, 626
BstFNI CGCG 2 cut(s) 612, 930
BstHHI GCGC 2 cut(s) 612, 930
BstMAI GTCTC 4 cut(s) 54, 182, 284, 752
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 5 cut(s) 255, 276, 285, 628, 921
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 2 cut(s) 322, 771
BstSCI CCNGG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 2 cut(s) 612, 930
BstV1I GCAGC 1 cut(s) 297
BstXI CCANNNNNNTGG 2 cut(s) 113, 259
BsuRI GGCC 3 cut(s) 82, 825, 958
BtgZI GCGATG 2 cut(s) 315, 630
BtsIMutI CAGTG 3 cut(s) 130, 270, 439
Cac8I GCNNGC 2 cut(s) 554, 926
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 948
CfoI GCGC 2 cut(s) 612, 930
Cfr10I RCCGGY 2 cut(s) 308, 924
Cfr13I GGNCC 1 cut(s) 823
Csp6I GTAC 1 cut(s) 71
CspAI ACCGGT 1 cut(s) 308
CviAII CATG 4 cut(s) 319, 768, 850, 949
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 5 cut(s) 232, 245, 369, 425, 626
EaeI YGGCCR 1 cut(s) 956
Eam1104I CTCTTC 4 cut(s) 720, 774, 780, 786
EarI CTCTTC 4 cut(s) 720, 774, 780, 786
Eco130I CCWWGG 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 4 cut(s) 322, 771, 853, 952
FaiI YATR 7 cut(s) 95, 210, 320, 650, 769, 851, 950
FatI CATG 4 cut(s) 318, 767, 849, 948
Fnu4HI GCNGC 5 cut(s) 286, 550, 613, 623, 959
Fsp4HI GCNGC 5 cut(s) 286, 550, 613, 623, 959
FspBI CTAG 2 cut(s) 135, 906
GlaI GCGC 2 cut(s) 611, 929
GluI GCNGC 5 cut(s) 286, 550, 613, 623, 959
GsuI CTGGAG 2 cut(s) 134, 160
HaeIII GGCC 3 cut(s) 82, 825, 958
HapII CCGG 3 cut(s) 309, 925, 962
HhaI GCGC 2 cut(s) 612, 930
Hin1II CATG 4 cut(s) 322, 771, 853, 952
Hin6I GCGC 2 cut(s) 610, 928
HinP1I GCGC 2 cut(s) 610, 928
HindIII AAGCTT 2 cut(s) 277, 899
HinfI GANTC 4 cut(s) 47, 457, 652, 965
HpaII CCGG 3 cut(s) 309, 925, 962
HphI GGTGA 4 cut(s) 151, 326, 530, 890
Hpy166II GTNNAC 2 cut(s) 214, 270
Hpy188I TCNGA 5 cut(s) 100, 174, 564, 657, 664
Hpy188III TCNNGA 3 cut(s) 26, 773, 949
Hpy8I GTNNAC 2 cut(s) 214, 270
HpyAV CCTTC 4 cut(s) 196, 360, 539, 848
HpyCH4III ACNGT 3 cut(s) 16, 434, 542
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 4 cut(s) 270, 590, 689, 915
HpyF10VI GCNNNNNNNGC 5 cut(s) 255, 276, 285, 628, 921
HpyF3I CTNAG 5 cut(s) 232, 245, 369, 425, 626
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 4 cut(s) 322, 771, 853, 952
HspAI GCGC 2 cut(s) 610, 928
KpnI GGTACC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 924
KroNI GCCGGC 1 cut(s) 926
LmnI GCTCC 4 cut(s) 66, 141, 518, 607
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 292, 676
MaeI CTAG 2 cut(s) 135, 906
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 6 cut(s) 125, 314, 357, 428, 577, 932
MfeI CAATTG 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 246, 272
MluCI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 952
MlyI GAGTC 3 cut(s) 56, 646, 974
MroNI GCCGGC 1 cut(s) 924
MseI TTAA 2 cut(s) 468, 497
MspI CCGG 3 cut(s) 309, 925, 962
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 2 cut(s) 612, 930
MwoI GCNNNNNNNGC 5 cut(s) 255, 276, 285, 628, 921
NaeI GCCGGC 1 cut(s) 926
NgoMIV GCCGGC 1 cut(s) 924
NlaIII CATG 4 cut(s) 322, 771, 853, 952
NlaIV GGNNCC 4 cut(s) 62, 72, 514, 824
NmuCI GTSAC 5 cut(s) 125, 314, 357, 428, 577
NspI RCATGY 2 cut(s) 322, 771
PagI TCATGA 1 cut(s) 948
PceI AGGCCT 1 cut(s) 82
PciI ACATGT 2 cut(s) 318, 767
PdiI GCCGGC 1 cut(s) 926
PfeI GAWTC 1 cut(s) 457
PinAI ACCGGT 1 cut(s) 308
PkrI GCNGC 5 cut(s) 287, 551, 614, 624, 960
PleI GAGTC 3 cut(s) 55, 646, 973
PpsI GAGTC 3 cut(s) 55, 646, 973
PscI ACATGT 2 cut(s) 318, 767
Psp1406I AACGTT 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 4 cut(s) 62, 72, 514, 824
PspPI GGNCC 1 cut(s) 823
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 468, 497
SatI GCNGC 5 cut(s) 286, 550, 613, 623, 959
Sau96I GGNCC 1 cut(s) 823
SchI GAGTC 3 cut(s) 56, 646, 974
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 246, 272
SfaNI GCATC 2 cut(s) 292, 676
Sse9I AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 952
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 6 cut(s) 74, 549, 612, 622, 930, 959
SspMI CTAG 2 cut(s) 135, 906
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 3 cut(s) 16, 434, 542
TaiI ACGT 1 cut(s) 386
TasI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 952
TauI GCSGC 4 cut(s) 552, 615, 625, 961
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 2 cut(s) 468, 497
Tru9I TTAA 2 cut(s) 468, 497
TscAI CASTG 3 cut(s) 130, 277, 439
TseFI GTSAC 5 cut(s) 125, 314, 357, 428, 577
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 5 cut(s) 125, 314, 357, 428, 577
TspDTI ATGAA 1 cut(s) 965
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 3 cut(s) 130, 277, 439
VneI GTGCAC 1 cut(s) 268
XapI RAATTY 1 cut(s) 658
XceI RCATGY 2 cut(s) 322, 771
XspI CTAG 2 cut(s) 135, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.