AT1G03687

DTW

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007999
Physical Location & Seq
Forward (+)
918285 .. 920592
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03687.1

Sequence Viewer

Length: 1146 bp
ATGCGTTGTATCGCTGGAGCATCCGTAGCCGATTTCTCTCCGTCGCTACTGTTTCACCGCCGTAATCTCGTAGCTGTTGGCCAGAGATTGCTTATGACTTCCTCGATTTTGCGTTCTCATACGAGGGAATTCGACGTTTGCGATGAAGGAATCATCTCGGTAGAGGAGTGGCGGAAATGGGGTCCGGTGTCTCCATTTCCATCCGCGGTCAAACAGATTGTGGATGATTTGAAAGTTCTGGAGTGCAAATTGGATTCTCCGATAGATTTTGGTGGTAATGGTGGCAAGTTACAGGGACCGTTTGGTGCATACGAAGATAAGAAGCATAGGGCTACATATGAAGCATTAGATGACCCGGAGAAAAAGTTTCGTTTTTTTTCTGCTCGACAGGTTGCTTGTCGGCTGCTTGGGAGCAGGGGTTATTTATGCCAGAAGTGTTGGCTTGCTATGGAGGATTGCATGTGTTCATATGTTAAGCCATGTGGTTTATGGAAACGGATACGTTTTTGGCTGTATATGCATCCTAGGGATTTTCTACGCCAGAACAACACAGGGAAGCTGTTGTGGCAGATATTTGGCGTCCAATCAGCTACACTCTGCGTCTTTGGAATAGCTGAAGACGAAGAGATCATGTGGAATGAATTCAAGCGTGCAGGAAAAAGCCAAGTCCGTTGCCTCTATCCCAACCACAACTCGGAAGTAACTTTCTCGGTTAAAGACGCTTTTGGTAGTTCGGCTTCAGAGAATCATGTATCATCCACGACAGATGAGGATAAAACTCTGCATTTCATTTTGCTTGATGGCACGTGGAACAATTCTGCTGCAATGCTCAAGCGTTTAAAGGATCATGCAAAGTCAGTATGGGGAGACGAAGATCTTCCTTGTATATCTCTTGCAACCGGTGCATCCGCAATGCACAAACTCCGGCCACAACCATCATGGGACCGGACCTGCACGGCTGCAGCAGCAATTGGACTCCTATCTGAGCTTAGCCTTCTCCCACAGTTAAGCAGCTACGAGTTAGACAAACAAGCTGATGCAGTCGAGGAAGCTTTGGTCATACTACTGGACTCACTAACAGGTCGCCGCTTAAGAATGGGCAGGTCAATAACTCGTAAAGGCAGAAACACCATCAGCATGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DTW

Protein Analysis

381

Amino Acids

42.92

Weight (kDa)

8.47

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DTW PF03942 141 - 357 2.9e-39 DTW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 959, 1092
AccII CGCG 1 cut(s) 206
AciI CCGC 6 cut(s) 58, 172, 204, 206, 909, 1087
AclWI GGATC 1 cut(s) 852
AcoI YGGCCR 2 cut(s) 79, 926
AcsI RAATTY 2 cut(s) 128, 641
AcuI CTGAAG 2 cut(s) 636, 723
AcvI CACGTG 1 cut(s) 807
AcyI GRCGYC 1 cut(s) 579
AfiI CCNNNNNNNGG 1 cut(s) 694
AflII CTTAAG 1 cut(s) 1090
AgeI ACCGGT 1 cut(s) 899
AgsI TTSAA 2 cut(s) 232, 646
AluBI AGCT 8 cut(s) 74, 559, 590, 614, 988, 1014, 1034, 1052
AluI AGCT 8 cut(s) 74, 559, 590, 614, 988, 1014, 1034, 1052
Alw26I GTCTC 2 cut(s) 195, 861
AlwI GGATC 1 cut(s) 852
AoxI GGCC 2 cut(s) 79, 926
ApeKI GCWGC 6 cut(s) 403, 821, 959, 962, 965, 1011
ApoI RAATTY 2 cut(s) 128, 641
AsiGI ACCGGT 1 cut(s) 899
Asp700I GAANNNNTTC 2 cut(s) 641, 876
AspA2I CCTAGG 1 cut(s) 524
AspS9I GGNCC 4 cut(s) 182, 296, 943, 948
AsuC2I CCSGG 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 47
AvaII GGWCC 4 cut(s) 182, 296, 943, 948
AvrII CCTAGG 1 cut(s) 524
BalI TGGCCA 1 cut(s) 81
BarI GAAGNNNNNNTAC 2 cut(s) 721, 753
BbrPI CACGTG 1 cut(s) 807
BbsI GAAGAC 1 cut(s) 624
BbvI GCAGC 6 cut(s) 390, 808, 946, 974, 977, 1023
BccI CCATC 4 cut(s) 208, 794, 943, 1139
BceAI ACGGC 2 cut(s) 45, 972
BciVI GTATCC 1 cut(s) 492
BcnI CCSGG 1 cut(s) 356
BcoDI GTCTC 2 cut(s) 195, 861
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 960
BfrI CTTAAG 1 cut(s) 1090
BfuAI ACCTGC 2 cut(s) 959, 1092
BfuI GTATCC 1 cut(s) 492
BglII AGATCT 1 cut(s) 874
BisI GCNGC 7 cut(s) 404, 822, 960, 963, 966, 1012, 1087
BlnI CCTAGG 1 cut(s) 524
BlpI GCTNAGC 1 cut(s) 989
BlsI GCNGC 7 cut(s) 405, 823, 961, 964, 967, 1013, 1088
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 4 cut(s) 182, 296, 943, 948
BmgT120I GGNCC 4 cut(s) 182, 296, 943, 948
BmiI GGNNCC 3 cut(s) 183, 297, 944
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 4 cut(s) 29, 529, 914, 1027
BpiI GAAGAC 1 cut(s) 624
BpmI CTGGAG 2 cut(s) 36, 260
Bpu1102I GCTNAGC 1 cut(s) 989
BpuEI CTTGAG 1 cut(s) 815
BpuMI CCSGG 1 cut(s) 356
BsaAI YACGTR 1 cut(s) 807
BsaHI GRCGYC 1 cut(s) 579
BsaJI CCNNGG 2 cut(s) 204, 524
BsaWI WCCGGW 3 cut(s) 184, 899, 945
BsaXI ACNNNNNCTCC 6 cut(s) 9, 39, 350, 380, 403, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 694
Bse118I RCCGGY 1 cut(s) 899
Bse1I ACTGG 1 cut(s) 1071
Bse3DI GCAATG 2 cut(s) 831, 918
BseDI CCNNGG 2 cut(s) 204, 524
BseGI GGATG 6 cut(s) 20, 200, 229, 520, 755, 905
BseLI CCNNNNNNNGG 1 cut(s) 694
BseMI GCAATG 2 cut(s) 831, 918
BseMII CTCAG 1 cut(s) 975
BseNI ACTGG 1 cut(s) 1071
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 6 cut(s) 390, 808, 946, 974, 977, 1023
BsgI GTGCAG 2 cut(s) 672, 937
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 81, 928
BshTI ACCGGT 1 cut(s) 899
BsiSI CCGG 5 cut(s) 185, 356, 900, 925, 946
BslFI GGGAC 2 cut(s) 309, 956
BslI CCNNNNNNNGG 1 cut(s) 694
BsmAI GTCTC 2 cut(s) 195, 861
BsmBI CGTCTC 1 cut(s) 861
BsmFI GGGAC 2 cut(s) 309, 956
BsnI GGCC 2 cut(s) 81, 928
Bsp143I GATC 3 cut(s) 627, 844, 874
Bsp1720I GCTNAGC 1 cut(s) 989
BspACI CCGC 6 cut(s) 58, 172, 204, 206, 909, 1087
BspANI GGCC 2 cut(s) 81, 928
BspCNI CTCAG 1 cut(s) 976
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 3 cut(s) 183, 297, 944
BspMAI CTGCAG 1 cut(s) 964
BspMI ACCTGC 2 cut(s) 959, 1092
BspPI GGATC 1 cut(s) 852
BspTI CTTAAG 1 cut(s) 1090
BsrDI GCAATG 2 cut(s) 831, 918
BsrFI RCCGGY 1 cut(s) 899
BsrI ACTGG 1 cut(s) 1071
BssAI RCCGGY 1 cut(s) 899
BssECI CCNNGG 2 cut(s) 204, 524
BssMI GATC 3 cut(s) 627, 844, 874
BssNI GRCGYC 1 cut(s) 579
BssT1I CCWWGG 1 cut(s) 524
Bst4CI ACNGT 3 cut(s) 51, 300, 1005
Bst6I CTCTTC 1 cut(s) 618
BstACI GRCGYC 1 cut(s) 579
BstAFI CTTAAG 1 cut(s) 1090
BstAPI GCANNNNNTGC 1 cut(s) 902
BstBAI YACGTR 1 cut(s) 807
BstC8I GCNNGC 2 cut(s) 444, 651
BstDEI CTNAG 2 cut(s) 984, 989
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 6 cut(s) 20, 200, 229, 520, 755, 905
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 3 cut(s) 630, 847, 877
BstMAI GTCTC 2 cut(s) 195, 861
BstMBI GATC 3 cut(s) 627, 844, 874
BstMWI GCNNNNNNNGC 5 cut(s) 26, 517, 565, 902, 965
BstNSI RCATGY 2 cut(s) 463, 1141
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 960
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 6 cut(s) 390, 808, 946, 974, 977, 1023
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 874
BstYI RGATCY 1 cut(s) 874
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 2 cut(s) 81, 928
BtgI CCRYGG 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 6 cut(s) 20, 200, 229, 520, 755, 905
BveI ACCTGC 2 cut(s) 959, 1092
Cac8I GCNNGC 2 cut(s) 444, 651
Cfr10I RCCGGY 1 cut(s) 899
Cfr13I GGNCC 4 cut(s) 182, 296, 943, 948
Cfr42I CCGCGG 1 cut(s) 207
CseI GACGC 3 cut(s) 568, 589, 728
CspAI ACCGGT 1 cut(s) 899
CviAII CATG 7 cut(s) 460, 480, 631, 749, 848, 939, 1138
DdeI CTNAG 2 cut(s) 984, 989
DpnI GATC 3 cut(s) 629, 846, 876
DpnII GATC 3 cut(s) 627, 844, 874
DraI TTTAAA 1 cut(s) 840
EaeI YGGCCR 2 cut(s) 79, 926
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
EciI GGCGGA 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 524
Eco47I GGWCC 4 cut(s) 182, 296, 943, 948
Eco57I CTGAAG 2 cut(s) 636, 723
Eco72I CACGTG 1 cut(s) 807
EcoRI GAATTC 2 cut(s) 128, 641
EcoT14I CCWWGG 1 cut(s) 524
EcoT22I ATGCAT 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 524
Esp3I CGTCTC 1 cut(s) 861
FaeI CATG 7 cut(s) 463, 483, 634, 752, 851, 942, 1141
FaqI GGGAC 2 cut(s) 309, 956
FatI CATG 7 cut(s) 459, 479, 630, 748, 847, 938, 1137
FauNDI CATATG 2 cut(s) 337, 469
Fnu4HI GCNGC 7 cut(s) 404, 822, 960, 963, 966, 1012, 1087
FokI GGATG 6 cut(s) 7, 187, 236, 507, 742, 892
Fsp4HI GCNGC 7 cut(s) 404, 822, 960, 963, 966, 1012, 1087
FspBI CTAG 1 cut(s) 525
GluI GCNGC 7 cut(s) 404, 822, 960, 963, 966, 1012, 1087
GsuI CTGGAG 2 cut(s) 36, 260
HaeIII GGCC 2 cut(s) 81, 928
HapII CCGG 5 cut(s) 185, 356, 900, 925, 946
HgaI GACGC 3 cut(s) 568, 589, 728
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 7 cut(s) 463, 483, 634, 752, 851, 942, 1141
HindIII AAGCTT 1 cut(s) 1050
HinfI GANTC 5 cut(s) 150, 254, 745, 975, 1070
HpaII CCGG 5 cut(s) 185, 356, 900, 925, 946
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 4 cut(s) 261, 697, 742, 985
Hpy188III TCNNGA 1 cut(s) 239
Hpy99I CGWCG 2 cut(s) 46, 137
HpyAV CCTTC 2 cut(s) 140, 1004
HpyCH4III ACNGT 3 cut(s) 51, 300, 1005
HpyCH4IV ACGT 3 cut(s) 135, 502, 806
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 517, 565, 902, 965
HpyF3I CTNAG 2 cut(s) 984, 989
HpySE526I ACGT 3 cut(s) 135, 502, 806
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 7 cut(s) 463, 483, 634, 752, 851, 942, 1141
KspI CCGCGG 1 cut(s) 207
Kzo9I GATC 3 cut(s) 627, 844, 874
LmnI GCTCC 2 cut(s) 17, 411
Lsp1109I GCAGC 6 cut(s) 390, 808, 946, 974, 977, 1023
LweI GCATC 4 cut(s) 29, 529, 914, 1027
MaeI CTAG 1 cut(s) 525
MaeII ACGT 3 cut(s) 135, 502, 806
MaeIII GTNAC 2 cut(s) 288, 700
MalI GATC 3 cut(s) 629, 846, 876
MboI GATC 3 cut(s) 627, 844, 874
MboII GAAGA 5 cut(s) 326, 629, 635, 869, 884
MfeI CAATTG 1 cut(s) 969
MflI RGATCY 1 cut(s) 874
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 5 cut(s) 128, 248, 641, 814, 969
MluNI TGGCCA 1 cut(s) 81
MlyI GAGTC 2 cut(s) 969, 1064
MnlI CCTC 7 cut(s) 112, 117, 157, 445, 686, 763, 1039
Mox20I TGGCCA 1 cut(s) 81
Mph1103I ATGCAT 1 cut(s) 522
MroXI GAANNNNTTC 2 cut(s) 641, 876
MscI TGGCCA 1 cut(s) 81
MseI TTAA 5 cut(s) 474, 714, 839, 1007, 1091
MslI CAYNNNNRTG 1 cut(s) 1136
Msp20I TGGCCA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 206
MspCI CTTAAG 1 cut(s) 1090
MspI CCGG 5 cut(s) 185, 356, 900, 925, 946
MspR9I CCNGG 1 cut(s) 356
MunI CAATTG 1 cut(s) 969
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 5 cut(s) 26, 517, 565, 902, 965
NciI CCSGG 1 cut(s) 356
NdeI CATATG 2 cut(s) 337, 469
NdeII GATC 3 cut(s) 627, 844, 874
NlaIII CATG 7 cut(s) 463, 483, 634, 752, 851, 942, 1141
NlaIV GGNNCC 3 cut(s) 183, 297, 944
NsiI ATGCAT 1 cut(s) 522
NspI RCATGY 2 cut(s) 463, 1141
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PdmI GAANNNNTTC 2 cut(s) 641, 876
PfeI GAWTC 3 cut(s) 150, 254, 745
PinAI ACCGGT 1 cut(s) 899
PkrI GCNGC 7 cut(s) 405, 823, 961, 964, 967, 1013, 1088
PleI GAGTC 2 cut(s) 969, 1064
PmaCI CACGTG 1 cut(s) 807
PmlI CACGTG 1 cut(s) 807
PpsI GAGTC 2 cut(s) 969, 1064
Ppu21I YACGTR 1 cut(s) 807
PspCI CACGTG 1 cut(s) 807
PspN4I GGNNCC 3 cut(s) 183, 297, 944
PspPI GGNCC 4 cut(s) 182, 296, 943, 948
PstI CTGCAG 1 cut(s) 964
PsuI RGATCY 1 cut(s) 874
RseI CAYNNNNRTG 1 cut(s) 1136
SacII CCGCGG 1 cut(s) 207
SaqAI TTAA 5 cut(s) 474, 714, 839, 1007, 1091
SatI GCNGC 7 cut(s) 404, 822, 960, 963, 966, 1012, 1087
Sau3AI GATC 3 cut(s) 627, 844, 874
Sau96I GGNCC 4 cut(s) 182, 296, 943, 948
SchI GAGTC 2 cut(s) 969, 1064
ScrFI CCNGG 1 cut(s) 356
SfaNI GCATC 4 cut(s) 29, 529, 914, 1027
SfcI CTRYAG 1 cut(s) 960
Sfr303I CCGCGG 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 207
SinI GGWCC 4 cut(s) 182, 296, 943, 948
SmiMI CAYNNNNRTG 1 cut(s) 1136
SmlI CTYRAG 2 cut(s) 830, 1090
SmoI CTYRAG 2 cut(s) 830, 1090
Sse9I AATT 5 cut(s) 128, 248, 641, 814, 969
SsiI CCGC 6 cut(s) 58, 172, 204, 206, 909, 1087
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 3 cut(s) 51, 300, 1005
TaiI ACGT 3 cut(s) 138, 505, 809
TaqI TCGA 4 cut(s) 104, 132, 385, 1044
TasI AATT 5 cut(s) 128, 248, 641, 814, 969
TauI GCSGC 1 cut(s) 1089
TfiI GAWTC 3 cut(s) 150, 254, 745
Tru1I TTAA 5 cut(s) 474, 714, 839, 1007, 1091
Tru9I TTAA 5 cut(s) 474, 714, 839, 1007, 1091
TseI GCWGC 6 cut(s) 403, 821, 959, 962, 965, 1011
TspDTI ATGAA 5 cut(s) 159, 354, 456, 654, 778
TspGWI ACGGA 4 cut(s) 13, 30, 511, 659
Vha464I CTTAAG 1 cut(s) 1090
VpaK11BI GGWCC 4 cut(s) 182, 296, 943, 948
XapI RAATTY 2 cut(s) 128, 641
XceI RCATGY 2 cut(s) 463, 1141
XcmI CCANNNNNNNNNTGG 2 cut(s) 486, 936
XmaJI CCTAGG 1 cut(s) 524
XmnI GAANNNNTTC 2 cut(s) 641, 876
XspI CTAG 1 cut(s) 525
Zsp2I ATGCAT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.