Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8240339.1

Orthogroup ID

OG0007999

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 562

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8240339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

gatcaagcaaagttagtatggggaggagaggactttccttgtatttccctggccactggtgcttctgcgatgcataaacttcggccccaaccatcattggatcgtacctgtacagcagcagcagctgttggcctcctctccgagctgcacgttcttccagagttcaggtcccatggatttgataagcaggctgaagttgtagaggatgctttagttgtactattagaggctctaacaaatagacgacttcggatgggcaggtccatcagtcgtaaagtaagacatacgagcgattttggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DTW

Protein Analysis

100

Amino Acids

10.95

Weight (kDa)

8.06

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03687 AT1G03687
fragaria_vesca	FvH4_6g26190 FvH4_6g26190 FvH4_6g26190
malus_domestica	MD17G1241000.v1.1
prunus_persica	Prupe.3G137200_v2.0.a1 Prupe.3G137200_v2.0.a1 Prupe.3G137200_v2.0.a1 Prupe.3G137200_v2.0.a1
pyrus_communis	pycom17g24410
rosa_chinensis	RchiOBHm_Chr2g0126401
rosa_laevigata	RLG00000018904
rosa_multiflora	Rmu_co8240339.1_g000001 Rmu_ssc0000476.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117170
rosa_rugosa	Rorug02G0263100 Rorug02G0263200
rosa_samantha	Rh2AG319900 Rh2BG328500 Rh2CG308000 Rh2DG347800 Rh7CG318700
rosa_wichuraiana	Rw2G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	249
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	3 cut(s)	106, 112, 219
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	125, 145
AluI	AGCT	2 cut(s)	125, 145
AlwI	GGATC	1 cut(s)	108
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	3 cut(s)	51, 83, 130
ApeKI	GCWGC	4 cut(s)	116, 119, 122, 145
AspS9I	GGNCC	3 cut(s)	84, 168, 261
AvaII	GGWCC	2 cut(s)	168, 261
BalI	TGGCCA	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	128, 131, 132, 134
BccI	CCATC	3 cut(s)	100, 247, 272
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	249
BisI	GCNGC	4 cut(s)	117, 120, 123, 146
BlsI	GCNGC	4 cut(s)	118, 121, 124, 147
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	2 cut(s)	168, 261
BmgT120I	GGNCC	3 cut(s)	84, 168, 261
BmiI	GGNNCC	2 cut(s)	86, 170
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	60, 196
BsaJI	CCNNGG	2 cut(s)	48, 172
Bse1I	ACTGG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	48, 172
BseGI	GGATG	2 cut(s)	211, 258
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	2 cut(s)	39, 125
BseXI	GCAGC	4 cut(s)	128, 131, 132, 134
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	3 cut(s)	53, 85, 132
BslFI	GGGAC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	53, 85, 132
Bsp1407I	TGTACA	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	100
Bsp19I	CCATGG	1 cut(s)	172
BspANI	GGCC	3 cut(s)	53, 85, 132
BspLI	GGNNCC	2 cut(s)	86, 170
BspMI	ACCTGC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	108
BsrGI	TGTACA	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	48, 172
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	211, 258
BstKTI	GATC	2 cut(s)	4, 103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 122
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	128, 131, 132, 134
BsuRI	GGCC	3 cut(s)	53, 85, 132
BtgI	CCRYGG	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	211, 258
BtsIMutI	CAGTG	1 cut(s)	54
BveI	ACCTGC	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	125
Cfr13I	GGNCC	3 cut(s)	84, 168, 261
Csp6I	GTAC	3 cut(s)	105, 111, 218
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	7 cut(s)	53, 85, 125, 132, 145, 191, 230
CviKI_1	RGCY	7 cut(s)	53, 85, 125, 132, 145, 191, 230
CviQI	GTAC	3 cut(s)	105, 111, 218
DpnI	GATC	2 cut(s)	3, 102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	168, 261
Eco57I	CTGAAG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	176
FaiI	YATR	4 cut(s)	19, 75, 174, 285
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	4 cut(s)	117, 120, 123, 146
FokI	GGATG	2 cut(s)	218, 265
Fsp4HI	GCNGC	4 cut(s)	117, 120, 123, 146
GluI	GCNGC	4 cut(s)	117, 120, 123, 146
HaeIII	GGCC	3 cut(s)	53, 85, 132
Hin1II	CATG	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	142, 252
Hpy188III	TCNNGA	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	73, 148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 122
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	35, 42, 62, 121, 151, 171, 173, 244
Lsp1109I	GCAGC	4 cut(s)	128, 131, 132, 134
LweI	GCATC	2 cut(s)	60, 196
MaeII	ACGT	1 cut(s)	150
MalI	GATC	2 cut(s)	3, 102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	146
MlsI	TGGCCA	1 cut(s)	53
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	6 cut(s)	17, 22, 143, 146, 196, 220
Mox20I	TGGCCA	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	1 cut(s)	301
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	59, 122
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	2 cut(s)	86, 170
NsiI	ATGCAT	1 cut(s)	75
PkrI	GCNGC	4 cut(s)	118, 121, 124, 147
PpuMI	RGGWCCY	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	86, 170
PspPI	GGNCC	3 cut(s)	84, 168, 261
PspPPI	RGGWCCY	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	3 cut(s)	106, 112, 219
RsaNI	GTAC	3 cut(s)	105, 111, 218
SaqAI	TTAA	1 cut(s)	301
SatI	GCNGC	4 cut(s)	117, 120, 123, 146
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	3 cut(s)	84, 168, 261
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	6 cut(s)	110, 127, 147, 153, 170, 263
SfaNI	GCATC	2 cut(s)	60, 196
SinI	GGWCC	2 cut(s)	168, 261
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	172
TaiI	ACGT	1 cut(s)	153
TatI	WGTACW	2 cut(s)	110, 217
Tru1I	TTAA	1 cut(s)	301
Tru9I	TTAA	1 cut(s)	301
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	4 cut(s)	116, 119, 122, 145
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	168, 261
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.