MD03G1265600.v1.1

Protein FANTASTIC FOUR 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0013161
Physical Location & Seq
Forward (+)
35073387 .. 35074448
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1265600.v1.1.491

Sequence Viewer

Length: 1062 bp
ATGTCTTCAACATCAAGCACTGTCTGTCACCCAGGCCTGAAATCATGCCTCGAGCCTCTTGTTCTGCCCAAATTGAATCCACCCGGATTGACTTTCCTCTCCCAATCTCAAGAGAAAGCATCCCAAATCGAGAAAATCGATAACTTGAACTTGAATAACAAGAAGGACAAGAAGGAAGTTGAAGTAGCTGGCTGGAGCTTCCTCCAGTCTCTGGCCAACCCAATTCAACCCACCAAGAGCGAAAGCGAACTGGAGAAAGTCTATGTCCATCCTCTCGCTAAGCGCTCTGCTTCAGCGCTCAGTCCAGGAAGCTTGGAAATGTGCACGGAAAGCTTAGGTAACGAGACGGGTAGCGAAAATGGCGGCGAAAAGCTCTCACTTTTGTTACACAAGATTGAAAGTCCTTTACTCTCACTTGGAAGTAGTGGGGAAGTTACTACTACTATTTCCACAAGTGAGAGCCCAAAAATATTGAGTGACACCAATGTTCAAGCTACACCAAAGAGACTGAAACGTAGTAGCATAACTACTACGAATTTCCCTCCTCCGTTGACATCTATCAGTGGCTCGAATGGTGTTCAAGTGACGCCTCACCGGGAAGGCGGCCGGCTGGTTTTGAAAGCCGTCACAGTTGTCTCCCCTCCCACCGCATATTTCCAAGTGGAGCGCGGTGATGGGAGACTCAGGCTTACATTGTTGAAGGACTTTTCACCCCCTAACTGTGACATTATTGAAGAAGTTGAAGAAGACGACGAGGTTCAAATCGAGGCTAAAAACGAAGAAAATGGTGGTGAAGTTGAAGAAGAGGAACTTGATGGGAAGGTTGAAAATGTTGAAACAGAAGAGATGCAGGGGGATATTGAAAGTGCTGAAACAGAGGAGGTGGAGGGGAAGAATGAACACGTTGTTGAAAACGAGGATATGGAAGGGAGTGATGGAAATGCTGGGGTTGGAAAGGAGAAGGAAAAGAGGCCTCCAAGGCCAAGCAGATGTAAGGAAGGTGGGCGTGGGAACAACAAGATGGTGATGCATTGGCCGGAATCCTTTTGGGTTGCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

354

Amino Acids

38.42

Weight (kDa)

4.81

Isoelectric Point (pI)

61.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 179 - 232 7.6e-18 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03170 AT4G02810
fragaria_vesca FvH4_2g23620
malus_domestica MD03G1265600.v1.1 MD11G1286200.v1.1
prunus_persica Prupe.8G241400_v2.0.a1
pyrus_communis pycom11g25370
rosa_chinensis RchiOBHm_Chr6g0291081
rosa_laevigata RLG00000012146
rosa_multiflora Rmu_co8364113.1_g000001 Rmu_sc0004642.1_g000010
rosa_roxburghii Rroxscaffold_7G00176390
rosa_rugosa Rorug06G0217400
rosa_samantha Rh6AG327700 Rh6BG335200 Rh6CG341400 Rh6DG328600
rosa_wichuraiana Rw6G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AccII CGCG 1 cut(s) 669
AciI CCGC 4 cut(s) 363, 603, 648, 669
AcoI YGGCCR 3 cut(s) 213, 604, 1034
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 587
AfeI AGCGCT 2 cut(s) 284, 297
AfiI CCNNNNNNNGG 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 901
AjnI CCWGG 2 cut(s) 31, 304
AluBI AGCT 6 cut(s) 188, 198, 312, 333, 373, 494
AluI AGCT 6 cut(s) 188, 198, 312, 333, 373, 494
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 5 cut(s) 213, 338, 499, 640, 673
Alw44I GTGCAC 1 cut(s) 322
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 50
Aor51HI AGCGCT 2 cut(s) 284, 297
AoxI GGCC 6 cut(s) 34, 213, 604, 971, 980, 1034
ApaLI GTGCAC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 535
AspLEI GCGC 3 cut(s) 285, 298, 669
AsuC2I CCSGG 2 cut(s) 84, 596
AsuHPI GGTGA 6 cut(s) 20, 584, 683, 702, 803, 1036
AvaI CYCGRG 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 326
BalI TGGCCA 1 cut(s) 215
BanII GRGCYC 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 1 cut(s) 326
BccI CCATC 5 cut(s) 276, 668, 809, 929, 1015
BceAI ACGGC 1 cut(s) 608
BciT130I CCWGG 2 cut(s) 33, 306
BcnI CCSGG 2 cut(s) 84, 596
BcoDI GTCTC 5 cut(s) 213, 338, 499, 640, 673
BfoI RGCGCY 2 cut(s) 286, 299
BglI GCCNNNNNGGC 1 cut(s) 979
BisI GCNGC 2 cut(s) 364, 604
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 2 cut(s) 365, 605
Bme1390I CCNGG 4 cut(s) 33, 84, 306, 596
BmeT110I CYCGRG 1 cut(s) 50
BmrFI CCNGG 4 cut(s) 33, 84, 306, 596
BmsI GCATC 3 cut(s) 128, 837, 1017
BpiI GAAGAC 1 cut(s) 753
BpmI CTGGAG 3 cut(s) 188, 214, 272
Bpu10I CCTNAGC 1 cut(s) 334
Bpu1102I GCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 2 cut(s) 84, 596
Bsa29I ATCGAT 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 587
BsaJI CCNNGG 2 cut(s) 31, 977
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse118I RCCGGY 1 cut(s) 606
Bse1I ACTGG 2 cut(s) 205, 255
BseBI CCWGG 2 cut(s) 33, 306
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 31, 977
BseGI GGATG 2 cut(s) 119, 268
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 313, 697
BseNI ACTGG 2 cut(s) 205, 255
BseRI GAGGAG 2 cut(s) 534, 893
BseSI GKGCMC 1 cut(s) 326
BseX3I CGGCCG 1 cut(s) 604
BseYI CCCAGC 1 cut(s) 944
Bsh1236I CGCG 1 cut(s) 669
Bsh1285I CGRYCG 1 cut(s) 607
BshFI GGCC 6 cut(s) 36, 215, 606, 973, 982, 1036
BshVI ATCGAT 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 4 cut(s) 84, 595, 607, 1037
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 5 cut(s) 213, 338, 499, 640, 673
BsmBI CGTCTC 1 cut(s) 338
BsnI GGCC 6 cut(s) 36, 215, 606, 973, 982, 1036
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 326, 464
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 4 cut(s) 363, 603, 648, 669
BspANI GGCC 6 cut(s) 36, 215, 606, 973, 982, 1036
BspCNI CTCAG 2 cut(s) 312, 696
BspDI ATCGAT 1 cut(s) 138
BspFNI CGCG 1 cut(s) 669
BsrFI RCCGGY 1 cut(s) 606
BsrI ACTGG 2 cut(s) 205, 255
BssAI RCCGGY 1 cut(s) 606
BssECI CCNNGG 2 cut(s) 31, 977
BssNI GRCGYC 1 cut(s) 587
BssT1I CCWWGG 1 cut(s) 977
Bst2UI CCWGG 2 cut(s) 33, 306
Bst4CI ACNGT 3 cut(s) 22, 631, 722
Bst6I CTCTTC 2 cut(s) 798, 837
BstACI GRCGYC 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 190, 608
BstDEI CTNAG 4 cut(s) 279, 299, 334, 683
BstF5I GGATG 2 cut(s) 119, 268
BstFNI CGCG 1 cut(s) 669
BstH2I RGCGCY 2 cut(s) 286, 299
BstHHI GCGC 3 cut(s) 285, 298, 669
BstMAI GTCTC 5 cut(s) 213, 338, 499, 640, 673
BstMCI CGRYCG 1 cut(s) 607
BstMWI GCNNNNNNNGC 3 cut(s) 330, 360, 979
BstNI CCWGG 2 cut(s) 33, 306
BstSCI CCNGG 4 cut(s) 31, 82, 304, 594
BstSLI GKGCMC 1 cut(s) 326
BstUI CGCG 1 cut(s) 669
BstV2I GAAGAC 1 cut(s) 753
BstZI CGGCCG 1 cut(s) 604
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 6 cut(s) 36, 215, 606, 973, 982, 1036
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 2 cut(s) 119, 268
BtsIMutI CAGTG 2 cut(s) 18, 568
Cac8I GCNNGC 2 cut(s) 190, 608
CaiI CAGNNNCTG 1 cut(s) 211
CfoI GCGC 3 cut(s) 285, 298, 669
Cfr10I RCCGGY 1 cut(s) 606
ClaI ATCGAT 1 cut(s) 138
CseI GACGC 1 cut(s) 595
CspCI CAANNNNNGTGG 2 cut(s) 69, 104
CviAII CATG 1 cut(s) 45
DdeI CTNAG 4 cut(s) 279, 299, 334, 683
EaeI YGGCCR 3 cut(s) 213, 604, 1034
EagI CGGCCG 1 cut(s) 604
Eam1104I CTCTTC 2 cut(s) 798, 837
EarI CTCTTC 2 cut(s) 798, 837
EclXI CGGCCG 1 cut(s) 604
Eco130I CCWWGG 1 cut(s) 977
Eco147I AGGCCT 2 cut(s) 36, 973
Eco24I GRGCYC 1 cut(s) 464
Eco47III AGCGCT 2 cut(s) 284, 297
Eco52I CGGCCG 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 50
EcoRII CCWGG 2 cut(s) 31, 304
EcoT14I CCWWGG 1 cut(s) 977
EcoT22I ATGCAT 1 cut(s) 1032
EcoT38I GRGCYC 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 977
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 1 cut(s) 48
FaiI YATR 5 cut(s) 46, 264, 524, 652, 923
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FatI CATG 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 364, 604
FokI GGATG 2 cut(s) 106, 255
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 2 cut(s) 364, 604
GlaI GCGC 3 cut(s) 284, 297, 668
GluI GCNGC 2 cut(s) 364, 604
GsaI CCCAGC 1 cut(s) 948
GsuI CTGGAG 3 cut(s) 188, 214, 272
HaeII RGCGCY 2 cut(s) 286, 299
HaeIII GGCC 6 cut(s) 36, 215, 606, 973, 982, 1036
HapII CCGG 4 cut(s) 84, 595, 607, 1037
HgaI GACGC 1 cut(s) 595
HhaI GCGC 3 cut(s) 285, 298, 669
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 1 cut(s) 48
Hin6I GCGC 3 cut(s) 283, 296, 667
HinP1I GCGC 3 cut(s) 283, 296, 667
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HindIII AAGCTT 2 cut(s) 310, 331
HinfI GANTC 3 cut(s) 76, 681, 1040
HpaII CCGG 4 cut(s) 84, 595, 607, 1037
HphI GGTGA 6 cut(s) 20, 584, 683, 702, 803, 1036
Hpy166II GTNNAC 2 cut(s) 324, 552
Hpy188III TCNNGA 2 cut(s) 110, 130
Hpy8I GTNNAC 2 cut(s) 324, 552
Hpy99I CGWCG 1 cut(s) 755
HpyAV CCTTC 8 cut(s) 157, 166, 593, 694, 814, 920, 955, 992
HpyCH4III ACNGT 3 cut(s) 22, 631, 722
HpyCH4IV ACGT 2 cut(s) 514, 903
HpyCH4V TGCA 3 cut(s) 324, 850, 1030
HpyF10VI GCNNNNNNNGC 3 cut(s) 330, 360, 979
HpyF3I CTNAG 4 cut(s) 279, 299, 334, 683
HpySE526I ACGT 2 cut(s) 514, 903
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 1 cut(s) 48
HspAI GCGC 3 cut(s) 283, 296, 667
KroI GCCGGC 1 cut(s) 606
KroNI GCCGGC 1 cut(s) 608
LmnI GCTCC 2 cut(s) 195, 664
LweI GCATC 3 cut(s) 128, 837, 1017
MaeII ACGT 2 cut(s) 514, 903
MaeIII GTNAC 8 cut(s) 26, 338, 384, 433, 476, 583, 625, 722
MboII GAAGA 8 cut(s) 746, 755, 758, 791, 812, 815, 854, 904
MhlI GDGCHC 2 cut(s) 326, 464
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 3 cut(s) 71, 222, 535
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 1 cut(s) 675
MmeI TCCRAC 1 cut(s) 931
Mox20I TGGCCA 1 cut(s) 215
Mph1103I ATGCAT 1 cut(s) 1032
MroNI GCCGGC 1 cut(s) 606
MscI TGGCCA 1 cut(s) 215
MseI TTAA 1 cut(s) 1060
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 4 cut(s) 84, 595, 607, 1037
MspR9I CCNGG 4 cut(s) 33, 84, 306, 596
MvaI CCWGG 2 cut(s) 33, 306
MvnI CGCG 1 cut(s) 669
MwoI GCNNNNNNNGC 3 cut(s) 330, 360, 979
NaeI GCCGGC 1 cut(s) 608
NciI CCSGG 2 cut(s) 84, 596
NgoMIV GCCGGC 1 cut(s) 606
NlaIII CATG 1 cut(s) 48
NmuCI GTSAC 5 cut(s) 26, 476, 583, 625, 722
NsiI ATGCAT 1 cut(s) 1032
PaeR7I CTCGAG 1 cut(s) 50
PceI AGGCCT 2 cut(s) 36, 973
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 608
PfeI GAWTC 2 cut(s) 76, 1040
PflMI CCANNNNNTGG 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 304
PkrI GCNGC 2 cut(s) 365, 605
PleI GAGTC 1 cut(s) 675
PpsI GAGTC 1 cut(s) 675
Psp6I CCWGG 2 cut(s) 31, 304
PspFI CCCAGC 1 cut(s) 944
PspGI CCWGG 2 cut(s) 31, 304
PspXI VCTCGAGB 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 211
SaqAI TTAA 1 cut(s) 1060
SatI GCNGC 2 cut(s) 364, 604
SchI GAGTC 1 cut(s) 675
ScrFI CCNGG 4 cut(s) 33, 84, 306, 596
SduI GDGCHC 2 cut(s) 326, 464
SfaNI GCATC 3 cut(s) 128, 837, 1017
SfiI GGCCNNNNNGGCC 1 cut(s) 979
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 50, 108
SmoI CTYRAG 2 cut(s) 50, 108
Sse9I AATT 3 cut(s) 71, 222, 535
SseBI AGGCCT 2 cut(s) 36, 973
SsiI CCGC 4 cut(s) 363, 603, 648, 669
SspI AATATT 1 cut(s) 471
StuI AGGCCT 2 cut(s) 36, 973
StyD4I CCNGG 4 cut(s) 31, 82, 304, 594
StyI CCWWGG 1 cut(s) 977
TaaI ACNGT 3 cut(s) 22, 631, 722
TaiI ACGT 2 cut(s) 517, 906
TaqI TCGA 5 cut(s) 51, 129, 138, 569, 765
TasI AATT 3 cut(s) 71, 222, 535
TauI GCSGC 2 cut(s) 366, 606
TfiI GAWTC 2 cut(s) 76, 1040
Tru1I TTAA 1 cut(s) 1060
Tru9I TTAA 1 cut(s) 1060
TscAI CASTG 2 cut(s) 25, 568
TseFI GTSAC 5 cut(s) 26, 476, 583, 625, 722
Tsp45I GTSAC 5 cut(s) 26, 476, 583, 625, 722
TspDTI ATGAA 1 cut(s) 912
TspGWI ACGGA 2 cut(s) 341, 537
TspRI CASTG 2 cut(s) 25, 568
Van91I CCANNNNNTGG 1 cut(s) 211
VneI GTGCAC 1 cut(s) 322
XapI RAATTY 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.