Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007999

Physical Location & Seq

Genomic Coordinates Forward (+)

27719566 .. 27720324

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0263100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGAAACAAACGCAGTGAGGATGTTGCTAGTTCCATCACTGAAGATCTCCACCTAGAAATCTTAGTAAGGCTCCCAGTAAAATCTCTCATTCGGTTTCAATGTGTATGCAAGCGGTGGACGGGTTTGATTCGCAGCTCAAGTTTTGTTACAACACATATCAGACAACATTCCCATACCAATCTAATTACGGATGACCGCTCAAGGTTTGACCAAGTTGAGCTTTGCTACTCTCTTTTTCCTTTTGAAAGATTTGAGCAGTCCCTGGAGTTAAAACTTCCCTTTCATCCCCAACTAGACTACTTCAAGATATATGGTTCAACGAATGGTTTATTGTGTCTTGCTGGGAATGTAATGGATTCAAATAGCCCTATATACATATGGAACCCCTCTGTTAGGAAATTCAGGACTCTTCCACAACCAACATTCGAACATTATTGTGTGGACTATTTTCCCAAGCATGTTGATATCCCTCTCTTATTTGGATTCCACCCAGATCTAAATGACTATAAGGTAATTTGGATGCTGCCTGGTTCCATCAAAATGGAGGTTTATACTCTTAGCACAAATTCTTGGACGATTATTCAAGTCATGCCACCTTGGCTCAATACTATGAAGTTTTCTACTCAATCTGAATTTTGGAATGGAAGGGAATATTGGCTTGCTACGCGAGATTTAATGGTTAGGGTTGTGTTGTGTGATACTAACAATAAAGAATTTGATCGAAGAAGTGGCGGTCCCAATTACTATTTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DTW

Protein Analysis

252

Amino Acids

29.86

Weight (kDa)

8.18

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	13 - 49	4.2e-07	F-box domain
FBA_1	PF07734	86 - 223	1.5e-10	F-box associated beta propeller domain
FBA_3	PF08268	90 - 233	1.6e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03687 AT1G03687
fragaria_vesca	FvH4_6g26190 FvH4_6g26190 FvH4_6g26190
malus_domestica	MD17G1241000.v1.1
prunus_persica	Prupe.3G137200_v2.0.a1 Prupe.3G137200_v2.0.a1 Prupe.3G137200_v2.0.a1 Prupe.3G137200_v2.0.a1
pyrus_communis	pycom17g24410
rosa_chinensis	RchiOBHm_Chr2g0126401
rosa_laevigata	RLG00000018904
rosa_multiflora	Rmu_co8240339.1_g000001 Rmu_ssc0000476.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117170
rosa_rugosa	Rorug02G0263100 Rorug02G0263200
rosa_samantha	Rh2AG319900 Rh2BG328500 Rh2CG308000 Rh2DG347800 Rh7CG318700
rosa_wichuraiana	Rw2G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	201
AccII	CGCG	1 cut(s)	670
AciI	CCGC	3 cut(s)	115, 199, 735
AcsI	RAATTY	4 cut(s)	401, 568, 635, 716
AcuI	CTGAAG	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	6 cut(s)	101, 248, 307, 321, 363, 587
AjnI	CCWGG	2 cut(s)	264, 529
AjuI	GAANNNNNNNTTGG	2 cut(s)	640, 672
AluBI	AGCT	2 cut(s)	138, 223
AluI	AGCT	2 cut(s)	138, 223
AlwNI	CAGNNNCTG	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	135, 526
ApoI	RAATTY	4 cut(s)	401, 568, 635, 716
AspS9I	GGNCC	1 cut(s)	737
AsuII	TTCGAA	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	737
BbvI	GCAGC	2 cut(s)	147, 513
BccI	CCATC	2 cut(s)	44, 545
BciT130I	CCWGG	2 cut(s)	266, 531
BfaI	CTAG	3 cut(s)	30, 56, 296
BglI	GCCNNNNNGGC	1 cut(s)	601
BglII	AGATCT	2 cut(s)	46, 496
BisI	GCNGC	2 cut(s)	136, 527
BlsI	GCNGC	2 cut(s)	137, 528
Bme1390I	CCNGG	2 cut(s)	266, 531
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	4 cut(s)	74, 386, 535, 739
BmrFI	CCNGG	2 cut(s)	266, 531
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	513
BmuI	ACTGGG	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	287
Bpu14I	TTCGAA	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	124, 187
BsaJI	CCNNGG	2 cut(s)	264, 599
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	266, 531
BseDI	CCNNGG	2 cut(s)	264, 599
BseGI	GGATG	4 cut(s)	28, 199, 286, 528
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	147, 513
BseYI	CCCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	670
BslFI	GGGAC	2 cut(s)	247, 723
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmFI	GGGAC	2 cut(s)	247, 723
Bsp119I	TTCGAA	1 cut(s)	429
Bsp143I	GATC	3 cut(s)	46, 496, 721
BspACI	CCGC	3 cut(s)	115, 199, 735
BspFNI	CGCG	1 cut(s)	670
BspLI	GGNNCC	4 cut(s)	74, 386, 535, 739
BspT104I	TTCGAA	1 cut(s)	429
BsrBI	CCGCTC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	264, 599
BssMI	GATC	3 cut(s)	46, 496, 721
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	2 cut(s)	266, 531
Bst6I	CTCTTC	1 cut(s)	417
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	113, 663
BstDEI	CTNAG	2 cut(s)	64, 560
BstENI	CCTNNNNNAGG	1 cut(s)	394
BstF5I	GGATG	4 cut(s)	28, 199, 286, 528
BstFNI	CGCG	1 cut(s)	670
BstKTI	GATC	3 cut(s)	49, 499, 724
BstMBI	GATC	3 cut(s)	46, 496, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	601, 667
BstNI	CCWGG	2 cut(s)	266, 531
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	264, 529
BstUI	CGCG	1 cut(s)	670
BstV1I	GCAGC	2 cut(s)	147, 513
BstX2I	RGATCY	2 cut(s)	46, 496
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	2 cut(s)	46, 496
BtsCI	GGATG	4 cut(s)	28, 199, 286, 528
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	22, 39
Cac8I	GCNNGC	2 cut(s)	113, 663
CaiI	CAGNNNCTG	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	737
CviAII	CATG	2 cut(s)	461, 592
CviJI	RGCY	6 cut(s)	73, 138, 223, 369, 604, 661
CviKI_1	RGCY	6 cut(s)	73, 138, 223, 369, 604, 661
DdeI	CTNAG	2 cut(s)	64, 560
DpnI	GATC	3 cut(s)	48, 498, 723
DpnII	GATC	3 cut(s)	46, 496, 721
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	599
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	63
EcoNI	CCTNNNNNAGG	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	264, 529
EcoRV	GATATC	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	2 cut(s)	464, 595
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	2 cut(s)	247, 723
FatI	CATG	2 cut(s)	460, 591
FauNDI	CATATG	1 cut(s)	380
Fnu4HI	GCNGC	2 cut(s)	136, 527
FokI	GGATG	4 cut(s)	35, 206, 273, 535
Fsp4HI	GCNGC	2 cut(s)	136, 527
FspBI	CTAG	3 cut(s)	30, 56, 296
GluI	GCNGC	2 cut(s)	136, 527
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	287
Hin1II	CATG	2 cut(s)	464, 595
HinfI	GANTC	4 cut(s)	130, 359, 409, 486
Hpy166II	GTNNAC	2 cut(s)	120, 445
Hpy188I	TCNGA	2 cut(s)	164, 634
Hpy188III	TCNNGA	2 cut(s)	307, 406
Hpy8I	GTNNAC	2 cut(s)	120, 445
HpyAV	CCTTC	1 cut(s)	642
HpyCH4V	TGCA	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	2 cut(s)	601, 667
HpyF3I	CTNAG	2 cut(s)	64, 560
Hsp92II	CATG	2 cut(s)	464, 595
Kzo9I	GATC	3 cut(s)	46, 496, 721
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	8 cut(s)	90, 251, 278, 330, 391, 507, 516, 543
Lsp1109I	GCAGC	2 cut(s)	147, 513
LweI	GCATC	1 cut(s)	513
MaeI	CTAG	3 cut(s)	30, 56, 296
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	3 cut(s)	48, 498, 723
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	3 cut(s)	46, 496, 721
MboII	GAAGA	3 cut(s)	56, 404, 738
MflI	RGATCY	2 cut(s)	46, 496
MluCI	AATT	7 cut(s)	186, 401, 516, 568, 635, 716, 742
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	4 cut(s)	13, 400, 483, 541
MseI	TTAA	2 cut(s)	272, 677
MslI	CAYNNNNRTG	2 cut(s)	438, 542
MspR9I	CCNGG	2 cut(s)	266, 531
MvaI	CCWGG	2 cut(s)	266, 531
MvnI	CGCG	1 cut(s)	670
MwoI	GCNNNNNNNGC	2 cut(s)	601, 667
NdeI	CATATG	1 cut(s)	380
NdeII	GATC	3 cut(s)	46, 496, 721
NlaIII	CATG	2 cut(s)	464, 595
NlaIV	GGNNCC	4 cut(s)	74, 386, 535, 739
NspI	RCATGY	1 cut(s)	464
NspV	TTCGAA	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	130, 359, 486
PkrI	GCNGC	2 cut(s)	137, 528
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	264, 529
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	2 cut(s)	264, 529
PspN4I	GGNNCC	4 cut(s)	74, 386, 535, 739
PspPI	GGNCC	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	46, 496
RseI	CAYNNNNRTG	2 cut(s)	438, 542
SaqAI	TTAA	2 cut(s)	272, 677
SatI	GCNGC	2 cut(s)	136, 527
Sau3AI	GATC	3 cut(s)	46, 496, 721
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	2 cut(s)	266, 531
SetI	ASST	7 cut(s)	57, 140, 209, 225, 516, 552, 601
SfaNI	GCATC	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	1 cut(s)	737
SmiMI	CAYNNNNRTG	2 cut(s)	438, 542
SmlI	CTYRAG	2 cut(s)	139, 202
SmoI	CTYRAG	2 cut(s)	139, 202
Sse9I	AATT	7 cut(s)	186, 401, 516, 568, 635, 716, 742
SsiI	CCGC	3 cut(s)	115, 199, 735
SspI	AATATT	1 cut(s)	656
SspMI	CTAG	3 cut(s)	30, 56, 296
StyD4I	CCNGG	2 cut(s)	264, 529
StyI	CCWWGG	1 cut(s)	599
TaqI	TCGA	2 cut(s)	429, 724
TasI	AATT	7 cut(s)	186, 401, 516, 568, 635, 716, 742
TfiI	GAWTC	3 cut(s)	130, 359, 486
Tru1I	TTAA	2 cut(s)	272, 677
Tru9I	TTAA	2 cut(s)	272, 677
TscAI	CASTG	2 cut(s)	22, 46
TseI	GCWGC	2 cut(s)	135, 526
TspDTI	ATGAA	2 cut(s)	275, 629
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	22, 46
VpaK11BI	GGWCC	1 cut(s)	737
XagI	CCTNNNNNAGG	1 cut(s)	394
XapI	RAATTY	4 cut(s)	401, 568, 635, 716
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	3 cut(s)	30, 56, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.